BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G02990.1

Length=1914
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490263 jgi|Araly1|490263|fgenesh2_kg.6__3397__AT4G02990.1        2647    0.0  


> Ahg490263 jgi|Araly1|490263|fgenesh2_kg.6__3397__AT4G02990.1
Length=1815

 Score = 2647 bits (1433),  Expect = 0.0
 Identities = 1673/1784 (94%), Gaps = 35/1784 (2%)
 Strand=Plus/Plus

Query  1     AAAAAACCTTACCCGCTCCTCTAAAACCCTCGTCTTCTCCGATATCTTTCCTCAGCTCCG  60
             |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct  1     AAAAAACCTTACCCGCTCCTCTAAAACCCTCGTCTTCTCCGATATCTTTCCTTATCTCCG  60

Query  61    GTAAAGAATGAAGATTAGGTTCTGTAATGGCTTCACAAAGCCTGGGTTTTTGCTAGTTCA  120
             ||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||
Sbjct  61    GTAAAGAATGAAGATTAGGTTCTGTAGCGGCTTCACAAAGCCTGGGTTTTTGTTAGTTCA  120

Query  121   CTTTGAGCCACCATC-tttttttGCCGTTAGATCTCGTTCACTCTCTGATTCCACTTATG  179
             ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  121   CTTTGAGCCACCATCGTTTTTTT-CCGTTAGATCTCGTTCACTCTCTGATTCCACTTATG  179

Query  180   GCAACTTATGCAACCACAAGAAGAGACCTGGGACTGGAATTGGTCTAACTGTTCAATGCG  239
             |||||   |      |||||||||||||||| | |||||||||  | |||||||||||||
Sbjct  180   GCAAC---T------ACAAGAAGAGACCTGGAATTGGAATTGG--T-ACTGTTCAATGCG  227

Query  240   CTATTGCAAATCGGAGATTTTCTTCACGTTCTTTGGA-T--TCACCGAGAAGAGAAAGGT  296
             |||||||||||||||||||||||||||||||| |||| |  ||||||| |||||||||||
Sbjct  228   CTATTGCAAATCGGAGATTTTCTTCACGTTCTGTGGATTCATCACCGAAAAGAGAAAGGT  287

Query  297   CTTCTCGTTCTTCTTCTTCTTCGGGAAGGGATAGGGATAGAGATAAGGATAAGGGAAGAG  356
             | |||||    ||  |||||||  | |  || |||||||| ||||||||||| |||||||
Sbjct  288   CGTCTCG----TC--CTTCTTC--G-A--GA-AGGGATAGGGATAAGGATAAAGGAAGAG  335

Query  357   ATTCTAAGTCTTTGTATAGTCGTCCTAGTTTGTTAGATATGAATAAGGAGAAAGCTGCTA  416
             ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  336   ATTCTCAGTCTTTGTATAGTCGTCCTAGTTTGTTAGAGATGAATAAGGAGAAAGCTGCTA  395

Query  417   ATCGTGCTAAGGTTTATGAGTTCTTGCGTGGGATTGGGATTGTTCCTGATGAGCTTGATG  476
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  396   ATCGTGCTAAGGTTTATGAGTTCTTGCGTGGGATTGGGATTGTTCCTGATGAGCTTGATG  455

Query  477   GCCTTGAACTCCCTGTAACAGCTGATGTGATGAAAGAGCGTGTCGAGTTTCTTCACAAGT  536
             | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  456   GTCTTGAACTCCCTGTAACAGCTGATGTGATGAAAGAGCGTGTGGAGTTTCTTCACAAGT  515

Query  537   TAGGGCTTACCATTGAAGATATCAACAATTACCCTCTTGTTCTTGGTTGTAGCGTGAAGA  596
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  516   TAGGGCTTACCATTGAAGATATCAACAATTACCCTCTTGTTCTTGGTTGTAGCGTGAAGA  575

Query  597   AGAACATGGTTCCGGTTCTTGATTATCTCGGGAAACTAGGCGTCAGGAAATCGACTTTCA  656
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  576   AGAACATGGTTCCGGTTCTTGATTATCTCGGGAAACTAGGCGTGAGGAAATCGACTTTCA  635

Query  657   CTGAGTTTCTTAGAAGATACCCGCAGGTTCTTCACT-CTAGCGTTGTTATAGATCTTGCA  715
             |||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||
Sbjct  636   CTGAGTTTCTTAGAAGATACCCGCAGGTTCTTCA-TGCTAGTGTTGTTATAGATCTTGCA  694

Query  716   CCGGTGGTTAAGTATCTTCAAGGACTGGATATTAAACCGAGTGATGTACCTCGGGTGCTT  775
             |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct  695   CCGGTGGTCAAGTATCTTCAAGGACTGGATATTAAACCCAGCGATGTACCTCGGGTGCTT  754

Query  776   GAGAGGTATCCAGAAGTTTTGGGGTTTAAGCTGGAAGGGACTATGAGCACATCAGTCGCT  835
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct  755   GAGAGGTATCCAGAAGTTTTAGGGTTTAAGCTGGAAGGGACTATGAGCACATCAGTCGCG  814

Query  836   TATTTGGTTGGTATAGGTGTAGCTAGGAGGGAGATTGGGGGTATTTTAACACGGTACCCT  895
             |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct  815   TATTTGGTGGGTATAGGTGTAGCTAGGAGGGAGATTGGTGGTGTTTTAACACGGTACCCT  874

Query  896   GAGATTTTGGGAATGCGGGTAGCTCGGATAATTAAGCCTCTCGTGGAGTATCTCGAGGTT  955
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct  875   GAGATTTTGGGAATGCGGGTAGCTCGGATAATTAAGCCTCTCGTGGAGTATCTCGAGCAC  934

Query  956   CTTGGTATTCCGAGACTGGCTGCAGCTAGGTTGATAGAGAAGCGGCCTCACATACTCGGG  1015
             |||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||
Sbjct  935   CTTGGTATTCCGAGACTGGCTGTAGCTAGGTTGATTGAGAAGCGGCCTCACATTCTCGGG  994

Query  1016  TTTGAATTGGATGATACGGTGAAACCAAACGTGCAAATCCTGCAAGATTTCAATGTCAGA  1075
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  995   TTCGAATTGGATGATACGGTGAAACCAAACGTGCAAATCCTGCAAGATTTCAATGTCAGA  1054

Query  1076  GAAACATCTCTTCCTTCTATAATTGCGCAGTATCCTGAAATCATCGGAATCGACCTTAAA  1135
             ||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct  1055  GAAACATGTCTTCCTTCTATAATTGCACAGTATCCTGAAATCATAGGAATCGACCTGAAA  1114

Query  1136  CCTAAGCTCGACACACAGAGGAAGCTACTTTGTTCAGCCATTCATCTAAATCCAGAGGAT  1195
             |||||||| || || || | |||||||||||||||||||||| |||||||||||||||||
Sbjct  1115  CCTAAGCTTGAGACGCAAAAGAAGCTACTTTGTTCAGCCATTGATCTAAATCCAGAGGAT  1174

Query  1196  CTTGGCTCTTTGATCGAGAGAATGCCGCAGTTTGTTAGTCTCAGCGAGTCTCCTATGTTA  1255
              | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1175  ATCGGCTCTTTGATCGAGAGAATGCCGCAGTTTGTTAGTCTCAGCGAGTCTCCTATGTTA  1234

Query  1256  AAGCACATTGATTTCCTTACCAAGTGTGGATTTTCGATAGACCAAACAAGGGAAATGGTA  1315
             ||||||||||| ||||||||||||||||| ||||| || |||||||| ||||||||||||
Sbjct  1235  AAGCACATTGACTTCCTTACCAAGTGTGGGTTTTCAATCGACCAAACGAGGGAAATGGTA  1294

Query  1316  ATCGGGTGTCCTCAGGTTCTGGCTTTGAACCTCGGAATAATGAAACTCAGCTTTGAGTAC  1375
             ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1295  ATCGGATGTCCACAGGTTCTGGCTTTGAACCTCGGAATAATGAAACTCAGCTTTGAATAC  1354

Query  1376  TTCCAAAAGGAAATGAAAAGACCTCTTCAAGACCTTGTGGATTTCCCCGCATTCTTTACG  1435
             |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  1355  TTCCAAAAGGAAATGAGAAGACCTCTTCAAGATCTTGTGGATTTCCCCGCATTCTTTACC  1414

Query  1436  TATGGGCTTGAGTCCACGGTAAAGCCGAGACACAAGAAGATAATCAAGAAGGGAATCAAA  1495
             ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct  1415  TATGGGCTTGAGTCCACGGTAAAGCCGAGGCACAAGAAGATAATCAAGAAAGGAATAAAA  1474

Query  1496  TGTTCATTGGCTTGGATGCTAAACTGTTCAGATGAGAAGTTCGAACAGAGAATGAGCTAC  1555
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1475  TGTTCATTGGCTTGGATGCTCAACTGTTCAGATGAGAAGTTCGAACAGAGAATGAGCTAC  1534

Query  1556  GACACAATAGATATAGAAGAGGTAGAAACTGATCCATCTTCTTTTGACATGAATACATTG  1615
             ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| 
Sbjct  1535  GACACAATAGATATAGAAGAGGTAGAATCTGATCCATCTTCTTTTGACATGAGTACATTA  1594

Query  1616  ATGCAACCTGAAAGAGAGGAGGAATCTGATTCCGAGTACGAGGAAGAAGAAGATGATGAC  1675
             |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct  1595  ATGCAACCCGAAAGAGAGGAGGAATCTGATTCCGAGTACGAGGAAGAAGAAAATGACGAC  1654

Query  1676  GACGAGGAGTTTGCATAAACCCGGAGTT--C--AACAAAGAAAAGGTCCAAATACAGACA  1731
             |||||||||||||| |||||| ||||||  |  |||||| ||||| ||||||| ||||||
Sbjct  1655  GACGAGGAGTTTGCTTAAACCTGGAGTTTGCTTAACAAAAAAAAGCTCCAAATGCAGACA  1714

Query  1732  ATGAATCGAAGAACAAGCTTCATGTCTTGATGTATCATCATCAT  1775
             |||||| |||| ||||||||  |||||||||| |||||||||||
Sbjct  1715  ATGAATTGAAGTACAAGCTTTGTGTCTTGATGGATCATCATCAT  1758



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 71914382560


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5