BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02740.1
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490282 jgi|Araly1|490282|fgenesh2_kg.6__3416__AT4G02740.1 2194 0.0
Ahg943444 jgi|Araly1|943444|scaffold_603988.1 388 5e-107
Ahg352549 jgi|Araly1|352549|fgenesh1_pg.C_scaffold_6003142 315 9e-85
Ahg887750 jgi|Araly1|887750|Al_scaffold_1084_1 141 2e-32
> Ahg490282 jgi|Araly1|490282|fgenesh2_kg.6__3416__AT4G02740.1
Length=1582
Score = 2194 bits (1188), Expect = 0.0
Identities = 1462/1590 (92%), Gaps = 36/1590 (2%)
Strand=Plus/Plus
Query 28 ATCCTCCCACCCAAAGCCATAACTCGGTCCGTACTGTTCCAGGCTCGAATCATAGCCACA 87
|||||||||| ||||||| |||||||||||||||| |||| |||||||| ||||||||||
Sbjct 14 ATCCTCCCACACAAAGCCCTAACTCGGTCCGTACTCTTCCCGGCTCGAACCATAGCCACA 73
Query 88 CCGATTTGATTATCTCATCGTTCCTTTCGTTTCCAGATTCCTCTCCGATCTCCATTAGCA 147
|||||||||||||||||||| || |||||||| ||||||| ||| ||||||||||||||
Sbjct 74 CCGATTTGATTATCTCATCGCTCATTTCGTTTTCAGATTCTTCTACGATCTCCATTAGCT 133
Query 148 ATTCCTTCGATCGAGTCCTTGATAGAGCTCTCGCCTCCGCTTCCGCTGATGAATCCGTTC 207
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 GTTCCTTCGATCGAGTCCTTGATAGAGCTCTCGCCTCCGCTTCCGCTGATGAATCCGTTC 193
Query 208 AGGATCGTCTCGTCGATCGTACTCTCGAACTCGCGTCGCTTCTTCTCGATTCCACTAGGC 267
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 194 AGGATCGTCTCGTCGATCGTACTCTCGAACTCGCATCGCTTCTTCTCGATTCCACGAAAC 253
Query 268 GTTGCTTCCGTAAGCGAGCTTCTGTTCACAATTCCAATTCCTGGTCCCTCCCTCCAGAAC 327
| |||||||| || ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 254 GATGCTTCCGGAAACGAGCTTCTGTTCACAATTCCAATTCCTGGTTCCTTCCTCCAGAAC 313
Query 328 TTACCATTAAGGTCTTTTCGATGCTTGATACAAAGTCTATGATGCAAGCAGCTGTGTGCT 387
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 314 TTACCATTAAGGTATTTTCGATGCTTGATACAAAGTCTCTGATGCAAGCAGCTGTGTGCT 373
Query 388 GCACCATGTTCAATAAATGTGCAATGGACCGTTTATGTTACTCCCACATCGACCTGACAA 447
||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 374 GCACCATGTTCAACAAATGTGCTATGGACCGTTTATGTTACTCCCACATCGACTTGACAA 433
Query 448 CGTCTGCTAGATATGCTGATAAAGGAGTTGTGTCTACTATGATCAATCGGGCTGGTAAAG 507
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 434 CCTCTGCTAGATATGCTGATAAAGGAGTTGTGTCTACTATGATCAATCGGGCTGGAAAAG 493
Query 508 AACTCAGATCCCTGAAACTTGGTCGTGTTGTTCGTACAGCTGGATCTGATTCTGCTGCAC 567
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 494 AACTCAGATCCCTCAAACTTGGTCGTGTTGTTCGTACAGCTGGATCTGATTCTACTGCAC 553
Query 568 CTTTGCTTAGCGGATCTTGTCTTTCCCCACTAGCATATAATCATGGTTTTCTTGGGAGTC 627
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 554 CTTTGCTTAGCGGATCTTGTCTTTCCCCACTAGCATATAATCATGGCTTTCTTGGGAGTC 613
Query 628 GCTTGAGAAGCCTACGGCTTTACAATCTCAGACCTATAAAATACAGGTCCTTATGCGATG 687
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 614 GCTTGAGAAGCCTGCGGCTTTACAATCTCAGACCTATGAAATACAGGTCCTTATGCGATG 673
Query 688 CGTTGTCAGTTTGTCCAAATATCACTGATCTGAGGATTGTGGGATTGTATAACTTAACCG 747
||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| |
Sbjct 674 CGTTGTCAGTTTGTCCAAATATCACTGATTTGAGGATTGTTGGATTGTATAACCTAACTG 733
Query 748 AGGAGCTATTTAATTCATTGACaaaaaaaTGCCGCTTAATAGAGCACCTGTTCTTAGAGA 807
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 734 AGGAGCTATTTAATTCATTGACAAAAAAATGCCGCTTAATAGAGAACCTGTTCTTAGAGA 793
Query 808 CCTACGGTTATCCACGTACGTTAGAGAGTAAAGCAGGATCATCCTTAGTAGAGTTTGTGA 867
||||||||||||||||||||||||||| |||| |||||||||| ||||| ||||||||||
Sbjct 794 CCTACGGTTATCCACGTACGTTAGAGACTAAAACAGGATCATCATTAGTGGAGTTTGTGA 853
Query 868 CCAATTGCCCCAACTTAACGTCCCTGACGCTCATACGTTTTGGACTAACCGATGACTGGG 927
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 854 CCAATTGCCCCAACTTAACGTCCCTAACGCTCATACGCTTTGGACTAACCGATGACTGGG 913
Query 928 CCCGAAATCTTGCTGAGAGTTGTCGTAAACTGAAGTACCTGAATTTGTCCCGATCACCTA 987
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 914 CCCGAAATCTTGCTGAGAGTTGTCGTAAAGTGAAGTACCTGAATTTGTCCAGATCACCTA 973
Query 988 CAATCAAGGGTCGTTTTTTGAGGGAGTTGGGACTTAGCTGCAAAGAAAATCTACTCAAGA 1047
|||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||||
Sbjct 974 CAATCAAGGGTCGTTTTTTGAGGGAGGTGGGACCTAGCTGCAGAGAAAGTCTACTCAAGA 1033
Query 1048 CTCTAATATTGCGCAGCTGCCCAAAACTACAGGAGAAAGAAGTATTGGAATTCTGTAACT 1107
|||||||| |||||| |||||| |||||||||||||||||| | ||||||||||||||||
Sbjct 1034 CTCTAATAATGCGCAACTGCCCTAAACTACAGGAGAAAGAAATGTTGGAATTCTGTAACT 1093
Query 1108 CACTACTCACAGGGAACTTCAAATCCATTCGGCAAATTGATGTTTCAAGTAACAGTGGAT 1167
||||||||||||||| ||||||||||||| |||| |||||||||||||||||| | || |
Sbjct 1094 CACTACTCACAGGGAGCTTCAAATCCATTAGGCACATTGATGTTTCAAGTAACCGCGGCT 1153
Query 1168 TAGCTTCTTCAGACAGGGGCAAGAGATGTAACAAACCAAACTTTCCTCTGGAGAGGCTGA 1227
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 TAGCATCTTCAGACAGGGGCAAGAGATGTAACAAACCAAACTTTCCTCTGGAGAGGCTGA 1213
Query 1228 AAGAAGAAAGATCAGATGTCACATTTGTGGCGGA-TTT--TCCATCAACAAGTTCAGGAA 1284
|||||||||||||||||||||||||||||||||| ||| ||||| | ||||| | ||
Sbjct 1214 AAGAAGAAAGATCAGATGTCACATTTGTGGCGGACTTTCCTCCATTGCCTAGTTCCGAAA 1273
Query 1285 AGCGTTATGGTGTGTGCGATGAAGAAGAGCTGAGGCTGATAGAGATGATGGAAGCTGAGG 1344
||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1274 AGCCTTATGGTGTCTGCGATGAAGAAGAGTTGAGGCTGATAGAGATGATGGAAGCTGAGG 1333
Query 1345 ACGATGAAGTGGACGAAGAAGATGACTCGGATGACGACA-CTGACGATGTATCGGATGAA 1403
|||||||||||||||| ||||||||||||||||| || | | ||||||| |||||||||
Sbjct 1334 ACGATGAAGTGGACGACGAAGATGACTCGGATGAGGA-ATCGGACGATGCATCGGATGAG 1392
Query 1404 GATGAGTCAGAAAATGATGATGACATGGGAATGGGATTTGATGTCGATTATTTGTTGTGA 1463
|||||||||||| |||| | |||||||| | || |||||||||||||||| |||
Sbjct 1393 GATGAGTCAGAAGATGA-G--GACATGGGC-T----TTA-ATGTCGATTATTTGTTATGA 1443
Query 1464 TTAGTGTTTGGTAATC-GTTAGTATTTC-TTATTGAACTAGTCTAGTCCAAAGGGAAGTT 1521
|||||||| ||||||| |||||| || | ||||||||||| | | ||| | ||||||
Sbjct 1444 TTAGTGTT-GGTAATCCGTTAGTGTT-CGTTATTGAACTA-T-T---CCAC-GAGAAGTT 1495
Query 1522 CTTTGTTTCTTTC-CTT------CTTATTG--GGAAATACAAACATACCATATCATTAAA 1572
||| |||||||| ||| ||| ||| || | ||||||||| | || ||||||
Sbjct 1496 CTTCGTTTCTTTTGCTTAAGATTCTTCTTGTTGGCA---CAAACATACGAAATTATTAAA 1552
Query 1573 CGAATTTGAAAAATGTGACGTTGTGGTTTT 1602
|||||| |||||| ||||||||||||||||
Sbjct 1553 CGAATTAGAAAAAAGTGACGTTGTGGTTTT 1582
> Ahg943444 jgi|Araly1|943444|scaffold_603988.1
Length=574
Score = 388 bits (210), Expect = 5e-107
Identities = 294/332 (89%), Gaps = 16/332 (5%)
Strand=Plus/Plus
Query 1157 TAACAGTGGATTAGCTTCTTCAGACAGGGGCAAGAGATGTAACAAACCAAACTTTCCTCT 1216
|||| | || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 TAACCGCGGCTTAGCATCTTCAGACAGGGGCAAGAGATGTAACAAACCAAACTTTCCTCT 313
Query 1217 GGAGAGGCTGAAAGAAGAAAGATCAGATGTCACATTTGTGGCGGA-TTT--TCCATCAAC 1273
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
Sbjct 314 GGAGAGGCTGAAAGAAGAAAGATCAGATGTCACATTTGTGGCGGACTTTCCTCCATTGCC 373
Query 1274 AAGTTCAGGAAAGCGTTATGGTGTGTGCGATGAAGAAGAGCTGAGGCTGATAGAGATGAT 1333
||||| | ||||| ||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 374 TAGTTCCGAAAAGCCTTATGGTGTCTGCGATGAAGAAGAGTTGAGGCTGATAGAGATGAT 433
Query 1334 GGAAGCTGAGGACGATGAAGTGGACGAAGAAGATGACTCGGATGACGACA-CTGACGATG 1392
||||||||||||||||||||||||||| ||||||||||||||||| || | | |||||||
Sbjct 434 GGAAGCTGAGGACGATGAAGTGGACGACGAAGATGACTCGGATGAGGA-ATCGGACGATG 492
Query 1393 TATCGGATGAAGATGAGTCAGAAAATGATGATGACATGGGAATGGGATTTGATGTCGATT 1452
||||||||| |||||||||||| |||| | |||||||| | || |||||||||
Sbjct 493 CATCGGATGAGGATGAGTCAGAAGATGA-G--GACATGGGC-T----TTA-ATGTCGATT 543
Query 1453 ATTTGTTGTGATTAGTGTTTGGTAATC-GTTA 1483
||||||| ||||||||||| ||||||| ||||
Sbjct 544 ATTTGTTATGATTAGTGTT-GGTAATCCGTTA 574
> Ahg352549 jgi|Araly1|352549|fgenesh1_pg.C_scaffold_6003142
Length=1359
Score = 315 bits (170), Expect = 9e-85
Identities = 437/561 (78%), Gaps = 38/561 (7%)
Strand=Plus/Plus
Query 187 CTT-CCGCTGATGAATCCGTTCAGGATCGTCTCGTCGATCGTACTCTCGAACTCGCGTCG 245
||| ||| |||||||| | |||||||||| || | |||||||||||| ||||||| |||
Sbjct 227 CTTCCCG-TGATGAATTTGATCAGGATCGTTTCCTAGATCGTACTCTCCAACTCGCATCG 285
Query 246 CTTCTTCT-CGATTCCACTAGGCGTTGCTTCCGTAAGCGAGCTTCTGTTCACAATTCC-A 303
|||||| | | | ||||| | |||||| | | || || || | | || ||||||
Sbjct 286 CTTCTT-TACAAGTCCACCAAACGTTGCATAAGGAAACGTGCCACCCTCCAAAATTCCTC 344
Query 304 ATTCCTGGTCCCTC-CCT-CCAGAACTTACCATTAAGGTCTTTTCGATGCTTGATACAAA 361
| |||||| |||| ||| || ||||| |||| |||||||||||| ||||||||||| ||
Sbjct 345 A-TCCTGG--CCTCTCCTCCCTGAACTAACCACTAAGGTCTTTTCAATGCTTGATACGAA 401
Query 362 GTCTATGATGCAAGCAGCTGTGTGCTGCACCATGTTCAATAAATGTGCAATGGACCGTTT 421
|||| | |||||||| ||| || ||||| |||||||| || ||||| ||||| ||| |
Sbjct 402 GTCTCTCATGCAAGCTTCTGCATGTTGCACGATGTTCAACAAGTGTGCCATGGATCGTGT 461
Query 422 ATGTTACTCCCACATCGACCTGACAACGTCTGCTAGATA-T-GCTGATAAAGGAGTTGTG 479
|||||||||||||||||||||||||||| |||| || | | | |||||| |||||||||
Sbjct 462 ATGTTACTCCCACATCGACCTGACAACGGCTGCC-GA-AGTTGTTGATAATGGAGTTGTG 519
Query 480 T-C-TACTATGATCAATCGGGCTGGTAAAGAACTCAGATCCCTGAAACTTGGT-CGTGTT 536
| | || |||||| |||||||||| ||||||||||||||||| ||||||||| | | ||
Sbjct 520 TGCGTA--ATGATCCATCGGGCTGGAAAAGAACTCAGATCCCTTAAACTTGGTTC-TATT 576
Query 537 G-TTCGTACAGCTGGATCTGATTCTGCTGCACCTTTGCTTAGCG-GATCTTGTCTTTCCC 594
||| | ||||||||| | | || | | ||||||| | | |||| |||||| |||
Sbjct 577 TCTTCCT-CAGCTGGATTT-A--CTAC---ATCTTTGCTGA-CAAGATCCTGTCTTACCC 628
Query 595 CACTAGCATATAATCATGGTTTT-CTTGGGAGTCGCTTGAGAAGCCTACGGCTTTACAAT 653
||||| | | ||| ||||||||| || ||| ||| ||||||||||||| |||||| ||
Sbjct 629 CACTAACTTTTAACCATGGTTTTGCTGGGG-GTCATTTGAGAAGCCTACACCTTTACCAT 687
Query 654 CTCAGACCT-ATAAAATAC-AGGTCCTTATG-CGATGCGTTGTCAGTTTGTCCAAATATC 710
|||||| | || | | | || ||||||| | || |||||||| |||| |||| ||
Sbjct 688 CTCAGAA-TGATGGATTGCGAG-TCCTTATCTCC-TGTGTTGTCAGCTTGTTTAAATCTC 744
Query 711 ACTGATCTGAGGATTGTGGGA 731
|||||| ||| |||||| |||
Sbjct 745 ACTGATTTGAAGATTGTTGGA 765
> Ahg887750 jgi|Araly1|887750|Al_scaffold_1084_1
Length=411
Score = 141 bits (76), Expect = 2e-32
Identities = 210/274 (77%), Gaps = 11/274 (4%)
Strand=Plus/Plus
Query 1002 TTTTTGAGGGAGTTGGGACTTAGCTGCAAAGAAAAT-CTACTCAAGACTCTAATATTGCG 1060
|||||||||| ||||||| ||| ||||| || | | || ||| |||| |||||| ||||
Sbjct 79 TTTTTGAGGGTTTTGGGACATAGATGCAACGACAGTCCT-CTCGAGACACTAATACTGCG 137
Query 1061 CAGCTGCCCAAAACTACAGGAGAAAGAAGTATTGGAA--TTCTGTAACTCACTACTCACA 1118
| || || || |||| |||||||| ||| || || || |||||| || |
Sbjct 138 TAATTGTTTTTCTCTCCAAGAGAGCGAAGTATT-GAAGTTTTTG-AATTCACTAATCGCG 195
Query 1119 GGGAACTTCAAATCCATTCGGCAAATTGATGTTTCAAGTAACAGTGGATTAGCTTCTTCA 1178
|||||||||| |||||||| | |||||||| ||||| |||| || ||||||| |
Sbjct 196 GGGAACTTCATATCCATTCAATACATTGATGTATCAAGCAACAAAGGTTTAGCTT-GT-- 252
Query 1179 GACAGGGGCAAG-AGATGTAACAAACCAAACTTTCCTCTGGAGAGGCTGAAAGAAGAAAG 1237
|| || | ||| ||| | |||||||||||||||| |||| | |||||||||||||||
Sbjct 253 GA-TGGTGAAAGAAGAACTTCCAAACCAAACTTTCCTTTGGAAAAGCTGAAAGAAGAAAG 311
Query 1238 ATCAGATGTCACATTTGTGGCGGATTTTCCATCA 1271
|||||||||||||||||| ||||| ||||| |||
Sbjct 312 ATCAGATGTCACATTTGTTGCGGAATTTCCCTCA 345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61020572490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5