BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G03420.1

Length=1756
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg943368 jgi|Araly1|943368|scaffold_603912.1                       1580    0.0  
  Ahg470333 jgi|Araly1|470333|fgenesh2_kg.1__287__AT1G03610.1          837    0.0  


> Ahg943368 jgi|Araly1|943368|scaffold_603912.1
Length=985

 Score = 1580 bits (855),  Expect = 0.0
 Identities = 907/933 (97%), Gaps = 0/933 (0%)
 Strand=Plus/Plus

Query  406   TCAAACCTTGACAGATTCCTTCATTGCACAACACCTGTAGTGCCACCCCAATCTCTATCC  465
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct  51    TCAAACCTTGACAGATTCCTTCATTGCACAACACCTGTAGTGCCACCCCAATCTCTCCCC  110

Query  466   AAGGCGGAGATTAGGAGTTTGAATAGGATTTGGCATCCATGGGAGAGACAAAAGGTTGAG  525
             |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct  111   AAGGCGGAGATTAGGAGTTTGAATCGGATTTGGCATCCATGGGAGAGAGAAAAGGTTGAG  170

Query  526   TTTTTCAGATTGAGTGATCTATGGGATTGTTATGATGAATGGAGTGCTTATGGAGCTGGT  585
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  171   TTTTTCAGATTGAGTGATCTATGGGATTGTTACGATGAATGGAGTGCTTATGGAGCTGGT  230

Query  586   GTTCCAATTCGTCTCTCTAATGGAGAATCTCTTGTTCAATATTATGTTCCCTATCTCTCT  645
             ||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct  231   GTTCCTATTCGTCTCACTAATGGAGAATCTCTTGTTCAATATTATGTTCCTTATCTCTCT  290

Query  646   GCTATTCAGATTTTCACCTCTCGTTCTTCCTTGATCCGCTTAAGGGATGATTCTGAAGAT  705
             ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct  291   GCTATTCAGATTTTCACCTCTCGTTCTTCCTTGATCCGCTTTAGGGATGACTCTGAAGAT  350

Query  706   GGGGAAAGCAGAGATTCGTTTAGTGATTCATATAGTGATGAGAGTGAAAGTGATAAACTT  765
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  351   GGGGAAAGCAGAGATTCCTTTAGTGATTCATATAGTGATGAGAGTGAAAGTGATAAACTT  410

Query  766   TCGAGATGTGCTTCTGATGAAGGACTTGAACATGACGCTCTCTTGCATCCTAATGATCGG  825
             ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| 
Sbjct  411   TCGAGATGTGCTTCTGAGGAAGGACTTGAACATGACGCTCTCTTGCATCCGAATGATCGC  470

Query  826   TTGGGATATCTTTATCTGCAATACTTTGAGAGATCAGCTCCTTATGCTCGAGTTCCTCTC  885
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  471   TTGGGATATCTTTATCTGCAATACTTTGAGAGATCAGCTCCTTATGCTCGAGTTCCTCTC  530

Query  886   ATGGATAAGATCAATGAATTGGCTCAAAGGTACCCGGGACTAATGTCGTTGCGAAGCGTA  945
             ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct  531   ATGGATAAGATCAATGAATTGGCTCAAAGGTACCCTGGATTAATGTCGTTGAGAAGCGTA  590

Query  946   GATCTTTCCCCGGCAAGTTGGATGGCGGTAGCGTGGTACCCTATTTACCATATTCCAATG  1005
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  591   GATCTTTCCCCGGCAAGTTGGATGGCGGTAGCGTGGTACCCAATTTACCATATTCCAATG  650

Query  1006  GGAAGGACCATCAAAGATTTGTCCACTTGTTTCCTCACTTATCACACTCTTTCATCTTCT  1065
             ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct  651   GGAAGGACCATCAAAGATTTGTCCACTTGTTTCCTTAGTTATCACACTCTTTCATCTTCT  710

Query  1066  TTCCAAGATATGGAGCCAGAAGAAAATGGCGGGGAAAAGGAGAGGATCCGGAAGGAAGGA  1125
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  711   TTCCAAGATATGGAGCCAGAAGAAAATGGCGGGGAAAAGGAGAGGATCCGGAAGGAAGGA  770

Query  1126  GAAGGTGTAACTTTGCTTCCTTTTGGGTTAGCCACTTATAAGATGCAAGGCAATGTTTGG  1185
             |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct  771   GAAGGTGTAACTTTGCTTCCTTTTGGATTAGCCACTTACAAGATGCAAGGCAATGTTTGG  830

Query  1186  CTCTCGGAAGACGATCAAGGTCAAGATCAAGAGCGAGTTCTTTCGCTTCTAAGTGTTGCG  1245
             |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct  831   CTCTCGGAAGACGATCAAGGTCAAGATCAAGAGCGAGTACTGTCGCTTCTAAGTGTTGCG  890

Query  1246  GATTCTTGGCTAAAACAGCTAAGAGTCCAACACCATGACTTCAACTACTTCTCAAGAATG  1305
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  891   GATTCTTGGCTAAAACAGCTAAGAGTCCAACACCATGACTTCAACTACTTCTCAAGAATG  950

Query  1306  GCTCACCGTGGCTGAAACAAATCCGTTGCTATA  1338
             ||||||||||||| |||||||||||| ||||||
Sbjct  951   GCTCACCGTGGCTAAAACAAATCCGTCGCTATA  983


> Ahg470333 jgi|Araly1|470333|fgenesh2_kg.1__287__AT1G03610.1
Length=1605

 Score =  837 bits (453),  Expect = 0.0
 Identities = 779/929 (84%), Gaps = 52/929 (6%)
 Strand=Plus/Plus

Query  412   CTTGA-CAGATTCCTTCATTGCACAACA-CCTGTAGTGCCACCCCAATCTCTATCCAAGG  469
             ||||| | ||||||||||||||| |||| ||| |||||||||||||||||||  ||||||
Sbjct  392   CTTGATC-GATTCCTTCATTGCATAACACCCT-TAGTGCCACCCCAATCTCTCCCCAAGG  449

Query  470   CGGAGATTAGGAGTTTGAATAGGATT-TGGCATCCATGGGAGAGACAAAAGGTTGAGTTT  528
             |||||||||| |   | |||  |||| |||||||||||||||||| ||||||||||||||
Sbjct  450   CGGAGATTAGAACCCTAAAT-CGATTGTGGCATCCATGGGAGAGAGAAAAGGTTGAGTTT  508

Query  529   TTCAGATTGAGTGATCTATGGGATTGTTATGATGAATGGAGTGCTTATGGAGCTGGTGTT  588
             ||||| ||||||||| | ||||||||||||||||||||||| |||||||||||| | || 
Sbjct  509   TTCAGGTTGAGTGATTTGTGGGATTGTTATGATGAATGGAGCGCTTATGGAGCTAGCGTC  568

Query  589   CCAATTCGTCTCT-CTAATGGAGAATCTCTTGTTCAATATTATGTTCCCTATCTCTCTGC  647
             || |||| | | | | ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct  569   CCTATTCATAT-TACCAATGGAGAATCTCTTGTTCAATACTATGTTCCTTATCTCTCTGC  627

Query  648   TATTCAGATTTTCACCTCTCGTTCTTCCTTGATCCGCTTAAGGGATGATTCTGAAGATGG  707
              || |||||||||||||||| ||| ||||||||||| |||||||| || |||||||||||
Sbjct  628   CATCCAGATTTTCACCTCTCATTCCTCCTTGATCCGATTAAGGGAAGAGTCTGAAGATGG  687

Query  708   GGAAAGCAGAGATTCGTTTAGTGATTCATATAGTGA-TGAGAGTGAAAGTGATAAACTTT  766
             |||| |  |||    |  ||| ||| | | ||| || | || ||   || |||  |    
Sbjct  688   GGAATG-TGAG----G-GTAGAGATCCGTTTAGCGATTCAG-GT---AGCGAT-GA----  732

Query  767   CGAGATGTGCTTCTGATGAAGGACTT--GAACATGACGCTCTCTTGCATCCTAATGATCG  824
              ||| ||| | ||||| |||||||||  |||||  || | ||||||||||| ||||||||
Sbjct  733   -GAG-TGT-C-TCTGAGGAAGGACTTGAGAACA--ACACGCTCTTGCATCCAAATGATCG  786

Query  825   GTTGGGATATCTTTATCTGCAATACTTTGAGAGATCAGCTCCTTATGCTC-GAGTTCCTC  883
              ||||| ||||||||||| ||||||||||||||||||||||||||| | | |||||||||
Sbjct  787   TTTGGGTTATCTTTATCTCCAATACTTTGAGAGATCAGCTCCTTATAC-CAGAGTTCCTC  845

Query  884   TCATGGATAAGATCAATGAATTGGCTCAAAGGTACCCGGGACTAATGTCGTTGCGAAGCG  943
             | ||||||||||||||||||||||||||||| ||||||||| | ||||||||| ||||||
Sbjct  846   TGATGGATAAGATCAATGAATTGGCTCAAAGATACCCGGGATTGATGTCGTTGAGAAGCG  905

Query  944   TAGATCTTTCCCCGGCAAGTTGGATGGCGGTAGCGTGGTACCCTATTTACCATATTCCAA  1003
             | |||||||| || |||||||||||| | |||||||||||||| ||||||||||| ||||
Sbjct  906   TTGATCTTTCTCCAGCAAGTTGGATGTCAGTAGCGTGGTACCCGATTTACCATATACCAA  965

Query  1004  TGGGAAGGACCATCAAAGATTTGTCCACTTGTTTCCTCACTTATCACACTCTTTCATCTT  1063
             ||||||| ||||| ||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct  966   TGGGAAGAACCATTAAAGACTTATCCACTTGTTTCCTCACTTATCACACTCTTTCCTCTT  1025

Query  1064  CTTTCCAAGATATGGAGCCAGAAGAAAATGGCGGGGAAAAGGAGAGGATCCGGAAGGAAG  1123
             |||||||||||||||| |||||||||||||| ||||| ||||||||| | |||| |||||
Sbjct  1026  CTTTCCAAGATATGGAACCAGAAGAAAATGGTGGGGACAAGGAGAGGGTGCGGAGGGAAG  1085

Query  1124  GAGAAGGTGTAACTTTGCTTCCTTTTGGGTTAGCCACTTATAAGATGCAAGGCAATGTTT  1183
             | |||| | ||||| |||| || || ||| | || ||||| |||||||||||  ||||||
Sbjct  1086  GGGAAGATATAACTCTGCTCCCATTCGGGATGGCTACTTACAAGATGCAAGGTGATGTTT  1145

Query  1184  GGCTCTCGGAAGACGATCAAGGTCAAGATCAAGAGCGAGTT--CTTTCGCTTCTA-AGTG  1240
             |||| ||| | ||| | | |  |   ||||||||| || ||  ||| ||||| || ||||
Sbjct  1146  GGCTTTCGCAGGACCA-CGA--T---GATCAAGAGAGA-TTGGCTT-CGCTT-TATAGTG  1196

Query  1241  TTGCGGATTCTTGGCTAAAACAGCTAAGAGTCCAACACCATGACTTCAACTACTTCT-CA  1299
             | ||||||||||||||||||||||| || |||||||| ||||||||||||||||||| ||
Sbjct  1197  TCGCGGATTCTTGGCTAAAACAGCTTAGGGTCCAACATCATGACTTCAACTACTTCTGCA  1256

Query  1300  --A-G--AATGGCTCACCGTGGCTGAAAC  1323
               | |  |||| |||| ||||||| ||||
Sbjct  1257  GTATGTCAATGACTCATCGTGGCTAAAAC  1285



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 65896123850


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5