BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02920.2
Length=1744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943421 jgi|Araly1|943421|scaffold_603965.1 2017 0.0
> Ahg943421 jgi|Araly1|943421|scaffold_603965.1
Length=1291
Score = 2017 bits (1092), Expect = 0.0
Identities = 1234/1302 (95%), Gaps = 12/1302 (1%)
Strand=Plus/Plus
Query 273 TTCAGCTACAACAACCAAAAAATGATCAAGCTTTGCTTCATGACTTCTCATGGTTATTCA 332
|||| || |||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 TTCATCTTCAACAAAC-AAAAATGATCAAGCTTTGCTTCATGACTTCTCATGGCTATTCA 59
Query 333 ATCCCTGGCCTTGGTCTTCCTCAAGACCTCTGCAACACCGAAATCATCAAGCAGAATAGC 392
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 60 ATTCCTGGCCTTGGTCTTCCTCAAGACCTCTGTAACACCGAAATCATCAAGCAGAATAGC 119
Query 393 CGGTCTCATCTGGTGAATCCCGGAGCAAGACAAGAGATCATACCTGCAAGCTCCTTCAAT 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGGTCTCATCTGGTGAATCCCGGAGCAAGACAAGAGATCATACCTGCAAGCTCCTTCAAT 179
Query 453 CTGAATACAGAACTCTTGGAACCATGGAAACCGGTTTCTTCATTTAGCCAATTCGTGGAG 512
|||||| |||| || | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 180 CTGAATCCAGA-CT-T-GGAACCATGGAAACCTGTTTCTTCATTTAGCCAATTCGTGGAG 236
Query 513 ATTGATTCAGCCATGATGAAACCTCTGCTCATGGATGTTCATGAGACGGCACCAGAATCT 572
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ATTGATTCAGCCATGATGAAACCTCTGCTCATGGATGTTCATGAGACGGCACCAGAATCG 296
Query 573 CTGATTTTGAGCTTTGGAATCGCTGATAAGTTTGCAAGACAAGAAAAGGTGATGGAGTTT 632
||| |||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||||
Sbjct 297 CTGGTTTTAAGCTTTGGAATTGCTGATAAGTCTGCGAGACAAGAAAAGGTGATGGAGTTT 356
Query 633 CTTCTGTCTCAGTCAGAGGAGTTCAAGGAAAAAGGATTCGATATGTCGCTGTTAAATGAA 692
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 357 CTTCTGTCTCAGTCAGAGGAGTTCAAGGAAAAAGGATTCAATATGTCTCTGTTAAATGAA 416
Query 693 TTGATGGAGTTTGAGTCTATGAAATCCAGTTCTCAGCTACGACCGTATGATACTTCCTCT 752
|||||||| || ||| |||||||||||||||||||||||||| | |||||||||||||||
Sbjct 417 TTGATGGAATTAGAGGCTATGAAATCCAGTTCTCAGCTACGAGCATATGATACTTCCTCT 476
Query 753 GTTCTTTACTTGAATCAAGAATTAGGGAAACCGGTTTTGGATCTCGTTAGGGATATGATG 812
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 477 GTTCTTTACTTGAATCAAGAATTAGGGAAACCGGTTTTGGATCTCGTTGGGGATATGATG 536
Query 813 GAGAATCCAGAGTTCTCTGTGCGATCGAATGGTCATGTTCTGTTCTCTTCAAGTAGCAAT 872
|| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 537 GATAATCCAGAGCTCTCTGTGCGATCGAATGGTCACGTTCTGTTCTCTTCAAGTAGCAAT 596
Query 873 CCTGAGTTGAATGATCTACTTTCTATTGCTTCCGAGTTCAATTTGTCAAGGAATTCAACA 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGTGAGTTGAATGATCTACTTTCTATTGCTTCCGAGTTCAATTTGTCAAGGAATTCAACA 656
Query 933 ACAAAATGGAGACAGCTCTCACCGCTTATCCCACACTTTCAGAGGTTTGAAAGTGACGTA 992
| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 657 A-AA--TGGAGACAGCTCTCACCGCTTATCCCACACTTTCAGAGGTTTGAAAGTGAAGTA 713
Query 993 TTTACACCGGCTAAGCTGAAAGCAGTTACAGTGCTAGCACCTTTGAAGAGTCCTGAGAAA 1052
|| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 714 TTAACACCAGCTAAGCTGAAAGCAGTTACAGT---AGCACCTTTGAAGAGTCCTGAGAAA 770
Query 1053 AGCAGGCTCAAGTCACCAAGGAAACACAACACGAAGCGAAAAGCTAAAGAGAGGGACCTA 1112
| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 771 ACCAGGCTCAAGTCACCAAGGAAACACAACACGAAGCAAAAAGCCAAAGAGAGGGACCTA 830
Query 1113 TACAAAAGAAATCATCTCCACGCTTACGAGAGCCTTCTCTCTTTAATGATAGGCAATGAT 1172
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 831 TACAAAAGAAACCATCTCCACGCTTACGAGAGCCTTCTGTCTTTAATGATAGGCAATGAT 890
Query 1173 CATCGACACAAACACACAACAGTACTCTCTTTACAGAAATCATGTGGAGAGCTCTCAGAG 1232
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 CATCAACACAAACACACAACAGTACTCTCTTTACAGAAATCATGTGGAGAGCTCTCAGAG 950
Query 1233 CTTCTGACTCAGTTCTCTATCACTGCTGCTGGAACTGGAATCGCTGTGCTCTTT-TCTGT 1291
|||||||||||||||||| |||||| |||||||||||||||||||||||| ||| |||||
Sbjct 951 CTTCTGACTCAGTTCTCTGTCACTGTTGCTGGAACTGGAATCGCTGTGCT-TTTCTCTGT 1009
Query 1292 CGTATGTAGCCTTGCTTCAAGGCGTGTACCCTTTTGCGCAAATAAGTTCTTCGACACTGG 1351
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1010 CGTCTGTAGCCTTGCTTCAAGGCGTGTACCCTTTTGCGCAAACAAGTTCTTTGACACTGG 1069
Query 1352 GCTTGGTTTGAGTTTGGTAATACTGTCATGGGCTGTGAATAGACTCAGGGAGGTGATTGT 1411
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1070 GCTTGGTTTGAGTTTGGTAATACTGTCTTGGGCTGTGAATAGACTCAGGGAAGTGATTGT 1129
Query 1412 TCATGTCAATAGGAAAGCGAACAAGCCATGTTCAAGTTTGAAAGATGACGAAATCATAAA 1471
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 1130 TCATGTCAATAGGAAAGCGAACAAACCCTGTTCAAGTTTGAAGGATGACGAAATCATAAA 1189
Query 1472 CAGTGTGGAGAGAAGTATGAAGGAGGTTTACTACAGAGCTGCAACGGTAATCGCGGTGTT 1531
||||||||||| |||||| ||||||||||||||||||||||| || ||| ||||||||||
Sbjct 1190 CAGTGTGGAGAAAAGTATCAAGGAGGTTTACTACAGAGCTGCCACTGTACTCGCGGTGTT 1249
Query 1532 TGCGCTTAGGTTTGCATGTTGAAAAATCGGGGTGAGAGGTAA 1573
||| |||||||||||||||||| || || ||||||||||||
Sbjct 1250 TGCACTTAGGTTTGCATGTTGAGAACTCACGGTGAGAGGTAA 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65439040910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5