BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G02770.1 Length=835 Score E Sequences producing significant alignments: (Bits) Value Ahg490280 jgi|Araly1|490280|fgenesh2_kg.6__3414__AT4G02770.1 1131 0.0 Ahg918978 jgi|Araly1|918978|scaffold_100259.1 678 0.0 > Ahg490280 jgi|Araly1|490280|fgenesh2_kg.6__3414__AT4G02770.1 Length=765 Score = 1131 bits (612), Expect = 0.0 Identities = 675/704 (96%), Gaps = 9/704 (1%) Strand=Plus/Plus Query 1 ATCTCTTTTCTCTTCTCATCAAAACATACCAAT-AAGCAATTTGCTCATTAGAGAACAGA 59 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||| | Sbjct 1 ATCTCTTTTCTCTTCTCATCAAAACATACC-ATCAAGCAATTTGCTCATTAGAGAACAAA 59 Query 60 Gaaa-aaaaaaaCAATGGCAACTCAAGCCGCCGGGATCTTCAACTCCGCCATAACAACCG 118 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 GAAAGAAAAAAACAATGGCAACTCAAGCCGCCGGGATCTTCAACTCCGCCATAACAACCG 119 Query 119 CCGCAACCTCCGGCGTCAAGAAACTCCACTTTTTCTCAACAACCCACCGTCCCAAATCCC 178 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 120 CCGCAACCTCCGGCGTCAAGAAACTCCACTTTTTCTCAACAACCCACCGTCCGAAATCCC 179 Query 179 TCTCCTTCACCAAAACCGCAATCCGCGCCGAGAAAACAGATTCCTCCGCCGCCGCTGCTG 238 ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| Sbjct 180 TCTCCTTCACCAAAACCTCAATCCGCGCCGAGAAAACAGATTCCAAAGCCGC---TGC-- 234 Query 239 CAGCCCCCGCCACGAAAGAAGCTCCCGTGGGATTCACGCCACCGCAGCTAGACCCAAACA 298 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 235 -AGCCCCCGCCGTGAAAGAAGCTCCCGTGGGATTCACGCCACCGCAGCTAGACCCAAACA 293 Query 299 CACCGTCTCCGATCTTCGCTGGAAGCACCGGTGGTCTTCTACGTAAAGCGCAAGTGGAAG 358 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 294 CACCGTCTCCGATCTTCGCGGGAAGCACCGGTGGTCTTCTACGTAAAGCACAAGTGGAAG 353 Query 359 AGTTCTACGTTATCACGTGGAACTCACCGAAAGAACAGATCTTTGAGATGCCGACAGGAG 418 ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 354 AGTTCTACGTTATTACATGGAACTCACCAAAAGAACAGATCTTTGAGATGCCGACAGGAG 413 Query 419 GAGCAGCGATCATGAGAGAAGGTCCGAATCTTCTGAAGCTAGCGAGGAAAGAGCAGTGTT 478 | ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 414 GTGCAGCGATCATGAGAGAAGGTCCGAATCTGCTGAAGCTAGCGAGGAAAGAACAGTGTT 473 Query 479 TAGCTTTGGGGACAAGGCTTAGATCCAAGTACAAGATCACTTACCAGTTTTACAGAGTGT 538 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 474 TAGCTTTGGGGACAAGGCTTAGATCCAAGTACAAGATTACCTACCAGTTTTACAGAGTGT 533 Query 539 TTCCTAACGGTGAGGTTCAATATCTTCATCCTAAAGATGGTGTTTATCCAGAGAAGGCGA 598 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 534 TTCCTAATGGTGAGGTTCAATATCTTCATCCTAAAGATGGTGTTTATCCAGAGAAGGCGA 593 Query 599 ATCCAGGAAGAGAAGGTGTTGGTCTCAACATGAGATCTATTGGGAAAAATGTTAGTCCCA 658 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 594 ATCCAGGAAGAGAAGGTGTTGGTCTGAACATGAGATCTATTGGGAAAAATGTTAGTCCCA 653 Query 659 TTGAAGTTAAGTTTACTGGCAAACAAAGTTATGATTTGTAAGAT 702 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 TTGAAGTTAAGTTTACTGGCAAACAAAGTTATGATTTGTAAGAT 697 > Ahg918978 jgi|Araly1|918978|scaffold_100259.1 Length=661 Score = 678 bits (367), Expect = 0.0 Identities = 562/655 (86%), Gaps = 17/655 (3%) Strand=Plus/Plus Query 50 AGAGAACAGAGaaa-a-aaaaaaCAATGGCAACTCAAGCCGCCGGGATCTTCAACTCCGC 107 |||||| || |||| | || |||| |||||||||||||||||||| ||||||| | |||| Sbjct 1 AGAGAA-AG-GAAACAGAAGAAACTATGGCAACTCAAGCCGCCGGAATCTTCAGCCCCGC 58 Query 108 CATAACAACCGCCGCAACCTCCGGCGTCAAGAAACTCCACTTTTTCTCAACAACCCACCG 167 |||||||| || | || |||| |||||||||||||||| | |||||||||| |||||| Sbjct 59 CATAACAA---CCACTACTTCCGCCGTCAAGAAACTCCACCTCTTCTCAACAAGCCACCG 115 Query 168 TCCCAAATCCCTCTCCTTCACCAAAACCGCAATCCGCGCCGAGAAAACAGATTCCTCCGC 227 |||||| || |||||||||||||||||||| |||||||||||||||||||| |||| | Sbjct 116 TCCCAAGTCTCTCTCCTTCACCAAAACCGCCATCCGCGCCGAGAAAACAGAGTCCT---C 172 Query 228 CGCCGCTGCTGCAGCCCCCGCCACGAAAGAAGCTCCCGTGGGATTCACGCCACCGCAGCT 287 | | ||||| ||| || | | | |||||||||| || |||||||| || |||||||| Sbjct 173 CTCTGCTGCCCCAG-CCGTG-AAAG-AAGAAGCTCCGGTTGGATTCACTCCCCCGCAGCT 229 Query 288 AGACCCAAACACACCGTCTCCGATCTTCGCTGGAAGCACCGGTGGTCTTCTACGTAAAGC 347 ||||||||||||||| || || |||||||| |||||||| || ||||| || |||||||| Sbjct 230 AGACCCAAACACACCATCACCAATCTTCGCCGGAAGCACAGGAGGTCTCCTCCGTAAAGC 289 Query 348 GCAAGTGGAAGAGTTCTACGTTATCACGTGGAACTCACCGAAAGAACAGATCTTTGAGAT 407 ||||| || || || ||||| ||||| |||||||||||||| ||||| ||||||||||| Sbjct 290 ACAAGTAGAGGAATTTTACGTCATCACATGGAACTCACCGAAGGAACAAATCTTTGAGAT 349 Query 408 GCCGACAGGAGGAGCAGCGATCATGAGAGAAGGTCCGAATCT-TCTGAAGCTAGCGAGGA 466 ||| ||||||||||| ||||| ||||||||||| |||||||| | |||| |||||||||| Sbjct 350 GCCAACAGGAGGAGCTGCGATAATGAGAGAAGGACCGAATCTGT-TGAAACTAGCGAGGA 408 Query 467 AAGAGCAGTGTTTAGCTTTGGGGACAAGGCTT-AGATCCAAGTACAAGATCACTTACCAG 525 |||| ||||| || ||||| || || ||| || || || || |||||||||||||||||| Sbjct 409 AAGAACAGTGCTTGGCTTTAGGTACGAGG-TTGAGGTCTAAATACAAGATCACTTACCAG 467 Query 526 TTTTACAGAGTGTTTCCTAACGGTGAGGTTCAATATCTTCATCCTAAAGATGGTGTTTAT 585 |||||||||||||| |||||||| ||||||||||||||||| || |||||||| |||||| Sbjct 468 TTTTACAGAGTGTTCCCTAACGGAGAGGTTCAATATCTTCACCCGAAAGATGGAGTTTAT 527 Query 586 CCAGAGAAGGCGAATCCAGGAAGAGAAGGTGTTGGTCTCAACATGAGATCTATTGGGAAA 645 |||||||| |||||||||||||||||||||||||| || ||||||||||| || || ||| Sbjct 528 CCAGAGAAAGCGAATCCAGGAAGAGAAGGTGTTGGACTAAACATGAGATCCATCGGTAAA 587 Query 646 AATGTTAGTCCCATTGAAGTTAAGTTTACTGGCAAACAAAGTTATGATTTGTAAG 700 ||||||||||||||||| ||||| || ||||| |||||| |||||||||||||| Sbjct 588 AATGTTAGTCCCATTGAGGTTAAATTCACTGGAAAACAATCTTATGATTTGTAAG 642 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30879562770 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5