BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03200.1
Length=2784
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943396 jgi|Araly1|943396|scaffold_603940.1 3751 0.0
> Ahg943396 jgi|Araly1|943396|scaffold_603940.1
Length=2482
Score = 3751 bits (2031), Expect = 0.0
Identities = 2352/2505 (94%), Gaps = 29/2505 (1%)
Strand=Plus/Plus
Query 114 GTAATTCTAAAAAATCAATCAGCAATGCTGATGAAAAGTCTTCACTTGTTGTCTTCCTCA 173
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1 GTAATTCT-AAAAATCAATCAGCAATGGTGATGAAAAGTCTTCACTTGTTGTCTTCCACA 59
Query 174 ATCCTCCTCCACCGCTTTGCTTCTCGCAGCATTGCATCTTTGTCTACTCTACCCAGAAGA 233
|||||||||||||||||||| ||| ||| || | ||| | |||||||||||
Sbjct 60 ATCCTCCTCCACCGCTTTGCGTCT-------TTG--TC--T-TCT--T-TACCCAGAAGA 104
Query 234 AGAAATATCGTCCGTATACATAACCCTTCGTTTTCTAGCCCTTTCCCGCCGATTCTCTCT 293
|||| |||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||
Sbjct 105 AGAATTATCGTCCGTATACGTAATCCTTCGTTTTCAAGCCCTTTCCCGCCGATTCTCTCT 164
Query 294 AGACCCATTTCCTCAGGCAAGGTCTTAGCCATGGCGGAAGAGTCTTCTTCTTCTTCGACC 353
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 165 AGACCCATTTCCTCAGGCAAGGTCTTGGCCATGGCGGAAGA---ATCTTCTTCTTCGACC 221
Query 354 TCGTCAACATCTCAGAAACATACCAACCGTTTAGCCGCTGAACACAGTCCTTATCTTCTT 413
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 222 TCGTCAACATCTCAGAAACATACCAACCGTTTAGCCGCCGAACACAGTCCTTATCTTCTT 281
Query 414 CAACACGCGCATAATCCGGTTGATTGGTACCCATGGGGAGAAGAAGCTTTTGAAGAAGCA 473
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 282 CAACACGCCCATAATCCGGTTGATTGGTATCCATGGGGAGAAGAAGCTTTTGAAGAAGCA 341
Query 474 AGGAAGAGAGACGTGCCCATCTTCTTATCAATTGGATACAGTACCTGTCACTGGTGCCAT 533
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 AGGAAGAGAGATGTGCCCATCTTCTTATCAATTGGATACAGTACCTGTCACTGGTGCCAT 401
Query 534 GTCATGGAAGTTGAGTCATTTGAAGATGAAGAAGTGGCAAAACTCTTGAACAATTCATTC 593
|||||||||||||||||||||||||||||| |||||||||||||||| ||| |||| |||
Sbjct 402 GTCATGGAAGTTGAGTCATTTGAAGATGAACAAGTGGCAAAACTCTTAAACGATTCGTTC 461
Query 594 GTTAGTATCAAGGTTGATCGAGAAGAGCGGCCTGATGTCGACAAGGTTTATATGTCGTTC 653
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 462 GTTAGTATCAAGGTGGATCGAGAAGAGCGGCCTGATGTAGACAAGGTTTATATGTCGTTC 521
Query 654 GTCCAGGCTCTGTATGGTGGAGGAGGGTGGCCACTGTCGGTATTCCTTTCACCTGATTTA 713
||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 522 GTCCAGGCTCTATACGGTGGAGGAGGGTGGCCACTGTCAGTCTTCCTTTCACCTGATTTA 581
Query 714 AAGCCGTTGATGGGTGGAACCTACTTTCCTCCAAATGACAATTATGGACGACCAGGATTC 773
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 582 AAGCCGTTGATGGGTGGAACCTACTTTCCTCCAAATGACAATTATGGACGCCCAGGATTC 641
Query 774 AAAACTCTCCTTAAGAAGGTGAAAGATGCGTGGAACAGTAAGAGGGATACTCTAGTGAAG 833
||||| ||||||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 642 AAAACCCTCCTTAAGAAGGTGAAAGATGCGTGGGATAGTAAGAGGGATACTCTTGTGAAG 701
Query 834 AGTGGTACATATGCTATCGAAGAACTCTCTAAAGCTTTATCTGCAAGTACTGGAGCCGAT 893
||||||||||||||||| |||||||| | ||||||||||| |||||| |||||||||||
Sbjct 702 AGTGGTACATATGCTATTGAAGAACTGACAAAAGCTTTATCCGCAAGTGCTGGAGCCGAT 761
Query 894 AAATTGTCAGATGGGATTTCTCGGGAGGCTGTGAGTACATGTGCAAAACAACTTTCTCGG 953
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 762 AAATTGTCAGATGGGATTTCTCGGGAGGCTGTGAGTATATGTGCAAAACAACTTTCTCGG 821
Query 954 AGCTATGATTCGGAATTCGGTGGGTTTGGATCTGCACCAAAGTTCCCGAGGCCTGTCGAG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 822 AGCTATGATTCGGAATTCGGTGGGTTTGGATCTGCACCAAAGTTCCCGAGGCCCGTCGAG 881
Query 1014 ATCCAGCTGATGCTTTATCATTACAAAAAGTTGAAGGAATCGGGGAAAACTAGTGAGGCT 1073
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 882 ATCCAGCTGATGCTTTATCATTTCAAAAAGTTGAAGGAATCGGGGAAAACTAGTGAGGCT 941
Query 1074 GATGAAGAGAAAAGTATGGTTTTATTCAGCTTGCAAGGCATGGCAAATGGAGGGATGCAT 1133
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GATGAAGACCAAAGTATGGTTTTATTCAGCTTGCAAGGCATGGCAAATGGAGGGATGCAT 1001
Query 1134 GATCACATTGGAGGCGGGTTTCATAGATACAGTGTCGATGAATGTTGGCATGTTCCACAT 1193
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1002 GATCACATTGGAGGCGGGTTTCATAGATACAGTGTCGATGAATGTTGGCACGTTCCACAT 1061
Query 1194 TTTGAGAAAATGCTGTATGATCAAGGGCAACTAGCTAATGTGTACCTCGACGGTTTTAGC 1253
|| ||||||||||||||||||||||||||||||||||| || ||||| || ||||||| |
Sbjct 1062 TTCGAGAAAATGCTGTATGATCAAGGGCAACTAGCTAACGTCTACCTGGATGGTTTTATC 1121
Query 1254 ATTACCAAGGACGTTATGTATTCTTATGTGGCAAGAGACATCCTTGATTATCTTAGAAGA 1313
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 ATAACCAAGGATGTTATGTATTCTTATGTGGCAAGAGACATCCTTGATTATCTTAGAAGA 1181
Query 1314 GACATGATTGCACCTGAAGGTGGAATATTCTCAGCTGAAGATGCCGATAGCTTTGAGTTC 1373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1182 GACATGATTGCACCTGAAGGTGGAATATTCTCAGCTGAAGATGCCGATAGCTTTGAATTC 1241
Query 1374 GAGGGGGCAAAGAGAAAGAAAGAAGGAGCTTTCTATATATGGA-CAAGCGATGAGATTGA 1432
|||||||||||||||||||| |||||||||||||||||||||| || ||| |||||||||
Sbjct 1242 GAGGGGGCAAAGAGAAAGAAGGAAGGAGCTTTCTATATATGGAGCA-GCGTTGAGATTGA 1300
Query 1433 TGAAGTCCTCGGGGAGAATGCTGATCTTTTCAAGGAGCATTATTATGTTAAGAAATCAGG 1492
||| || |||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1301 TGAGGTTCTCGGGGAGAATGCAGATATTTTCAAGGAGCATTATTATGTTAAGAAATCAGG 1360
Query 1493 TAACTGCGATCTTTCGAGCAGGAGTGACCCGCACAATGAATTTGCTGGGAAGAACGTGCT 1552
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1361 TAACTGTGATCTTTCGAGCAGGAGTGACCCGCACAATGAATTTGCTGGGAAAAACGTGCT 1420
Query 1553 GATCGAAAGAAATGAGAC-GTCTGCTATGGCATCAAAGTTTAGCCTCTCTGTTGAGAAGT 1611
|||||||||||||||| | |||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 1421 GATCGAAAGAAATGAG-CTGTCTGCCATGGCATCAAAATTTAGCCTCTCCGTTGAGAAGT 1479
Query 1612 ATCAGGAGATATTAGGTGAATGCCGAAGAAAGCTTTTCGATGTCAGATTGAAGCGACCTA 1671
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 ATCAGGAGATTTTGGGTGAATGCCGAAGAAAGCTTTTCGATGTCAGATTGAAGCGACCTA 1539
Query 1672 AGCCGCATCTAGATGATAAGATAATCGTGTCTTGGAACGGTCTTGTTATCTCGTCTTTCG 1731
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 AGCCACATCTAGATGATAAGATAATCGTGTCTTGGAACGGTCTTGTTATCTCGTCTTTCG 1599
Query 1732 CAAGAGCTTCCAAGATTCTTAAGGCTGAGCCTGAAAGCACCAAATATTATTTCCCTGTGG 1791
||||||||||||||||||| ||| |||||||||||||||||||||| | |||||||||||
Sbjct 1600 CAAGAGCTTCCAAGATTCTCAAGTCTGAGCCTGAAAGCACCAAATACTGTTTCCCTGTGG 1659
Query 1792 TGAATAGTCAGCCAGAGGATTACATAGAGGTTGCAGAGAAAGCAGCTTTGTTTATCAGAG 1851
||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||
Sbjct 1660 TGAATAGTCAGCCAGAGGAATACATAGAAGTTGCAGAGAAAGCAGCTCTGTTTATCAGAG 1719
Query 1852 GAAATCTCTATGATGAGCAGTCTCGCAGATTACAACACAGTTACAGACAGGGGCCATCCA 1911
| ||||| ||||||||||||||||| ||||||||||| ||||| |||||||| |||||||
Sbjct 1720 GGAATCTTTATGATGAGCAGTCTCGAAGATTACAACATAGTTATAGACAGGGACCATCCA 1779
Query 1912 AAGCTCCTGCCTTCTTAGACGATTATGCTTTCTTGATCTCTGGTTTACTCGATCTTTACG 1971
||||||||||||| |||||||||||||||||||||||| ||||||| || ||||| ||||
Sbjct 1780 AAGCTCCTGCCTTTTTAGACGATTATGCTTTCTTGATCGCTGGTTTGCTTGATCTCTACG 1839
Query 1972 AGAATGGAGGTGGGATCGAATGGCTTAAGTGGGCGATTAAACTTCAAGAAACACAGGATG 2031
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1840 AGAATGGAGGCGGGATCGAATGGCTTAAATGGGCGATTAAACTTCAAGAAACCCAGGATG 1899
Query 2032 AGTTATATCTGGACCGAGAAGGAGGAGCATACTTCAATACTGAAGGACAAGACCCATCGG 2091
|||||||||||||||||||||||||||| |||||||| || |||||||||||||| ||||
Sbjct 1900 AGTTATATCTGGACCGAGAAGGAGGAGCCTACTTCAACACCGAAGGACAAGACCCGTCGG 1959
Query 2092 TTCTTCTTCGTGTAAAAGAAGATCATGATGGTGCAGAACCTTCAGGGAACTCTGTTTCTG 2151
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960 TTCTTCTCCGTGTAAAAGAAGATCATGATGGTGCAGAACCTTCAGGGAACTCTGTTTCTG 2019
Query 2152 CTATCAATCTTGTGAGGTTAGCTTCCATAGTCGCCGGAGAAAAAGCTGAATCCTACCTCA 2211
|||| || |||||||| ||||||||||||||||| ||||||||||| || || ||||| |
Sbjct 2020 CTATTAACCTTGTGAGATTAGCTTCCATAGTCGCTGGAGAAAAAGCCGACTCGTACCT-A 2078
Query 2212 -ACACGGCACATCGTCTCCTGGCAGTCTTTGAGTTGAGGTTAAGAGAACTGGCGGTGGCT 2270
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2079 TACACAGCACATCGTCTCCTGGCAGTCTTTGAGTTGAGGTTAAGAGAAATGGCGGTGGCA 2138
Query 2271 GTGCCATTAATGTGCTGCTCCGCAGATATGATCTCTGTTCCGTCGAGGAAACAAGTTGTA 2330
|||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 2139 GTGCCATTAATGTGCTGCGCCGCAGACATGATATCTGTCCCGTCGAGGAAACAAGTTGTG 2198
Query 2331 TTGGTTGGTTCTAAGTCTTCCCCAGAGCTTACCAACATGCTTTCTGCAGCACATTCAGTC 2390
|| |||||||||| |||||| |||||||||| ||||||||||||||| ||||||||||||
Sbjct 2199 TTAGTTGGTTCTATGTCTTCTCCAGAGCTTAACAACATGCTTTCTGCTGCACATTCAGTC 2258
Query 2391 TATGATCCTAATAAAACGGTGATTCACATAGATCCCTCTAGTTCTGATGAAATCGAGTTT 2450
||||||||||||||||||||||||||||||||||| || | ||||||||| || ||||||
Sbjct 2259 TATGATCCTAATAAAACGGTGATTCACATAGATCCTTCGAATTCTGATGAGATGGAGTTT 2318
Query 2451 TGGGAAGAGCATAACAGTAATGTAGCTGAGATGGCTAAGAAGAACAGAAACTCAGAGAAA 2510
||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 2319 TGGGAAGAGTATAACAGTAATGTAGCTGAGATGGCGAAAAAGAACAGAAACTCAGAGAAA 2378
Query 2511 GTGGTGGCTCTTGTTTGTCAACACTTCACTTGCAGTCCTCCTGTCTTTGACTCTTCTTCT 2570
||||| |||||||| ||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 2379 GTGGTTGCTCTTGTGTGTCAACACTTCACTTGTAGTCCTCCTGTCGTTGACTCTTCTTCT 2438
Query 2571 CTCACTCGCTTGCTTTCCAAGTAAA--CAAAGATCATTCCATGTT 2613
||||||||||| || |||||||||| ||| || ||||||||||
Sbjct 2439 CTCACTCGCTTACTCTCCAAGTAAAAGCAA-GAG-ATTCCATGTT 2481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105052895710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5