BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G03260.1 Length=2843 Score E Sequences producing significant alignments: (Bits) Value Ahg490234 jgi|Araly1|490234|fgenesh2_kg.6__3368__AT4G03260.1 4063 0.0 > Ahg490234 jgi|Araly1|490234|fgenesh2_kg.6__3368__AT4G03260.1 Length=2750 Score = 4063 bits (2200), Expect = 0.0 Identities = 2553/2715 (94%), Gaps = 58/2715 (2%) Strand=Plus/Plus Query 131 TTTTCAAAT-CCAATCCTTTTCCTCCCTGGTGACCAAGTAATTGGGGATTAACAAAGGGA 189 ||||||||| |||||| ||||||| || |||||||||||||||||||| ||| ||| ||| Sbjct 73 TTTTCAAATCCCAATCATTTTCCT-CCAGGTGACCAAGTAATTGGGGAATAA-AAAAGGA 130 Query 190 CTGGGGCTTTATTAAGCTCGAAACAATTGTTCTTCACTCTGGCCGCTTCTGCAAAGTCGT 249 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 131 C-AGGGCTTTATTAAGCTCGAAACAATTGTTCTTCACTCTGGCCGCTTCTGCAAAGTCGT 189 Query 250 GTGCTTCTCGCACCTCTGCGCAGGTGTGGGGTGGCCTTGAAGTGGTGACTTCACTCTGTC 309 |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| || Sbjct 190 GTGCTTCTCGCACCTCGGCGCAGGTGTGGGGTGGCCTTGAAGTGCTGACTTCACTCTCTC 249 Query 310 TTCCAAGGATTTCTCTAGCTTCTATCATTTGGAGGCTCCGTCGTGTTTCTGAGGGTCTTA 369 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 250 TTCCAAGGATTTCTCTAGCTTCCATCATTTGGAGGCTCCGTCGTGTTTCTGAGGGTCTTA 309 Query 370 CCCTTGATTACGGCTAACATTTACTACGCCCACTATACCACCTC-T-TAA-GCTTTTATA 426 |||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||| Sbjct 310 CCCTTGATTACGGCTAACATTTACTACGCCCACTATACCACCACCTCTAAAGCTTTTATA 369 Query 427 AGAACTTTTTATTCGTGCAAAAACTTAACTTGGATCTTAATTGTTTCTAGTTTAGTTGTG 486 | |||| | |||||||||| |||| || ||||||||||| ||||||||||||| ||||| Sbjct 370 ACAACTCTCTATTCGTGCACAAACGTAGCTTGGATCTTAGTTGTTTCTAGTTTTTTTGTG 429 Query 487 GTTGTAAAGTAAAGAACCGtttttttgtggtttggttttgcttttttagtttCCGTTGGT 546 ||| | | | |||| | || ||| |||| ||||| | || | Sbjct 430 GTT-T---G----G-----TTTTGCT-TG-TTTAGTTTC-CTTTT---G-----GT-G-- 462 Query 547 GATGTAGTTCGATGTTATTAAGTTTGACACAATGGTCAGGTTTTCATGCTTCAACGCTCA 606 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 463 -ATGTAGTTCCCTGTTTTTAAGTTTGACACAATGGTCAGGTTTTCATGCTTCAACGCTCA 521 Query 607 CATCCACCGCCATAGACCTAAGAAATCTGTTGAAGGATTTTCAGAACGAGTGATCAAAGA 666 |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 522 CATCCACCGCCATAAACCTAAGAAATCTGTTGAAGGACTTTCAGAACGAGTGATCAAAGA 581 Query 667 AGATGGGTCTAAATCAAAAGGATTGAGCTCAATTATATTTGGGAGAAACATTGCTTCTGT 726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 582 AGATGGGTCTAAATCAAAAGGATTGAGCTCAATTATATTTGGGAGAAACATTGCTTCTGT 641 Query 727 TAGTGAAAACAGCAAGCCA---G-C-C-GCTG-T-T-GAGCGTGTCTGGAAATCTGAGGA 777 |||||||||||||| |||| | | | || | | | ||||| ||||||||||||||||| Sbjct 642 TAGTGAAAACAGCAGGCCAACTGGCTCTGCCGCTATTGAGCGGGTCTGGAAATCTGAGGA 701 Query 778 AATTAAGCCCAGTGGCATTCTTGAGCATGGTATTGGGACGCACCAGGTACTGCATCTCAA 837 ||||||||||||||| ||||||||||||| ||||| ||||| ||||||| ||||||||| Sbjct 702 AATTAAGCCCAGTGGTATTCTTGAGCATGATATTGACACGCATCAGGTACGGCATCTCAA 761 Query 838 GAAAAGTCAATCTCATGGAAATGAACTATACTTGGATGGGCGGGATGCCACAGAGAATGG 897 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 762 GAAAAGTCAGTCTCATGGAAATGAACTATACTTGGATGGGCGGGATGCCACAGAGAATGG 821 Query 898 AACAGACGATGCATCAGATCGGATTACTTCTCCGAATTCTCTTGAACAACAGAGTGGTAT 957 ||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 822 AACAGACGATGGATCAGATCCGATTACTTCTCCAAATTCTCTTGAACAACAGAGTGGTAC 881 Query 958 TCACGAGGCAGGCAGCAGCAAGCGTGTAGATGAAAGTCCTAATCTGTATCAGCAAGGTCC 1017 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| Sbjct 882 TCACGAGGCAGGCAGCAGCAAGCATGTAGATGGAAGTCCTAATCTGTATCAGCAAGCTCC 941 Query 1018 TCGAGCTTCTGTTTCTGCTTACCAGGGTTCAAATCAAGCACTCTGTGGGTCTATTTTCTC 1077 ||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 942 TCGAGCTACAGTTTCTGCTTACCAGGGTTCAAATCAGGCACTCTGTGGGTCTATTTTCTC 1001 Query 1078 GGTTGGAGATCTTCATCATACTGATAAAGACAGCCGTCAACTCGATGATACCTCCTTATA 1137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1002 GGTTGGAGATCTTCATCATACTGATAAAGACAGCCGTCAACTCGATGATACCTCCTTATA 1061 Query 1138 TGGTGAACAGATGGACAACTCAAACAGTCAAACACCTCATGATTCACCTTTGATGGTGAG 1197 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1062 TGGTGAACAGATGGACAACTCAAACAGCCAAACACCTCATGATTCACCTTTGATGGTGAG 1121 Query 1198 GTCGAATTCATTGCCTAATATTGCTGACTCTTCATCAGAGAAGTCTTCACCTTTCAAATA 1257 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1122 GTCGAATTCAATGCCTAATATTGCTGACTCTTCATCAGAGAAGTCTTCACCTTTCAAATA 1181 Query 1258 TTCTTCTCACCACTCTAGATCCTCTGATGACCTTCATGCCCTCGACACT-CGCCAAACAG 1316 ||||||||||||||||||||||||||||||||||| ||| ||| ||| | |||||||||| Sbjct 1182 TTCTTCTCACCACTCTAGATCCTCTGATGACCTTCGTGCTCTCTACA-TGCGCCAAACAG 1240 Query 1317 ATAAATCTGTCCATGAGACTGATGAAGAGGTGAAGCAAGAGGAAGATCAAGATCGGGACT 1376 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1241 ATAAATCTGTCCATGAGACTGATGAAGAGGTGAAGCAAGAGCAAGATCAAGATCGGGACT 1300 Query 1377 ATGATATGCATAATTCTGGAGATAACAACAAGGAAAATCTCGTGGAGGATGGATATGATG 1436 |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1301 ATGATACGCATAATTCTGGAGATAACAACCAGGAAAATCTCGTGGAGGATGGATATGATG 1360 Query 1437 ATTCATATGATTATTCTTCTTTGGCAAAAGATTGGATCGTACCACCAACAGATGAGCTTA 1496 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1361 ATGCATATGATTATTCTTCTTTGGCAAAAGATTGGATCGTACCACCAACAGATGAGTTTA 1420 Query 1497 AATTATCAAAGTTCCTTGAAGGAGAAACAACAAACCAGCAAGCAGAATTTTCGGGAAAGG 1556 ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 1421 AATTAACAAAGTTCCTTGAAGGAGAAACATCAAACCAGCAAGCAGAATTTCCGGGAAAGG 1480 Query 1557 ATTCTAAATTCAAGCGTATCGAAGATTGGGTCAATGACCTTCAGCATGTAAACTTGTCTG 1616 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1481 ATTCTAAATTCAAGCGTATCGAGGATTGGGTCAATGACCTTCAGCATGTAAACTTGTCTG 1540 Query 1617 AGGAAGCTGATGAAATAACAGGGTACGATGATGAGTTGCCAAGAGAACCCGTCGTGTTGA 1676 |||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 1541 AGGAAGCTGATGAAATAACAGGGTACGACGATGAGTTGCCAAGAGAACCTGTCATGTTGA 1600 Query 1677 ATGAGCAAGCAACATCTTCTGCTAAAGTAGATGCCATCAAGTTAACTCCTGGAATGGAAG 1736 |||||| || |||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1601 ATGAGCCAGTAACAGCTTCTGCTAAAGTGGATGCCATCAAGTTAACTCCTGGAATGGAAG 1660 Query 1737 CTGCGAAAAAGTATATATCCTCTCTAAGTGCTTCTGCAACCACAGCCCAGCTGGTTAGTC 1796 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1661 CTGCGAAAAAGTATATATCCTCTCTAAGTGCTTCTGCAACCACAGCCCAACTGGTTAGTC 1720 Query 1797 ATGGTCTGGTTGTGATACCATTCCTCAGTGCATTTGTTGGTCTGAGAGTTCTCAATCTCT 1856 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1721 ATGGTCTGGTTGTGATACCATTCCTCAGTGCATTTGTTGGTCTGAGAGTTCTCAATCTCT 1780 Query 1857 CAGGAAATGCTATAGTTAGAATAACCGCTGGTGCTCTTCCTCGAGGTTTACATGCATTGA 1916 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1781 CAGGAAATGCTATAGTTAGAATAACCGCTGGTGCTCTTCCTCGAGGACTACATGCATTGA 1840 Query 1917 ATTTGTCGAAGAACAGTATCTCGGTGATTGAGGGCCTACGTGAACTCACTCGGCTTCGAG 1976 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1841 ATTTGTCGAAGAACAGCATCTCGGTGATTGAGGGCCTACGTGAACTCACTCGGCTTCGAG 1900 Query 1977 TATTAGATTTGAGTTACAACCGAATACTGAGACTTGGTCATGGTCTGGCTTCGTGCTCCT 2036 | |||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| Sbjct 1901 TTTTAGATTTGAGTTACAACCGAATACTTAGACTTGGTCATGGTCTGGCATCTTGCTCCT 1960 Query 2037 CTCTGAAAGAACTATACCTAGCTGGGAACAAAATCAGCGAAATCGAGGGTCTTCATCGAC 2096 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1961 CTCTGAAAGAACTATACCTAGCTGGGAACAAAATCAGCGAAATCGAGGGTCTTCATCGTC 2020 Query 2097 TTTTGAAATTGACGGTCCTGGATTTACGCTTCAATAAGTTTTCAACCACCAAATGTCTTG 2156 | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2021 TCTTGAAATTGACGGTCTTGGATTTACGCTTCAATAAGTTTTCAACCACCAAATGTCTTG 2080 Query 2157 GCCAGCTCGCTGCAAATTACAGTTCTCTTCAGGCTATAAGCTTGGAAGGTAACCCTGCAC 2216 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2081 GCCAGCTCGCTGCAAATTACAGTTCTCTTCAGGCTATAAGCTTGGAAGGTAACCCTGCAC 2140 Query 2217 AGAAGAATGTTGGTGATGAACAACTGAGAAAGTACCTTTTGGGACTTCTGCCAAATTTGG 2276 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2141 AGAAGAATGTTGGTGATGAACAACTGAGAAAGTACCTTTTGGGACTTCTTCCAAATTTGG 2200 Query 2277 TATACTATAATAGACAAGGCACTAAAGATGCTCGGCTCGG-GACAAGCACACATCAGTTG 2335 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 2201 TATACTATAATAGACAAGGCACTAAAGATGCTCGGCTCGGAG-CAAGCACACATCAGTTG 2259 Query 2336 GACCGAGGCCTTAGATCAGAGCTCAAAAACAGTAGCCGGAAGAGTAGCCATGGTGCATCC 2395 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 2260 GACCGAGGCCTTAGATCAGAGCTCAAAAACAGTTGCTGGAAGAGTAGCCATGGTGCATCC 2319 Query 2396 AGTTCTCACAAACCTGGATCCTCCACAGCTCGTAAAGCACCAGCATTGCAGAAACGGTCC 2455 |||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 2320 AGTTCTCACAAACCCGGATCCTCCGCAGCTCGTAAAGCACCAGCTTTGCAGAAACGGTCT 2379 Query 2456 AAGGAGAGACGCAGCCGTCTTCCACCTGTGGGACACAAACTATCTCCAGCTGCTTACGAG 2515 ||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||| Sbjct 2380 AAGGAGAGAAGCAGCCGTCTTCCACCTGTGGGACACAAAATATCTACAGCTGCTGACGAG 2439 Query 2516 AATTATCACGTTGCTACTGGTGATAGATTGTCTAGTCTGAGAACTGAGCTCTCCATGCGA 2575 ||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct 2440 AATTATCACGTTGCTACTGCTGATAGATTGTCTAGTCTGAGATCTGAGCTCTCTATGCGT 2499 Query 2576 AGAAGTCGAAGTGAAGGAACTCTCGGACCTATCTGAtctctctctctcCCTCTTTCATTG 2635 | |||||||||||||||||||||||||||||||||||||||||||| || | || ||||| Sbjct 2500 ATAAGTCGAAGTGAAGGAACTCTCGGACCTATCTGATCTCTCTCTC-CC-T-TT-CATTG 2555 Query 2636 CCTGCGATTTCCTTAGCGAGGTAACGATGAAGATGTGATAGATACACA--CTTTCTTCCC 2693 ||| ||||||||| ||||||||||||||||||||||||||||| | | |||||||||| Sbjct 2556 GCTGTGATTTCCTTTGCGAGGTAACGATGAAGATGTGATAGATATATATACTTTCTTCCC 2615 Query 2694 TTTATTCATCTTCTTCATCTTTGTGTTTT-GTTGTTGTGCATTAC-AT--ACATCAGAAG 2749 ||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||| Sbjct 2616 TTTATTCATCTTCTTCATCTTTGTGTTTTTGTTGTTGTGCATTACCATTTACATCAGAAG 2675 Query 2750 CTTTGATTCTTATAGCTTCTCAATAATGTCTGAAATTGGAAACCATGGTATACATTCTTT 2809 ||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 2676 CTTTGATTCTTTTAGCTTCTCAATAATGTCTGAAATTTGAAACCATGATATACATTCTTT 2735 Query 2810 TCAGCACAGTCTGAG 2824 ||||||||||||||| Sbjct 2736 TCAGCACAGTCTGAG 2750 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 107300220165 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5