BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03400.1
Length=2051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943375 jgi|Araly1|943375|scaffold_603919.1 2909 0.0
> Ahg943375 jgi|Araly1|943375|scaffold_603919.1
Length=1817
Score = 2909 bits (1575), Expect = 0.0
Identities = 1736/1816 (96%), Gaps = 1/1816 (0%)
Strand=Plus/Plus
Query 117 CTTGAAAGACTTGGTATTGGATGGAAACTGTAGAAGCGGGGCATGATGATGTTATTGGTT 176
||| |||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3 CTTAAAAGGCTT-GTATTGGATGGAAACTGTAGAAGCTGGGCATGATGATGTTATTGGTT 61
Query 177 GGTTCGAGCATGTGTCGGAAAATGCCTGCAAGGTCCAAAGCGAGACGCTACGAAGGATTC 236
|||| |||||||| ||||| |||||||||||||||||||||||||| || || ||||||
Sbjct 62 GGTTTGAGCATGTATCGGAGAATGCCTGCAAGGTCCAAAGCGAGACTCTGCGCCGGATTC 121
Query 237 TTGAGCTCAACTCCGGAGTGGAGTATCTGAGGAAATGGCTTGGGACTGTTGATGTAGAAA 296
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 122 TTGGGCTCAACTCCGGAGTGGAGTATCTGAGGAAGTGGCTTGGGACTGTTGATGTAGAAA 181
Query 297 AGATGGACGATTATACTTTGGAAACTCTCTTTACTTCCTTGGTGCCTATTGTTTCACATG 356
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 AGATGGACGATTATACCTTGGAAACTCTCTTTACTTCCTTGGTGCCTATTGTTTCACATG 241
Query 357 CTGATTTAGATCCTTATATTCAAAGAATTGCAGATGGAGAGACTTCTCCATTACTTACAC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 242 CTGATTTAGATCCTTATATTCAAAGAATTGCAGATGGAGAGACTTCTCCATTACTCACAC 301
Query 417 AAGAACCCATCACTGTTCTGTCCCTCAGCTCTGGAACAACAGAAGGGAGACAAAAGTATG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 AAGAACCCATCACTGTTCTGTCCCTCAGCTCTGGAACAACAGAAGGGAGACAAAAGTATG 361
Query 477 TTCCGTTTACTCGCCATAGCGCGCAAACTACTCTTCAGATTTTCCGATTATCAGCGGCTT 536
|||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 362 TTCCATTTACTCGTCATAGCGCACAAACTACTCTTCAGATTTTTCGATTATCAGCGGCTT 421
Query 537 ACAGATCAAGGTTTTATCCAATAAGGGAAGGAGGGAGGATTCTTGAGTTTATATACGCCG 596
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 422 ACAGATCAAGGTATTATCCAATAAGGGAAGGAGGGAGGATTCTTGAGTTTATCTACGCCG 481
Query 597 GGAAGGAATTTAAGACGCTAGGAGGATTGACAGTAGGAACGGCCACAACACATTACTATG 656
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 482 GGAAAGAATTTAAGACGCTAGGAGGCTTGACAGTAGGAACGGCCACAACACATTACTATG 541
Query 657 CGAGCGAAGAGTTTAAAACTAAGCAAGAGACAACAAAATCCTTCACTTGTAGCCCACAAG 716
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 542 CGAGCGAAGAGTTTAAAACTAAGCAAGAGACAACAAAGTCCTTCACTTGTAGCCCACAAG 601
Query 717 AGGTCATCTCAGGAGGTGATTTCGGTCAGTGCACGTATTGTCATCTCCTACTTGGTCTCC 776
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 602 AGGTCATCTCAGGAGGTGATTTCGGGCAGTGCACGTATTGTCATCTCCTACTTGGCCTCC 661
Query 777 ATTACTCCAGCCAAGTAGAGTTTGTCGCCTCTGCTTTTTCTTACACCATTGTCCAAGCTT 836
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 662 ATTACTCCAGCCAAGTAGAGTTCGTCGCCTCTGCTTTTTCTTACACTATTGTCCAAGCTT 721
Query 837 TCTCCTTTTTCGAAGAAATCTGGAGAGAGATATGTGCTGACATCAAGGAAGGTAATCTTA 896
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 722 TCTCCTTTTTCGAAGAAATCTGGAGAGAGATATGTGCTGACATCAAGGAAGGCAATATTA 781
Query 897 GCTCAAGAATCACTCTGCCCAAGATGAGAAAAGCTGTATTGGCTCTGATCAGACCAAACC 956
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 782 GCTCAAGAATCACTCTGCCCAAGATGAGAAAAGCTGTATTGACTCTGATCAGACCAAACC 841
Query 957 CGTCTCTTGCTTCTCATATCGAGGAGATCTGCTTAGAGCTGGAAACAAATCTCGGATGGT 1016
||||||||||||||||||| || ||| ||||| |||||||||| |||||||||||||||
Sbjct 842 CGTCTCTTGCTTCTCATATTGAAGAGGTCTGCACAGAGCTGGAATCAAATCTCGGATGGT 901
Query 1017 TCGGTTTGATTTCAAAGCTTTGGCCAAATGCAAAATTTATCTCCTCAATCATGACGGGTT 1076
| || |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 902 TAGGGTTGATTCCAAAGCTTTGGCCAAATGCAAAATTTATCTCCTCAATCATGACAGGTT 961
Query 1077 CTATGCTGCCGTACCTGAATAAGCTGAGGCATTACGCTGGCGGTTTGCCCCTGGTGAGCG 1136
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 962 CCATGCTGCCGTACCTTAATAAGCTGAGGCATTACGCTGGCGGTTTGCCTCTGGTGAGCG 1021
Query 1137 CAGATTACGGGTCAACCGAGAGCTGGATTGGTGTGAACGTTGATCCTCATCTTCCCCCAG 1196
||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1022 CAGATTATGGGTCAACCGAGAGCTGGATCGGTGTGAACGTTGATCCTAATCTTCCCCCAG 1081
Query 1197 AAGACGTGAGCTTTGCTGTGATTCCCACTTTTAGTTACTTCGAGTTTATACCACTTTACA 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 AAGACGTGAGCTTTGCTGTGATTCCCACTTTTAGTTACTTCGAGTTTATACCACTTTACA 1141
Query 1257 GGCGGCAGAATCAATCAGACATATGCATTGACGGTGACTTTGTCGAAGATAAACCTGTGC 1316
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1142 GGCGGCAGAATCAATCAGACATATGCAGTGACGGTGACTTTGTCGAAGAGAAACCTGTGC 1201
Query 1317 CGCTCTCTCAAGTCAAACTCGGGCAGGAGTATGAACTTGTTCTAACCACTTTCACAGGTC 1376
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1202 CGCTCTCTCAAGTCAAACTCGGACAGGAGTATGAACTTGTTCTAACCACTTTCACAGGTC 1261
Query 1377 TTTATAGGTACAGATTAGGAGACGTAGTTGAAGTGACCAGTTTTCACAAAGGCACACCGA 1436
||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |
Sbjct 1262 TTTATAGGTACAGATTAGGAGACGTTGTTGAAGTAACCGGTTTTCACAAAGGCACACCAA 1321
Query 1437 AGCTAAGTTTCATATACAGAAGAAAACTCATCTTAACCATCAACATTGACAAAAACACAG 1496
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1322 AGCTAAGTTTCATATACAGAAGAAAACTCATCTTAACCATCAACATTGACAAGAACACAG 1381
Query 1497 AGAAGGATCTTCAGAGAGTTGTTGACAAGGCGTCTCAGCTTCTGAGCCGATCCACACGAG 1556
||||||||||||||||||| ||||| |||||||||||||| ||||||| | |||| ||||
Sbjct 1382 AGAAGGATCTTCAGAGAGTGGTTGATAAGGCGTCTCAGCTGCTGAGCCAAACCACGCGAG 1441
Query 1557 CTGAAGTCGTTGACTTTACAAGCCACGCAGACGTTATAGCTCGTCCTGGTCACTATGTAA 1616
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 CCGAAGTCGTTGACTTTACAAGCCACGCAGACGTTATAGCTCGTCCTGGTCACTATGTAA 1501
Query 1617 TCTACTGGGAAATCAGAGGAGAAGCAGATGATAAGGCTCTTGAAGAATGTTGCAGAGAGA 1676
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1502 TCTACTGGGAAATCAGAGGAGAAGCAGAGGATAAGGCCCTTGAAGAATGTTGCAGAGAGA 1561
Query 1677 TGGATACTGCTTTTGTGGACTATGGTTATGTAGTGTCGAGGCGCATGAACTCGATCGGAC 1736
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1562 TGGATACAGCTTTTGTGGACTATGGTTATGTTGTGTCGAGGCGCATGAACTCGATCGGAC 1621
Query 1737 CGCTTGAGCTACGAGTTGTGGAACGAGGAACGTTTGGGAAAGTGGCGGAAAGGTGCGTTG 1796
|||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1622 CGCTCGAGCTGCGAGTAGTGGAACGAGGTACGTTTGGGAAAGTGGCGGAAAGGTGCGTTG 1681
Query 1797 GGAAATGCGGTGGCTTGAACCAGTTTAAGACTCCTAGGTGTACGACCAATTCTGTTATGC 1856
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1682 GGAAATGCGGTTGCTTGAACCAGTTTAAGACTCCTAGGTGTACGACCAATTCGGTTATGC 1741
Query 1857 TTGACATACTTAATGATTCTACTATCAAGAGATTTCGCAGTTCAGCTTATGACTAGAAAC 1916
|| |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1742 TTAACATACTTGATGATTCTACTATCAAGAGATTTCGCAGTTCGGCTTATGTCTAGAAGT 1801
Query 1917 CTGATTACTAAATTTA 1932
|||||| || ||||||
Sbjct 1802 CTGATTTCTGAATTTA 1817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77132746125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5