BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02880.2
Length=2702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490272 jgi|Araly1|490272|fgenesh2_kg.6__3406__AT4G02880.1 2663 0.0
Ahg470307 jgi|Araly1|470307|fgenesh2_kg.1__261__AT1G03290.1 688 0.0
Ahg490179 jgi|Araly1|490179|fgenesh2_kg.6__3313__AT4G05320.4 137 3e-31
> Ahg490272 jgi|Araly1|490272|fgenesh2_kg.6__3406__AT4G02880.1
Length=1999
Score = 2663 bits (1442), Expect = 0.0
Identities = 1841/2025 (91%), Gaps = 62/2025 (3%)
Strand=Plus/Plus
Query 58 TGTTTCTCACAATTCTCAAAAATCTCTCATCCGAA-T--TGCGCCTTTTCCGCTTCCTTT 114
||||||||||||||||| ||||||||||||||||| | |||||||||||||||||| ||
Sbjct 1 TGTTTCTCACAATTCTC-AAAATCTCTCATCCGAATTGCTGCGCCTTTTCCGCTTCC-TT 58
Query 115 TGCTCTGTCAAATCTCTCAACCGGAAAAATCTCGGGAAGGTTCGTCTGATCCAATTCTGA 174
| |||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||
Sbjct 59 TACTCTGTCAAATCTCTC-ACCGGAAAAATCTCGGAAAGGTTCGTGTGATCCAATTCTG- 116
Query 175 AGATTTTGAAAAACCCACCGAGAACTTCGAGATTTAATTGAATTTTTCACTGATGGGTTA 234
||| |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||
Sbjct 117 AGAATTTGAAAAACCCACCGAGAAATTCGAGATTTAGTTGATTTTTTCACTGATGGGTTA 176
Query 235 CAAAGCAGTTTACCGATCTCTCACGGAATTGTTTCCACAGATTGATGCAAGGCTTTTAAA 294
|||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 177 CAAAGCGGTTTATCGATCTCTCACTGAATTGTTTCCTCAGATTGATGCAAGGCTTTTAAA 236
Query 295 AGCTGTTGCTATTGAGCACCCAAAGGATGTTAATGAAGCTGCAGCTGTAGTTGTTTCAGA 354
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 237 AGCTGTTGCTATTGAGCACCCAAAGGATGCTAATGAAGCTGCAGCTGTAGTTGTTTCAGA 296
Query 355 GATTGTTCCTTTCTTTTACCCTAATTTGGCTGATAGTTCTACTCAACCTGAGAACAAGAC 414
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | |
Sbjct 297 GATTGTTCCTTTCTTTTACCCTAATTTGGCTGATAATTCTACACAACCTGAGAACAGGTC 356
Query 415 ACCCGGAAATGTGCCTACCGAAGTTGAAAATGCAGTAGAACGTGATATGCCATTCAGTGT 474
|||||||||||||||| | | || ||||||||||| ||||| | | ||||
Sbjct 357 ACCCGGAAATGTGCCT-----A----ACAA---AGTAGAACGTGCTATGCAAAACGGTGT 404
Query 475 GTTGTCTGGTTCAGAGA-TGG--GTGGTTCATATTCAGG-A-TCTGCCTCTATGGCTTTT 529
||||||||||||||||| || | ||| | |||||| | | | || || ||||| ||
Sbjct 405 GTTGTCTGGTTCAGAGACAGGTTCTTCTTCCTCTTCAGGAAGTAT-CC-CTCTGGCTGTT 462
Query 530 GA--AT-ATCATGAAACAAGGGCCCCAGTTACTGAATCGGTTTCTAAG-AGGAATCAGTT 585
|| | |||||||||||||||||||| |||||||||| ||||| || ||||| |||||
Sbjct 463 GATTGTGATCATGAAACAAGGGCCCCAATTACTGAATCAATTTCT-AGTAGGAACCAGTT 521
Query 586 GACACATGTTATGCCAAATGTTGTTGTTGATATTCAGAGAAAAGGTAAGATCGGGTTGAG 645
||||||||||||||||||||||| | ||||||||||||| || | ||||||||||||||
Sbjct 522 GACACATGTTATGCCAAATGTTGATCTTGATATTCAGAGCAACGCAAAGATCGGGTTGAG 581
Query 646 CGGATCGGATGAGTCTGGAGTGGTTTCCTCAG-AACCCCCTGTCTCCTGTCAGGCAGGAG 704
||||||||| |||||||||||||||||||||| || |||| ||||| | |||||| ||||
Sbjct 582 CGGATCGGAAGAGTCTGGAGTGGTTTCCTCAGAAAACCCC-GTCTCTTTTCAGGCGGGAG 640
Query 705 CCAAATCGACTGGCGATGATTGGCAAGGTGTTGAGTTTCACAGTACA-G--GTAATCAAG 761
| ||||||||| || ||| ||| |||||||||| |||||||| |||| | |||||| ||
Sbjct 641 CTAAATCGACTAGCCATGGTTGTCAAGGTGTTGGGTTTCACATTACAGGTAGTAATCTAG 700
Query 762 CAGAAGCTAGCACAAGCGCAGATTCAGAAGATGCTGTGCATAAGCTGGTTTATCCTGCAG 821
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 701 CAGAAGCTAGCACAAGCTCAGAGTCAGAAGATGCTGTGCATAAGCTGGTTTATCCTGCAG 760
Query 822 ACAATTTGGCAATTACACAGAACTCACATCCTCTTCAAATTAGATTTGGGAGTATCGATG 881
|||||| |||||| |||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 761 ACAATTCGGCAATGACACAGAAATCACCTCCTCTTCAAATTAGATTTGGGAGTATCGATA 820
Query 882 TTGTGAACGAGACATCAAGTGGTTCGTTGGCTGTTGAAAATAGTGATGCCGAGTTGAGTG 941
||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 821 TTGTGAACGAGACATCAAGTGGTTCATTGGCTGTTGAAAATAGCGATGCAGAGTTGAGTG 880
Query 942 GTTCAAATCTTGTGGATGAGATATCAAAGGGCTCTTTGGCCGATGAAAATGGTGATCCAG 1001
|||||||||||||||||| || |||||||||||||||||| | |||||||||||||||||
Sbjct 881 GTTCAAATCTTGTGGATGTGACATCAAAGGGCTCTTTGGCAGTTGAAAATGGTGATCCAG 940
Query 1002 AGCTGGATGGTGCTGTTAGCTCTGTTGGTAACAGATCAACCCAGGGATGCAACATGGTCC 1061
|||||| ||||||| |||||||||||| || |||||||||||||||||||||||| ||||
Sbjct 941 AGCTGGTTGGTGCTTTTAGCTCTGTTGTTAGCAGATCAACCCAGGGATGCAACATTGTCC 1000
Query 1062 ACCTTGAACAGATCATTGAAGATGCCAAAAGTAACAAGAGAACCTTGTTCACTGTGATGG 1121
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1001 ACCTTGAACAGATCATTGAAGATGCCAAAAGTAACAAGAAAACCTTGTTCACTGTGATGG 1060
Query 1122 AGTCGATTATGAATCTGATGAGAGAAGTTGAACTTCAAGAGAAGGAGGCAGAAAAGGCAA 1181
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1061 AGTCGATTATGAATCTGATGAGAGAAGTTGAACTTCAAGAAAAGGATGCAGAAAAGGCAA 1120
Query 1182 AGGAAGATGCTAGTATAGGAGGCTTTGATACTCTTGACAAGGTGGAGGAGCTGAAGAAGA 1241
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 AGGAAGATGCTTCTAGAGGAGGCTTTGATACTCTTGACAAGGTGGAGGAGCTGAAGAAGA 1180
Query 1242 TGCTGGAACATGCGAAGGAGGCAAATGACATGGCTGCTGGAGAAGTTTATGGGGAGAGGT 1301
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1181 TGCTGGAACATGCGAAGGAGGCAAATGACATGGATGCTGGAGAAGTTTATGGGGAGAGGT 1240
Query 1302 CAATTTTGACCACTGAAGTTAATGAGCTTGAAAATCGCTTGATCAGCTTATCAGAAGAAC 1361
|||||||||||||||||||||| |||||||||||||||||| ||| ||||||||| ||||
Sbjct 1241 CAATTTTGACCACTGAAGTTAACGAGCTTGAAAATCGCTTGCTCAACTTATCAGAGGAAC 1300
Query 1362 GAGACAACTCTCTCTCTGTTCTTGATGAGATGCGTGTAGATCTTGAAATAAGACTAGCGA 1421
||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1301 GAGACAAATCTCTTTCTGTTCTTGATGAGATGCGTGAAGTTCTTGAAATAAGACTAGCGG 1360
Query 1422 CAGCTTTGGGGATAAAAAATGCTGCTGAGCAAGAAAAACAGGAAAAAGAAGGGTCTGCAC 1481
|||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1361 CAGCGCTGGAGATAAAAAATGCTGCTGAGCAAGAAAAGCAGGAAAAAGAAGGGTCTGCAC 1420
Query 1482 GCAAGGCATTTGCTGAACAAGAAGCGATCATGGAGAGAGTTGTCCAAGAATCCAAGCTTC 1541
|||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct 1421 GCAAGGCATTTGCTGAACAAGAAGCGATCATGGAAAAAGTTGTCCAAGAATCAAAGCTTC 1480
Query 1542 TACAGCAGGAGGCAGAGGAAAACTCCAAGCTGCGAGAGTTCCTTATGGATCATGGTCGAA 1601
||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1481 TACAGCAAGAGGCAGAAGAAAACTCCAAGCTGCGAGAGTTTCTTATGGATCATGGTCGGA 1540
Query 1602 TTGTTGATTCCTTACAAGGAGAAATCTCTGTGATCTGTCAAGACATCCGACACTTGAAAG 1661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 TTGTTGATTCCTTACAAGGAGAAATCTCTGTGATCTGTCAAGACATCCGACACTTGAAAG 1600
Query 1662 AGAAATTCGACAACCGAGTGCCATTGAGCCAATCAATCT-CCTCAAGCCAGACTAGCTGT 1720
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1601 AGAAATTCGACAACCGAGTGCCATTGAGCCAATCAAT-TACCTCAAGCCAGACTAGCTGT 1659
Query 1721 AAACTGGCTTCTTCCGCCTCATCCATGAAGAGCTTATTGAC-GGAGAAGCCTTTGGAAGC 1779
||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| ||
Sbjct 1660 AAACTGGCTTCTTCCGCATCATCCATGAAGAGCTTATTG-CTGGAGAAGCCTTTGGAGGC 1718
Query 1780 ATCTTATGAAACACCTGAAGCCTCGAGCAATAACAAGAGCCCAAAAGCTTCTG-TTAATG 1838
||||||||||||| |||||||||||||||| |||| |||||||||||||| || |||| |
Sbjct 1719 ATCTTATGAAACAGCTGAAGCCTCGAGCAACAACACGAGCCCAAAAGCTT-TGGTTAACG 1777
Query 1839 A---A---------CGTAAGGAGCTTCTGGATGACGGCTGGGACTTCTTTGACAAAGAGA 1886
| | ||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1778 AGGGAAAAGATGATCGTAAGGAGCTTCTGGAAGAGGGCTGGGACTTTTTTGACAAAGAGA 1837
Query 1887 CAGAGCTCTAAGTGTCTTCTTTTCAGTAGATT--ATCGGTGCTA-GAATAAAAGAGATAT 1943
||||||||||||||||||| || ||| ||||| ||| || || |||||||||||||||
Sbjct 1838 CAGAGCTCTAAGTGTCTTCATTACAGAAGATTTCATCAGTTTTAAGAATAAAAGAGATAT 1897
Query 1944 GAAGGGATTCTGGGTTC-TGCTCTATGTAGAGTAAAGCTTGGATCTTTGATCTAATCTAC 2002
|||||| || ||||| | |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1898 GAAGGGCTTTTGGGT-CGTGCTCTATATAGAGTAAAGCTTGGATCTTTGAGCTAATCTAC 1956
Query 2003 CGTTAGTATAAAACATCTATTGAGCTCTCTT-TTATTTTTCTTCT 2046
| ||||| |||| ||||||||||||||| || |||||||||||||
Sbjct 1957 CATTAGTGTAAA-CATCTATTGAGCTCT-TTATTATTTTTCTTCT 1999
> Ahg470307 jgi|Araly1|470307|fgenesh2_kg.1__261__AT1G03290.1
Length=1840
Score = 688 bits (372), Expect = 0.0
Identities = 593/696 (85%), Gaps = 30/696 (4%)
Strand=Plus/Plus
Query 1036 ATCAACCCAGGGATGCAAC-ATGGTCCACCTTGAACAGATCATTGAAGATGCCAAAAGTA 1094
||||||||| | ||||| | || | ||||||||| |||| ||||| |||||||||||||
Sbjct 948 ATCAACCCATGTATGCAGCGTTGAT-CACCTTGAAGAGATTATTGAGGATGCCAAAAGTA 1006
Query 1095 ACAAGAGAACCTTGTTCACTGTGATGGAGTCGATTATGAATCTGATGAGAGAAGTTGAAC 1154
|||||| ||||||||| |||| |||||| || ||| |||| | ||||||||||||||||
Sbjct 1007 ACAAGAAAACCTTGTTTACTGAGATGGAAACGGTTACGAATTTAATGAGAGAAGTTGAAC 1066
Query 1155 TTCAAGAGAAGGAGGCAGAAAAGGCAAAGGAAGATGCTAG-TATAGGAGGCTTT-GATAC 1212
||||||||||||| ||||| ||| ||||||| || ||| | || ||||| ||| |||||
Sbjct 1067 TTCAAGAGAAGGATGCAGAGAAGTCAAAGGAGGAAGCT-GCTAGGGGAGG-TTTAGATAC 1124
Query 1213 TCTTGACAAGGTGGAGGAGCTGAAGAAGATGCTGGAACATGCGAAGGAGGCAAATGACAT 1272
|||| | ||||| |||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 1125 TCTTCAAAAGGTCGAGGAGCTCAAGAAGATGCTGGAACATGCAAAGGAAGCAAATGACAT 1184
Query 1273 GGC-TGCTGGAGAAGTTTATGGGGAGAGGTCAATTTTGACCACTGAAGTTAATGAGCTTG 1331
| | |||||||||||| ||||| |||| |||||||||| |||||||||| || |||||||
Sbjct 1185 G-CATGCTGGAGAAGTATATGGAGAGAAGTCAATTTTGGCCACTGAAGTAAAAGAGCTTG 1243
Query 1332 AAAATCGCTTGATCAGCTTATCAGAAGAACGAGACAACTCTCTCT-CTGTTCTTGATGAG 1390
|||| || ||| ||| |||||||||||||||| |||| ||||| | || | |||||||||
Sbjct 1244 AAAACCGGTTGCTCAACTTATCAGAAGAACGAAACAAATCTCT-TGCTATCCTTGATGAG 1302
Query 1391 ATGCGTGTA-GATCTTGAAATAAGACTAGCGACAGCT-TTGGGGATAAAAAATG-CTGCT 1447
||||| | | | ||| |||||||||||||||||||| ||| | || ||||| | |||||
Sbjct 1303 ATGCGAGGAAG-TCTCGAAATAAGACTAGCGACAGCACTTGAG-ATGAAAAA-GACTGCT 1359
Query 1448 GAGCAAGAAAA-ACAGGAA-AAAGAAGGGTCTGCACGCAAGGCATTTGCTGAACAAGAAG 1505
||||||||||| | | || ||||||| ||||||| |||||| ||||||| |||||||
Sbjct 1360 GAGCAAGAAAAGAAA--AACAAAGAAGATTCTGCACTTAAGGCACTTGCTGAGCAAGAAG 1417
Query 1506 CGATCATGGAGAGAGTTGTCCAAGAATCCAAGCTTCTACAGCAGGAGGCAGAGGAAAACT 1565
| | |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1418 CCAACATGGAGAAAGTGGTCCAAGAATCAAAGCTTCTACAGCAGGAGGCAGAGGAAAATT 1477
Query 1566 CCAAGCTGCGAGAGTTCCTTATGGATCATGGTC-GAATTGTTGATTCCTTACAAGGAGAA 1624
||||||| |||||||| |||||||||| ||||| || |||||||||||||||||||||||
Sbjct 1478 CCAAGCTTCGAGAGTTTCTTATGGATCGTGGTCAGA-TTGTTGATTCCTTACAAGGAGAA 1536
Query 1625 ATCTCTGTGATCTGTCAAGACATCCGACA-CT-T-GAAAGAGAAATTCGACAACCGAGTG 1681
|| ||||||||||||||||| | || | || | ||||||||||||||| |||||||||
Sbjct 1537 ATTTCTGTGATCTGTCAAGATGT--GA-AGCTGTTGAAAGAGAAATTCGAAAACCGAGTG 1593
Query 1682 CCATTGAGCCAA-TCAATCTCCTCAAGCCAGACTAG 1716
||||| | |||| |||||||||||||||| |||||
Sbjct 1594 CCATTAA-CCAAATCAATCTCCTCAAGCCTCACTAG 1628
> Ahg490179 jgi|Araly1|490179|fgenesh2_kg.6__3313__AT4G05320.4
Length=1516
Score = 137 bits (74), Expect = 3e-31
Identities = 91/99 (92%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 2583 TCATTAGAAAGAAAGGTATAACACAGGAACGGAAACATAGTTGAACAATTATTCATCAGG 2642
|||||||||||||||| || | |||||||||||||||||||| | |||||||| ||||||
Sbjct 1471 TCATTAGAAAGAAAGGGAT-A-ACAGGAACGGAAACATAGTTCATCAATTATTTATCAGG 1414
Query 2643 GGCTTTACAAGGCCCCAAAACACAAACCACCAAAGTTTT 2681
||||||||||||||||||||||||||||||||| ||||
Sbjct 1413 AGCTTTACAAGGCCCCAAAACACAAACCACCAAATTTTT 1375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101929495620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5