BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02530.1
Length=869
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943474 jgi|Araly1|943474|scaffold_604018.1 1094 0.0
> Ahg943474 jgi|Araly1|943474|scaffold_604018.1
Length=690
Score = 1094 bits (592), Expect = 0.0
Identities = 654/684 (96%), Gaps = 4/684 (1%)
Strand=Plus/Plus
Query 13 AGAGAAGCAGAAATGGCGAAATCACTCCTTTGTTCATCAACCTTAAACCCTTTCTTCTCC 72
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 AGAGAAGCAAAAATGGCGAAATCACTCCTTTGTTCATCAACCTTAAACCCTTTCTTCTCC 70
Query 73 ACCACTCTCTCCTCTTCGAAGAAGAACCAAATTGCATACTCGGGAAACAGCAAGAACCAG 132
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 71 ACCACTCTCTCTTCTTCGAAGAAGAACCAAATTGCATACTCAGGAAACAGCAAGAACCAG 130
Query 133 ACATCGTCGTCTCTGTTATGGAAAAGAAGGGAACTGTCGCTTGGATTTATGAGCAGCTTA 192
| | ||| |||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 131 A-A--ATCGACTCTGTTATGCAACAGAAGGGAACTGTCGCTTGGATTTATGAGCAGCTTA 187
Query 193 GTTGCGATTGGTCTCGTGAGTAATGACAGAAGAAGACACGACGCGAATGCAGCGATTCTT 252
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 188 GTTGCGATTAGTCTCGTGAGTAATGACAGAAGAAGACACGACGCGAATGCTGCGATTCTT 247
Query 253 GAAGCTGATGACGATGAAGAGCTTCTCGAGAAAGTGAAGCAAGATCGGAAAAAGAGGATT 312
|||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 248 GAAGCTGACGACGATGAAGAGCTTCTGGAGAAAGTGAAGCAAGATCGGAAGAAGAGGATC 307
Query 313 GAGAGACAAGCTGTTCTTAATTCTGCTGTCAAGGAAAAGGGGTATTTGCAGGATCTTGTT 372
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 308 GAGAGACAAGCTGTTCTTAATTCTGCTGTAAAGGAAAAGGGGTATTTGCAGGATCTTGTT 367
Query 373 TACAAGTTGAGCAAGGTAGGACAAGCCATTGAGAACAATGATCTACCAGCTGCAGGTTTG 432
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TATAAGTTAAGCAAAGTAGGACAAGCCATTGAGAACAATGATCTACCAGCTGCAGGTTTG 427
Query 433 GTTTTGGGGAAAGGCATTGATACCGAATGGGTCAAAACCGTTAATCTGGCTTTCACAAAG 492
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 428 GTTTTGGGGAAAGGCATTGATACCGAATGGGTCAAAACCGTTAATTTGGCTTTCACAAAG 487
Query 493 TTGAGTACAAGCCCAGAAGAGAATACAGAGGTGGAAGCATTCAATTCATCATTGGCTTCT 552
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 488 TTGAGTACAAGCCCAGAAGAGAATACAGAAGTGGAAGCATTTAATTCATCATTAGCTTCT 547
Query 553 CTTATCACATCAGTGAACAAGAACGATATAGAGTCATCGAAGCTCGCTTTCGTTTCATCA 612
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 548 CTTATTACATCAGTGAACAAGAACGATATAGAGTCATCGAAGCTCGCTTTCGTGTCATCG 607
Query 613 GCTGGTGCATTTGAGAAATGGACTACTTTGACAGGTCTTTTGGAACAGCTTAAGGGACTG 672
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 608 GCTGGTGCATTTGAGAAATGGACGACTTTGACAGGTCTTTTGGAACAACTTAAGGGACTG 667
Query 673 TGATAGGCTGGCTACAAATTCTTT 696
|||||||||| |||||||||||||
Sbjct 668 TGATAGGCTG-CTACAAATTCTTT 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32175741948
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5