BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G02840.2

Length=686
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490274 jgi|Araly1|490274|fgenesh2_kg.6__3408__AT4G02840.1         725    0.0  
  Ahg909985 jgi|Araly1|909985|Al_scaffold_0001_239                     292    2e-78


> Ahg490274 jgi|Araly1|490274|fgenesh2_kg.6__3408__AT4G02840.1
Length=613

 Score =  725 bits (392),  Expect = 0.0
 Identities = 554/623 (89%), Gaps = 48/623 (8%)
 Strand=Plus/Plus

Query  14   CTCCTCCCGCTCTTGCTTCTTGCCATTGCTGTTTCGAGCTCTCCTCAAAGCCCTAATTTT  73
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct  1    CTCCTCCCGCTCTTGCTTCTTGCCATTGCTGTTTCGAGCTCTCCTCAAAGCCCTAA----  56

Query  74   CTCCTCTTCTTCTTCATTCTCTCACCATGAAGCTCGTCAGGTTTTTGATGAAATTGAACA  133
                     || ||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  57   ---------TT-TTC-TTCTCTCACCATGAAGCTCGTTAGGTTTTTGATGAAATTGAACA  105

Query  134  ACGAAACAGTTTCAATCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTGATG  193
            |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||  | |
Sbjct  106  ACGAAACAGTTTCAATTGAGCTCAAGAACGGAACCATTGTTCATGGAACCATTAC--A-G  162

Query  194  AGTACACTAGATTTTACTTGAATCGAGGTGTAGATGTTAGCATGAACACTCATTTAAAAG  253
             ||    ||||| |||   |  |  |  || | |    | | |   || |  || |||||
Sbjct  163  -GTG---TAGATGTTA---G--T--A--TG-A-AC---A-C-T---CA-T--TT-AAAAG  195

Query  254  CTGTGAAACTCACTCTGAAAGGGAAGAATCCAGTTACATTAGACCACTTAAGTGTCAGGG  313
            |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  196  CTGTGAAACTCACTTTGAAAGGGAAGAATCCAGTTACATTAGACCACCTAAGTGTCAGGG  255

Query  314  GAAACAACATTCGCTATTATATTCTTCCGGACAGTTTGAATCTGGAGACTTTGCTGGTTG  373
            |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct  256  GAAACAACATTCGCTATTATATTCTTCCAGACAGTTTGAATCTCGAGACTTTGCTGGTTG  315

Query  374  AAGACACTCCAAGAATCAAACCCAAAAAGCCAACTGCAGGTAAGATTCCAGCAGGTCGGG  433
            ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
Sbjct  316  AAGACACTCCAAGAATCAAGCCCAAAAAGCCAACTGCAGGTAAGATTCCACCAGGTCGTG  375

Query  434  GACGTGGTCGTGGAAGAGGTCGTGGACGTGGCCGTGGTGGTCGTTAAGCATTTTGCAGTA  493
            ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| 
Sbjct  376  GACGTGGTCGTGGAAGAGGTCGTGGACGTGGACGTGGTGGTCGCTAAGCATTTTGCAGTG  435

Query  494  ATCAAAAGTCT-GGTCCTTTTTGGTTTGTAACAGCAGGATTGTAAAAGATCTATCTTGTA  552
            |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  436  ATCAAAAG-CTTGGTCCTTTTTGTTTTGTAACAGCAGGATTGTAAAAGATCTATCTTGTA  494

Query  553  GTGAGATTTGGTGTCACTAAGACAAATTCTTGTTATCTCTTTAAGTTTTCATGAATTTGA  612
            ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| |||||
Sbjct  495  GTGAGATTTGGTGTCACGAAGACAAATCCTTGTTATCTCTT-AAGTTTTCATGATTTTGA  553

Query  613  GATTTGAAACGTTATTGCCAAAC  635
            ||||||| |||||||||||||||
Sbjct  554  GATTTGATACGTTATTGCCAAAC  576


> Ahg909985 jgi|Araly1|909985|Al_scaffold_0001_239
Length=354

 Score =  292 bits (158),  Expect = 2e-78
 Identities = 231/266 (87%), Gaps = 5/266 (2%)
 Strand=Plus/Plus

Query  219  AGGTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTCTGAAAGGGAA  278
            ||||||||||||||| |||||||||||| |||| || || ||||| ||||||||||||||
Sbjct  90   AGGTGTAGATGTTAGTATGAACACTCATCTAAAGGCCGTAAAACTAACTCTGAAAGGGAA  149

Query  279  GAATCCAGTTACATTAGACCACTTAAGTGTCAGGGGAAACAACATTCGCTATTATATTCT  338
             || || ||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct  150  AAACCCGGTTACGTTAGACCACTTAAGTGTTAGGGGAAACAACATTCGGTATTATATCCT  209

Query  339  TCCGGACAGTTTGAATCTGGAGACTTTGCTGGTTGAAGACACTCCAAGAATCAAACCCAA  398
            ||| ||||| || ||||| ||||||||| ||||||| ||||| |||||||||||||||||
Sbjct  210  TCCTGACAGCTTAAATCTCGAGACTTTGTTGGTTGAGGACACACCAAGAATCAAACCCAA  269

Query  399  AAAGCCAACTGCAGGTAAGATTCCAGCAGGTCG-GGGACGTGGTCGTGGAAGAGGTCGTG  457
            |||||||||||| |||| ||   || ||| ||| ||| ||||| |||||||| |||||||
Sbjct  270  AAAGCCAACTGCTGGTAGGAAGACACCAGCTCGCGGG-CGTGGCCGTGGAAGGGGTCGTG  328

Query  458  GACGTGGCCGTG--G-TGGTCGTTAA  480
            |||| |||||||  | ||||||||||
Sbjct  329  GACGCGGCCGTGTTGGTGGTCGTTAA  354


 Score =  143 bits (77),  Expect = 2e-33
 Identities = 85/89 (96%), Gaps = 0/89 (0%)
 Strand=Plus/Plus

Query  100  ATGAAGCTCGTCAGGTTTTTGATGAAATTGAACAACGAAACAGTTTCAATCGAGCTTAAG  159
            ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct  1    ATGAAGCTCGTCAGGTTTTTGATGAAATTGAACAATGAGACAGTTTCAATTGAGCTTAAG  60

Query  160  AACGGAACCATTGTTCATGGAACCATTAC  188
            ||||||||||||||||||||||| |||||
Sbjct  61   AACGGAACCATTGTTCATGGAACTATTAC  89



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25199248137


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5