BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02840.2
Length=686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490274 jgi|Araly1|490274|fgenesh2_kg.6__3408__AT4G02840.1 725 0.0
Ahg909985 jgi|Araly1|909985|Al_scaffold_0001_239 292 2e-78
> Ahg490274 jgi|Araly1|490274|fgenesh2_kg.6__3408__AT4G02840.1
Length=613
Score = 725 bits (392), Expect = 0.0
Identities = 554/623 (89%), Gaps = 48/623 (8%)
Strand=Plus/Plus
Query 14 CTCCTCCCGCTCTTGCTTCTTGCCATTGCTGTTTCGAGCTCTCCTCAAAGCCCTAATTTT 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCCTCCCGCTCTTGCTTCTTGCCATTGCTGTTTCGAGCTCTCCTCAAAGCCCTAA---- 56
Query 74 CTCCTCTTCTTCTTCATTCTCTCACCATGAAGCTCGTCAGGTTTTTGATGAAATTGAACA 133
|| ||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 57 ---------TT-TTC-TTCTCTCACCATGAAGCTCGTTAGGTTTTTGATGAAATTGAACA 105
Query 134 ACGAAACAGTTTCAATCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTGATG 193
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | |
Sbjct 106 ACGAAACAGTTTCAATTGAGCTCAAGAACGGAACCATTGTTCATGGAACCATTAC--A-G 162
Query 194 AGTACACTAGATTTTACTTGAATCGAGGTGTAGATGTTAGCATGAACACTCATTTAAAAG 253
|| ||||| ||| | | | || | | | | | || | || |||||
Sbjct 163 -GTG---TAGATGTTA---G--T--A--TG-A-AC---A-C-T---CA-T--TT-AAAAG 195
Query 254 CTGTGAAACTCACTCTGAAAGGGAAGAATCCAGTTACATTAGACCACTTAAGTGTCAGGG 313
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 196 CTGTGAAACTCACTTTGAAAGGGAAGAATCCAGTTACATTAGACCACCTAAGTGTCAGGG 255
Query 314 GAAACAACATTCGCTATTATATTCTTCCGGACAGTTTGAATCTGGAGACTTTGCTGGTTG 373
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 256 GAAACAACATTCGCTATTATATTCTTCCAGACAGTTTGAATCTCGAGACTTTGCTGGTTG 315
Query 374 AAGACACTCCAAGAATCAAACCCAAAAAGCCAACTGCAGGTAAGATTCCAGCAGGTCGGG 433
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
Sbjct 316 AAGACACTCCAAGAATCAAGCCCAAAAAGCCAACTGCAGGTAAGATTCCACCAGGTCGTG 375
Query 434 GACGTGGTCGTGGAAGAGGTCGTGGACGTGGCCGTGGTGGTCGTTAAGCATTTTGCAGTA 493
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 376 GACGTGGTCGTGGAAGAGGTCGTGGACGTGGACGTGGTGGTCGCTAAGCATTTTGCAGTG 435
Query 494 ATCAAAAGTCT-GGTCCTTTTTGGTTTGTAACAGCAGGATTGTAAAAGATCTATCTTGTA 552
|||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 436 ATCAAAAG-CTTGGTCCTTTTTGTTTTGTAACAGCAGGATTGTAAAAGATCTATCTTGTA 494
Query 553 GTGAGATTTGGTGTCACTAAGACAAATTCTTGTTATCTCTTTAAGTTTTCATGAATTTGA 612
||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| |||||
Sbjct 495 GTGAGATTTGGTGTCACGAAGACAAATCCTTGTTATCTCTT-AAGTTTTCATGATTTTGA 553
Query 613 GATTTGAAACGTTATTGCCAAAC 635
||||||| |||||||||||||||
Sbjct 554 GATTTGATACGTTATTGCCAAAC 576
> Ahg909985 jgi|Araly1|909985|Al_scaffold_0001_239
Length=354
Score = 292 bits (158), Expect = 2e-78
Identities = 231/266 (87%), Gaps = 5/266 (2%)
Strand=Plus/Plus
Query 219 AGGTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTCTGAAAGGGAA 278
||||||||||||||| |||||||||||| |||| || || ||||| ||||||||||||||
Sbjct 90 AGGTGTAGATGTTAGTATGAACACTCATCTAAAGGCCGTAAAACTAACTCTGAAAGGGAA 149
Query 279 GAATCCAGTTACATTAGACCACTTAAGTGTCAGGGGAAACAACATTCGCTATTATATTCT 338
|| || ||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 150 AAACCCGGTTACGTTAGACCACTTAAGTGTTAGGGGAAACAACATTCGGTATTATATCCT 209
Query 339 TCCGGACAGTTTGAATCTGGAGACTTTGCTGGTTGAAGACACTCCAAGAATCAAACCCAA 398
||| ||||| || ||||| ||||||||| ||||||| ||||| |||||||||||||||||
Sbjct 210 TCCTGACAGCTTAAATCTCGAGACTTTGTTGGTTGAGGACACACCAAGAATCAAACCCAA 269
Query 399 AAAGCCAACTGCAGGTAAGATTCCAGCAGGTCG-GGGACGTGGTCGTGGAAGAGGTCGTG 457
|||||||||||| |||| || || ||| ||| ||| ||||| |||||||| |||||||
Sbjct 270 AAAGCCAACTGCTGGTAGGAAGACACCAGCTCGCGGG-CGTGGCCGTGGAAGGGGTCGTG 328
Query 458 GACGTGGCCGTG--G-TGGTCGTTAA 480
|||| ||||||| | ||||||||||
Sbjct 329 GACGCGGCCGTGTTGGTGGTCGTTAA 354
Score = 143 bits (77), Expect = 2e-33
Identities = 85/89 (96%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 100 ATGAAGCTCGTCAGGTTTTTGATGAAATTGAACAACGAAACAGTTTCAATCGAGCTTAAG 159
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1 ATGAAGCTCGTCAGGTTTTTGATGAAATTGAACAATGAGACAGTTTCAATTGAGCTTAAG 60
Query 160 AACGGAACCATTGTTCATGGAACCATTAC 188
||||||||||||||||||||||| |||||
Sbjct 61 AACGGAACCATTGTTCATGGAACTATTAC 89
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25199248137
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5