BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G03180.1 Length=1004 Score E Sequences producing significant alignments: (Bits) Value Ahg943398 jgi|Araly1|943398|scaffold_603942.1 843 0.0 > Ahg943398 jgi|Araly1|943398|scaffold_603942.1 Length=596 Score = 843 bits (456), Expect = 0.0 Identities = 528/563 (94%), Gaps = 3/563 (1%) Strand=Plus/Plus Query 164 CTCGCGATAATGAAGAAATTCTATCAAAATGCTGATCATGAGACTGATAAATCCAAATCG 223 ||||||| ||||||||||||||||||||| ||| ||||| ||||||| |||||||||| Sbjct 12 CTCGCGACAATGAAGAAATTCTATCAAAAAAATGAGCATGATACTGATAGATCCAAATCG 71 Query 224 GCGGAGACGAAGAAGAGGAAGAACATGAGGAGATTAGGAGGCGGTGGTCTTTCTCTCCAA 283 ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 72 ACGGAGACGAAGAAGAGGAAGAACATGAAGAGATTGGGAGGCGGTGGTCTTTCTCTCCAA 131 Query 284 ACTTTTGCCAACATGAAATCGGAAAATAATCGCTATAACCCTTCTTTGATCAAAAAGCAA 343 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 132 ACTTTTGCCAACATGAAATCGGAAAACAATCGCTATAACCCTTCTTTGATCAAAAGGCAA 191 Query 344 AAAGAGTTCTACAAGAATGCAAAGTATGTGAGCAAGTTTAGGAAGTCGTTGAAGCAGCAG 403 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 192 AAAGAGTTCTACAAGAATGCAAAGTATGTGAGCAAGTTTAGGAAGTCGGTGAAGCAGCAG 251 Query 404 AACATTCCTGATAAGAATGAGACTGGAGAGACTAGTAAGGTAGGtgatgatgatgatgat 463 |||||| ||| ||||||||||||||||||| |||||||||| |||||||| |||||| Sbjct 252 AACATTGATGACAAGAATGAGACTGGAGAGAGTAGTAAGGTA---GATGATGACGATGAT 308 Query 464 gatAAGCGGAAGGGTAAATCTAATAAGAGAATTGGTGTAGAGGATTTGTACAAGCAGACa 523 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309 GATAAGCAGAAGGGTAAATCTAATAAGAGAATTGGTGTAGAGGATTTGTACAAGCAGACA 368 Query 524 agagaagagatggagagagtaaggaaggagagagagGCAATGTTTCAGGCGAAGAAGGAA 583 |||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||| Sbjct 369 AGAGAAGAGATGGAGAAAGTAAGGAAGGAGAGAGAGGCTACGTTTCAGGCGAAGAAGGAA 428 Query 584 GCGAAAGAAGAGGCTGAATCTAGGAGGAAAGAAGCAAAGGGGAAAATGTTGAGGAAGACT 643 |||||||||||||||||||| |||||||||| |||||||||||||||| |||| |||||| Sbjct 429 GCGAAAGAAGAGGCTGAATCCAGGAGGAAAGTAGCAAAGGGGAAAATGATGAGAAAGACT 488 Query 644 CGACATGGTCAGCCTGTAATGAAATACAGAATTGAGCATCTTCTTGAATCCATCAAGAAA 703 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 489 CGACATGGTCAGCCTGTAATGAAATACAGAATAGAACATCTTCTTGAATCCATCAAGAAA 548 Query 704 TCTGCCGGAATCAACGAAATCGC 726 ||||| |||||| ||| || ||| Sbjct 549 TCTGCTGGAATCGACGGAAGCGC 571 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37322335743 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5