BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G02990.1 Length=1914 Score E Sequences producing significant alignments: (Bits) Value Ahg490263 jgi|Araly1|490263|fgenesh2_kg.6__3397__AT4G02990.1 2647 0.0 > Ahg490263 jgi|Araly1|490263|fgenesh2_kg.6__3397__AT4G02990.1 Length=1815 Score = 2647 bits (1433), Expect = 0.0 Identities = 1673/1784 (94%), Gaps = 35/1784 (2%) Strand=Plus/Plus Query 1 AAAAAACCTTACCCGCTCCTCTAAAACCCTCGTCTTCTCCGATATCTTTCCTCAGCTCCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 1 AAAAAACCTTACCCGCTCCTCTAAAACCCTCGTCTTCTCCGATATCTTTCCTTATCTCCG 60 Query 61 GTAAAGAATGAAGATTAGGTTCTGTAATGGCTTCACAAAGCCTGGGTTTTTGCTAGTTCA 120 |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 61 GTAAAGAATGAAGATTAGGTTCTGTAGCGGCTTCACAAAGCCTGGGTTTTTGTTAGTTCA 120 Query 121 CTTTGAGCCACCATC-tttttttGCCGTTAGATCTCGTTCACTCTCTGATTCCACTTATG 179 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 121 CTTTGAGCCACCATCGTTTTTTT-CCGTTAGATCTCGTTCACTCTCTGATTCCACTTATG 179 Query 180 GCAACTTATGCAACCACAAGAAGAGACCTGGGACTGGAATTGGTCTAACTGTTCAATGCG 239 ||||| | |||||||||||||||| | ||||||||| | ||||||||||||| Sbjct 180 GCAAC---T------ACAAGAAGAGACCTGGAATTGGAATTGG--T-ACTGTTCAATGCG 227 Query 240 CTATTGCAAATCGGAGATTTTCTTCACGTTCTTTGGA-T--TCACCGAGAAGAGAAAGGT 296 |||||||||||||||||||||||||||||||| |||| | ||||||| ||||||||||| Sbjct 228 CTATTGCAAATCGGAGATTTTCTTCACGTTCTGTGGATTCATCACCGAAAAGAGAAAGGT 287 Query 297 CTTCTCGTTCTTCTTCTTCTTCGGGAAGGGATAGGGATAGAGATAAGGATAAGGGAAGAG 356 | ||||| || ||||||| | | || |||||||| ||||||||||| ||||||| Sbjct 288 CGTCTCG----TC--CTTCTTC--G-A--GA-AGGGATAGGGATAAGGATAAAGGAAGAG 335 Query 357 ATTCTAAGTCTTTGTATAGTCGTCCTAGTTTGTTAGATATGAATAAGGAGAAAGCTGCTA 416 ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 336 ATTCTCAGTCTTTGTATAGTCGTCCTAGTTTGTTAGAGATGAATAAGGAGAAAGCTGCTA 395 Query 417 ATCGTGCTAAGGTTTATGAGTTCTTGCGTGGGATTGGGATTGTTCCTGATGAGCTTGATG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 396 ATCGTGCTAAGGTTTATGAGTTCTTGCGTGGGATTGGGATTGTTCCTGATGAGCTTGATG 455 Query 477 GCCTTGAACTCCCTGTAACAGCTGATGTGATGAAAGAGCGTGTCGAGTTTCTTCACAAGT 536 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 456 GTCTTGAACTCCCTGTAACAGCTGATGTGATGAAAGAGCGTGTGGAGTTTCTTCACAAGT 515 Query 537 TAGGGCTTACCATTGAAGATATCAACAATTACCCTCTTGTTCTTGGTTGTAGCGTGAAGA 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 516 TAGGGCTTACCATTGAAGATATCAACAATTACCCTCTTGTTCTTGGTTGTAGCGTGAAGA 575 Query 597 AGAACATGGTTCCGGTTCTTGATTATCTCGGGAAACTAGGCGTCAGGAAATCGACTTTCA 656 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 576 AGAACATGGTTCCGGTTCTTGATTATCTCGGGAAACTAGGCGTGAGGAAATCGACTTTCA 635 Query 657 CTGAGTTTCTTAGAAGATACCCGCAGGTTCTTCACT-CTAGCGTTGTTATAGATCTTGCA 715 |||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||| Sbjct 636 CTGAGTTTCTTAGAAGATACCCGCAGGTTCTTCA-TGCTAGTGTTGTTATAGATCTTGCA 694 Query 716 CCGGTGGTTAAGTATCTTCAAGGACTGGATATTAAACCGAGTGATGTACCTCGGGTGCTT 775 |||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 695 CCGGTGGTCAAGTATCTTCAAGGACTGGATATTAAACCCAGCGATGTACCTCGGGTGCTT 754 Query 776 GAGAGGTATCCAGAAGTTTTGGGGTTTAAGCTGGAAGGGACTATGAGCACATCAGTCGCT 835 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 755 GAGAGGTATCCAGAAGTTTTAGGGTTTAAGCTGGAAGGGACTATGAGCACATCAGTCGCG 814 Query 836 TATTTGGTTGGTATAGGTGTAGCTAGGAGGGAGATTGGGGGTATTTTAACACGGTACCCT 895 |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 815 TATTTGGTGGGTATAGGTGTAGCTAGGAGGGAGATTGGTGGTGTTTTAACACGGTACCCT 874 Query 896 GAGATTTTGGGAATGCGGGTAGCTCGGATAATTAAGCCTCTCGTGGAGTATCTCGAGGTT 955 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 875 GAGATTTTGGGAATGCGGGTAGCTCGGATAATTAAGCCTCTCGTGGAGTATCTCGAGCAC 934 Query 956 CTTGGTATTCCGAGACTGGCTGCAGCTAGGTTGATAGAGAAGCGGCCTCACATACTCGGG 1015 |||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| Sbjct 935 CTTGGTATTCCGAGACTGGCTGTAGCTAGGTTGATTGAGAAGCGGCCTCACATTCTCGGG 994 Query 1016 TTTGAATTGGATGATACGGTGAAACCAAACGTGCAAATCCTGCAAGATTTCAATGTCAGA 1075 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 995 TTCGAATTGGATGATACGGTGAAACCAAACGTGCAAATCCTGCAAGATTTCAATGTCAGA 1054 Query 1076 GAAACATCTCTTCCTTCTATAATTGCGCAGTATCCTGAAATCATCGGAATCGACCTTAAA 1135 ||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||| ||| Sbjct 1055 GAAACATGTCTTCCTTCTATAATTGCACAGTATCCTGAAATCATAGGAATCGACCTGAAA 1114 Query 1136 CCTAAGCTCGACACACAGAGGAAGCTACTTTGTTCAGCCATTCATCTAAATCCAGAGGAT 1195 |||||||| || || || | |||||||||||||||||||||| ||||||||||||||||| Sbjct 1115 CCTAAGCTTGAGACGCAAAAGAAGCTACTTTGTTCAGCCATTGATCTAAATCCAGAGGAT 1174 Query 1196 CTTGGCTCTTTGATCGAGAGAATGCCGCAGTTTGTTAGTCTCAGCGAGTCTCCTATGTTA 1255 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1175 ATCGGCTCTTTGATCGAGAGAATGCCGCAGTTTGTTAGTCTCAGCGAGTCTCCTATGTTA 1234 Query 1256 AAGCACATTGATTTCCTTACCAAGTGTGGATTTTCGATAGACCAAACAAGGGAAATGGTA 1315 ||||||||||| ||||||||||||||||| ||||| || |||||||| |||||||||||| Sbjct 1235 AAGCACATTGACTTCCTTACCAAGTGTGGGTTTTCAATCGACCAAACGAGGGAAATGGTA 1294 Query 1316 ATCGGGTGTCCTCAGGTTCTGGCTTTGAACCTCGGAATAATGAAACTCAGCTTTGAGTAC 1375 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1295 ATCGGATGTCCACAGGTTCTGGCTTTGAACCTCGGAATAATGAAACTCAGCTTTGAATAC 1354 Query 1376 TTCCAAAAGGAAATGAAAAGACCTCTTCAAGACCTTGTGGATTTCCCCGCATTCTTTACG 1435 |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 1355 TTCCAAAAGGAAATGAGAAGACCTCTTCAAGATCTTGTGGATTTCCCCGCATTCTTTACC 1414 Query 1436 TATGGGCTTGAGTCCACGGTAAAGCCGAGACACAAGAAGATAATCAAGAAGGGAATCAAA 1495 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| Sbjct 1415 TATGGGCTTGAGTCCACGGTAAAGCCGAGGCACAAGAAGATAATCAAGAAAGGAATAAAA 1474 Query 1496 TGTTCATTGGCTTGGATGCTAAACTGTTCAGATGAGAAGTTCGAACAGAGAATGAGCTAC 1555 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1475 TGTTCATTGGCTTGGATGCTCAACTGTTCAGATGAGAAGTTCGAACAGAGAATGAGCTAC 1534 Query 1556 GACACAATAGATATAGAAGAGGTAGAAACTGATCCATCTTCTTTTGACATGAATACATTG 1615 ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 1535 GACACAATAGATATAGAAGAGGTAGAATCTGATCCATCTTCTTTTGACATGAGTACATTA 1594 Query 1616 ATGCAACCTGAAAGAGAGGAGGAATCTGATTCCGAGTACGAGGAAGAAGAAGATGATGAC 1675 |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 1595 ATGCAACCCGAAAGAGAGGAGGAATCTGATTCCGAGTACGAGGAAGAAGAAAATGACGAC 1654 Query 1676 GACGAGGAGTTTGCATAAACCCGGAGTT--C--AACAAAGAAAAGGTCCAAATACAGACA 1731 |||||||||||||| |||||| |||||| | |||||| ||||| ||||||| |||||| Sbjct 1655 GACGAGGAGTTTGCTTAAACCTGGAGTTTGCTTAACAAAAAAAAGCTCCAAATGCAGACA 1714 Query 1732 ATGAATCGAAGAACAAGCTTCATGTCTTGATGTATCATCATCAT 1775 |||||| |||| |||||||| |||||||||| ||||||||||| Sbjct 1715 ATGAATTGAAGTACAAGCTTTGTGTCTTGATGGATCATCATCAT 1758 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71914382560 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5