BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G02840.2 Length=686 Score E Sequences producing significant alignments: (Bits) Value Ahg490274 jgi|Araly1|490274|fgenesh2_kg.6__3408__AT4G02840.1 725 0.0 Ahg909985 jgi|Araly1|909985|Al_scaffold_0001_239 292 2e-78 > Ahg490274 jgi|Araly1|490274|fgenesh2_kg.6__3408__AT4G02840.1 Length=613 Score = 725 bits (392), Expect = 0.0 Identities = 554/623 (89%), Gaps = 48/623 (8%) Strand=Plus/Plus Query 14 CTCCTCCCGCTCTTGCTTCTTGCCATTGCTGTTTCGAGCTCTCCTCAAAGCCCTAATTTT 73 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTCCTCCCGCTCTTGCTTCTTGCCATTGCTGTTTCGAGCTCTCCTCAAAGCCCTAA---- 56 Query 74 CTCCTCTTCTTCTTCATTCTCTCACCATGAAGCTCGTCAGGTTTTTGATGAAATTGAACA 133 || ||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 57 ---------TT-TTC-TTCTCTCACCATGAAGCTCGTTAGGTTTTTGATGAAATTGAACA 105 Query 134 ACGAAACAGTTTCAATCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTGATG 193 |||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | | Sbjct 106 ACGAAACAGTTTCAATTGAGCTCAAGAACGGAACCATTGTTCATGGAACCATTAC--A-G 162 Query 194 AGTACACTAGATTTTACTTGAATCGAGGTGTAGATGTTAGCATGAACACTCATTTAAAAG 253 || ||||| ||| | | | || | | | | | || | || ||||| Sbjct 163 -GTG---TAGATGTTA---G--T--A--TG-A-AC---A-C-T---CA-T--TT-AAAAG 195 Query 254 CTGTGAAACTCACTCTGAAAGGGAAGAATCCAGTTACATTAGACCACTTAAGTGTCAGGG 313 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 196 CTGTGAAACTCACTTTGAAAGGGAAGAATCCAGTTACATTAGACCACCTAAGTGTCAGGG 255 Query 314 GAAACAACATTCGCTATTATATTCTTCCGGACAGTTTGAATCTGGAGACTTTGCTGGTTG 373 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 256 GAAACAACATTCGCTATTATATTCTTCCAGACAGTTTGAATCTCGAGACTTTGCTGGTTG 315 Query 374 AAGACACTCCAAGAATCAAACCCAAAAAGCCAACTGCAGGTAAGATTCCAGCAGGTCGGG 433 ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| | Sbjct 316 AAGACACTCCAAGAATCAAGCCCAAAAAGCCAACTGCAGGTAAGATTCCACCAGGTCGTG 375 Query 434 GACGTGGTCGTGGAAGAGGTCGTGGACGTGGCCGTGGTGGTCGTTAAGCATTTTGCAGTA 493 ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 376 GACGTGGTCGTGGAAGAGGTCGTGGACGTGGACGTGGTGGTCGCTAAGCATTTTGCAGTG 435 Query 494 ATCAAAAGTCT-GGTCCTTTTTGGTTTGTAACAGCAGGATTGTAAAAGATCTATCTTGTA 552 |||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 436 ATCAAAAG-CTTGGTCCTTTTTGTTTTGTAACAGCAGGATTGTAAAAGATCTATCTTGTA 494 Query 553 GTGAGATTTGGTGTCACTAAGACAAATTCTTGTTATCTCTTTAAGTTTTCATGAATTTGA 612 ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| ||||| Sbjct 495 GTGAGATTTGGTGTCACGAAGACAAATCCTTGTTATCTCTT-AAGTTTTCATGATTTTGA 553 Query 613 GATTTGAAACGTTATTGCCAAAC 635 ||||||| ||||||||||||||| Sbjct 554 GATTTGATACGTTATTGCCAAAC 576 > Ahg909985 jgi|Araly1|909985|Al_scaffold_0001_239 Length=354 Score = 292 bits (158), Expect = 2e-78 Identities = 231/266 (87%), Gaps = 5/266 (2%) Strand=Plus/Plus Query 219 AGGTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTCTGAAAGGGAA 278 ||||||||||||||| |||||||||||| |||| || || ||||| |||||||||||||| Sbjct 90 AGGTGTAGATGTTAGTATGAACACTCATCTAAAGGCCGTAAAACTAACTCTGAAAGGGAA 149 Query 279 GAATCCAGTTACATTAGACCACTTAAGTGTCAGGGGAAACAACATTCGCTATTATATTCT 338 || || ||||| ||||||||||||||||| ||||||||||||||||| |||||||| || Sbjct 150 AAACCCGGTTACGTTAGACCACTTAAGTGTTAGGGGAAACAACATTCGGTATTATATCCT 209 Query 339 TCCGGACAGTTTGAATCTGGAGACTTTGCTGGTTGAAGACACTCCAAGAATCAAACCCAA 398 ||| ||||| || ||||| ||||||||| ||||||| ||||| ||||||||||||||||| Sbjct 210 TCCTGACAGCTTAAATCTCGAGACTTTGTTGGTTGAGGACACACCAAGAATCAAACCCAA 269 Query 399 AAAGCCAACTGCAGGTAAGATTCCAGCAGGTCG-GGGACGTGGTCGTGGAAGAGGTCGTG 457 |||||||||||| |||| || || ||| ||| ||| ||||| |||||||| ||||||| Sbjct 270 AAAGCCAACTGCTGGTAGGAAGACACCAGCTCGCGGG-CGTGGCCGTGGAAGGGGTCGTG 328 Query 458 GACGTGGCCGTG--G-TGGTCGTTAA 480 |||| ||||||| | |||||||||| Sbjct 329 GACGCGGCCGTGTTGGTGGTCGTTAA 354 Score = 143 bits (77), Expect = 2e-33 Identities = 85/89 (96%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 100 ATGAAGCTCGTCAGGTTTTTGATGAAATTGAACAACGAAACAGTTTCAATCGAGCTTAAG 159 ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| Sbjct 1 ATGAAGCTCGTCAGGTTTTTGATGAAATTGAACAATGAGACAGTTTCAATTGAGCTTAAG 60 Query 160 AACGGAACCATTGTTCATGGAACCATTAC 188 ||||||||||||||||||||||| ||||| Sbjct 61 AACGGAACCATTGTTCATGGAACTATTAC 89 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25199248137 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5