BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03170.1
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493975 jgi|Araly1|493975|fgenesh2_kg.7__3408__AT4G03170.1 804 0.0
Ahg949550 jgi|Araly1|949550|scaffold_801437.1 767 0.0
Ahg473790 jgi|Araly1|473790|fgenesh2_kg.1__3744__AT4G03170.1 213 2e-54
> Ahg493975 jgi|Araly1|493975|fgenesh2_kg.7__3408__AT4G03170.1
Length=726
Score = 804 bits (435), Expect = 0.0
Identities = 567/627 (90%), Gaps = 24/627 (4%)
Strand=Plus/Plus
Query 106 GAAGAGGATATAGATGATGAAGACGATATAGATGACGAGGTTATAGATGATGA-AGACT- 163
||||| |||| |||||||||||| ||||||||| || | | ||| ||| | ||| |
Sbjct 73 GAAGAAGATACAGATGATGAAGAGGATATAGAT---GA--TGA-AGACGAT-ACAGA-TG 124
Query 164 ATGAGGTTGCGTC-CCTTCCATTATTACAAGA-AAGCC-AAGCTAATCAAAAGCAGTCTA 220
||||||||||||| | ||||||||||||| | ||||| ||| | ||||||||||||||
Sbjct 125 ATGAGGTTGCGTCGAC-TCCATTATTACAA-ATAAGCCAAAG-TCGTCAAAAGCAGTCTA 181
Query 221 GGGAGAGGGAAGAAGAAA-CTGaaaaaaaTCAACCTAAGAGGTTTAAGAAACAGAACATG 279
|| ||||||||||| ||| |||| |||||||||||||||||| |||| ||||| |||||
Sbjct 182 GGAAGAGGGAAGAA-AAATCTGACAAAAATCAACCTAAGAGGGTTAAAAAACATAACATC 240
Query 280 ATGAAAATAAATATCCATGACTTTTCAGAAGAAACTCTGAGGTTAATTGAGGTATGGTAC 339
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 ATGAAAATAAATATCGATGACTTTTCAGAAGAAACTCTGAGGTCAATTGAGGTATGGTAC 300
Query 340 GAAGCTGAACTCGATCCACAAGATATATTCGGCGATAATGAGGTGACGAGGCTATTCAGC 399
||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 301 AAAGATGAACTCGATCCACAAGATATATTCGGCGATAATGAGGTGACGAAGCAATTCAGC 360
Query 400 AGACCGATAAAGAAGCAGTTGATGTCGAGCGATGTCGATAAAGATCAATGCATGCTCATG 459
| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 361 AAACCGATAAAGAAGCAGTTGATGTCGAGCGACGTCGATAAAGATCAATGCAGGCTCATG 420
Query 460 TTATCGAAGGAGCAAGTGAAGGAGAAGATGCTTCCTTTTCTAGAAGATTCAGAGAATCCG 519
||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 421 TTATCTAAGGAGCAAGTGAAGGAGAAGATGCTTCCTTTTCTAGAAGAATCAGAGGATCCG 480
Query 520 GTAAAGGG-GATTGATGTTTCGGTGTATGGACCAGACGGGAAAGTTCAACAGATGGAGTT 578
|||||||| | ||||||||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct 481 GTAAAGGGAG-TTGATGTTTCGGTGTATGGACCAGACGGGGCAGTTCAAAAGATGAAGTT 539
Query 579 CAAGATGTGGAATGGGGATAAAACACCTGTGTTAACTTCAGGGTGGAAGCAGTTTGTGGA 638
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 540 CAAGATTTGGAATGGGGATAAAACACCTGTGTTAACTTCAGGATGGAAGCAGTTTGTGGC 599
Query 639 AGATTATGGTCTT-TCGATGACTTGTGATTTTGTCACTGTTTGGATGTTTAGGCACATAA 697
||||||||||||| | |||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct 600 AGATTATGGTCTTGT-GATGACTTCTGATTTTATCATTGTTTGGATGTTTAGGCACATAA 658
Query 698 AGACTCGAAAGC-TTTGCTTTGCTATT 723
|||||||||| | ||||||||||||||
Sbjct 659 AGACTCGAAA-CATTTGCTTTGCTATT 684
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 105 TGAAGAGGATATAGATGATGAAGACGATA 133
|||||||||||||||||||||||||||||
Sbjct 90 TGAAGAGGATATAGATGATGAAGACGATA 118
> Ahg949550 jgi|Araly1|949550|scaffold_801437.1
Length=805
Score = 767 bits (415), Expect = 0.0
Identities = 577/652 (88%), Gaps = 23/652 (4%)
Strand=Plus/Plus
Query 112 GATATAGATGATGAAGACGATATAGATGACGAGGTTATAGATGATGA-AGACT-ATGAGG 169
|||| |||||||||||| ||||||||| || | | ||||||| | ||| | ||||||
Sbjct 147 GATACAGATGATGAAGAGGATATAGAT---GA--TGA-AGATGAT-ACAGA-TGATGAGG 198
Query 170 TTGCGTCC-CTTCCATTATTACAAGAAAGCCAAGCTAATCAAAAGCAGTCTAGGGAGAGG 228
|||||||| | |||||||||||||| |||||||||| |||||||| |||||||| |||||
Sbjct 199 TTGCGTCCAC-TCCATTATTACAAGTAAGCCAAGCTCATCAAAAGAAGTCTAGGAAGAGG 257
Query 229 GAAGAAGAA--A-CTGaaaaaaaTCAACCTAAGAGGTTTAAGAAACAGAACATGATGAAA 285
|||||| || | |||| |||||||||||||||||| |||||||||||| ||| ||||||
Sbjct 258 GAAGAAAAAGTATCTGACAAAAATCAACCTAAGAGGGTTAAGAAACAGAGCATCATGAAA 317
Query 286 ATAAATATCCATGACTTTTCAGAAGAAACTCTGAGGTTAATTGAGGTATGGTACGAAGCT 345
||||||||| | |||||||||||||| |||| ||||| |||||||||||||||| |||||
Sbjct 318 ATAAATATCAAAGACTTTTCAGAAGAGACTCGGAGGTCAATTGAGGTATGGTACAAAGCT 377
Query 346 GAACTCGATCCACAAGATATATTCGGCGATAATGAGGTGACGAGGCTATTCAGCAGACCG 405
||| | |||||||| || |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 378 GAAATTGATCCACAGGAAATATTCGGCGATAATGAGGTGACGAGGCAATTCAGCAAACCG 437
Query 406 ATAAAGAAGCAGTTGATGTCGAGCGATGTCGATAAAGATCAATGCATGCTCATGTTATCG 465
|||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||
Sbjct 438 ATAAAGAAGCAGTTGATGTCGAGCGACGTCGATAAAGATCAAAGCAGGCTCATGTTATCT 497
Query 466 AAGGAGCAAGTGAAGGAGAAGATGCTTCCTTTTCTAGAAGATTCAGAGAATCCGGTAAAG 525
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 498 AAGGAGCAAGTGAAGGAGAAGATGCTTCCTTTTCTAGAAGAATCAGAGAATCCGGTAAAG 557
Query 526 GGGATTGATGTTTCGGTGTATGGACCAGACGGGAAAGTTCAACAGATGGAGTTCAAGATG 585
||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
Sbjct 558 GGGGTTGATGTTTCGGTGTATGGACCAGACGGAAAAGTTCAACAGATGAAGTTCAAGTTC 617
Query 586 TGGAATGGGGATAAAACACCTGTGTTAACTTCAGGG-TGGAAGCAGTTTG-TGGAAGATT 643
||||||||||||||||||||||| |||||| | ||| |||||| |||||| || || | |
Sbjct 618 TGGAATGGGGATAAAACACCTGTATTAACTAC-GGGATGGAAGGAGTTTGTTGCAA-AAT 675
Query 644 ATGGTCTTTC-GATGACTTGTGATTTTGTCACTGTTTGGATGTTTAGGCACATAAAGACT 702
||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 676 GTGGTC-TTCTAATGACTTCCGATTTTGTCACTGTTTGGATGTTTAGGCACATAGAGACT 734
Query 703 CGAAAGCTTTGCTTTGCTATTCACTACGTTAAATTTTCTTTAAGAGA-TTAA 753
|| || ||||||||||||||||| || || |||| |||||| ||| ||||
Sbjct 735 CGGAATATTTGCTTTGCTATTCACCGCGCTAGATTTCCTTTAA-AGAATTAA 785
> Ahg473790 jgi|Araly1|473790|fgenesh2_kg.1__3744__AT4G03170.1
Length=687
Score = 213 bits (115), Expect = 2e-54
Identities = 153/170 (90%), Gaps = 7/170 (4%)
Strand=Plus/Plus
Query 169 GTTGCGTCC-CTTCCATTATTACAAGAAAGCCAA-GCTAATCAAAAGCAGTCTAGGGAGA 226
||||||||| || ||||||||||||| ||||||| | | ||||||||||||||||| | |
Sbjct 145 GTTGCGTCCACT-CCATTATTACAAGTAAGCCAAAG-TCATCAAAAGCAGTCTAGGAAAA 202
Query 227 GGGAAGAAGAAA-CTGaaaaaaaTCAACCTAAGAGGTTTAAGAAACAGAACATGATGAAA 285
|||||||| ||| |||| |||||||||||||||||| |||||||||||||||| ||||||
Sbjct 203 GGGAAGAA-AAATCTGATAAAAATCAACCTAAGAGGGTTAAGAAACAGAACATCATGAAA 261
Query 286 ATAAATATCCATGACTTTTCAGAAGAAACTCTGAGGTTAATTGAGG-TAT 334
||||||||| ||||||||||| ||||||||||||||| |||||||| |||
Sbjct 262 ATAAATATCAATGACTTTTCAAAAGAAACTCTGAGGTCAATTGAGGATAT 311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27753483576
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5