BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G03420.1 Length=1756 Score E Sequences producing significant alignments: (Bits) Value Ahg943368 jgi|Araly1|943368|scaffold_603912.1 1580 0.0 Ahg470333 jgi|Araly1|470333|fgenesh2_kg.1__287__AT1G03610.1 837 0.0 > Ahg943368 jgi|Araly1|943368|scaffold_603912.1 Length=985 Score = 1580 bits (855), Expect = 0.0 Identities = 907/933 (97%), Gaps = 0/933 (0%) Strand=Plus/Plus Query 406 TCAAACCTTGACAGATTCCTTCATTGCACAACACCTGTAGTGCCACCCCAATCTCTATCC 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 51 TCAAACCTTGACAGATTCCTTCATTGCACAACACCTGTAGTGCCACCCCAATCTCTCCCC 110 Query 466 AAGGCGGAGATTAGGAGTTTGAATAGGATTTGGCATCCATGGGAGAGACAAAAGGTTGAG 525 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 111 AAGGCGGAGATTAGGAGTTTGAATCGGATTTGGCATCCATGGGAGAGAGAAAAGGTTGAG 170 Query 526 TTTTTCAGATTGAGTGATCTATGGGATTGTTATGATGAATGGAGTGCTTATGGAGCTGGT 585 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 171 TTTTTCAGATTGAGTGATCTATGGGATTGTTACGATGAATGGAGTGCTTATGGAGCTGGT 230 Query 586 GTTCCAATTCGTCTCTCTAATGGAGAATCTCTTGTTCAATATTATGTTCCCTATCTCTCT 645 ||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 231 GTTCCTATTCGTCTCACTAATGGAGAATCTCTTGTTCAATATTATGTTCCTTATCTCTCT 290 Query 646 GCTATTCAGATTTTCACCTCTCGTTCTTCCTTGATCCGCTTAAGGGATGATTCTGAAGAT 705 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 291 GCTATTCAGATTTTCACCTCTCGTTCTTCCTTGATCCGCTTTAGGGATGACTCTGAAGAT 350 Query 706 GGGGAAAGCAGAGATTCGTTTAGTGATTCATATAGTGATGAGAGTGAAAGTGATAAACTT 765 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 351 GGGGAAAGCAGAGATTCCTTTAGTGATTCATATAGTGATGAGAGTGAAAGTGATAAACTT 410 Query 766 TCGAGATGTGCTTCTGATGAAGGACTTGAACATGACGCTCTCTTGCATCCTAATGATCGG 825 ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 411 TCGAGATGTGCTTCTGAGGAAGGACTTGAACATGACGCTCTCTTGCATCCGAATGATCGC 470 Query 826 TTGGGATATCTTTATCTGCAATACTTTGAGAGATCAGCTCCTTATGCTCGAGTTCCTCTC 885 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471 TTGGGATATCTTTATCTGCAATACTTTGAGAGATCAGCTCCTTATGCTCGAGTTCCTCTC 530 Query 886 ATGGATAAGATCAATGAATTGGCTCAAAGGTACCCGGGACTAATGTCGTTGCGAAGCGTA 945 ||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| Sbjct 531 ATGGATAAGATCAATGAATTGGCTCAAAGGTACCCTGGATTAATGTCGTTGAGAAGCGTA 590 Query 946 GATCTTTCCCCGGCAAGTTGGATGGCGGTAGCGTGGTACCCTATTTACCATATTCCAATG 1005 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 591 GATCTTTCCCCGGCAAGTTGGATGGCGGTAGCGTGGTACCCAATTTACCATATTCCAATG 650 Query 1006 GGAAGGACCATCAAAGATTTGTCCACTTGTTTCCTCACTTATCACACTCTTTCATCTTCT 1065 ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 651 GGAAGGACCATCAAAGATTTGTCCACTTGTTTCCTTAGTTATCACACTCTTTCATCTTCT 710 Query 1066 TTCCAAGATATGGAGCCAGAAGAAAATGGCGGGGAAAAGGAGAGGATCCGGAAGGAAGGA 1125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 711 TTCCAAGATATGGAGCCAGAAGAAAATGGCGGGGAAAAGGAGAGGATCCGGAAGGAAGGA 770 Query 1126 GAAGGTGTAACTTTGCTTCCTTTTGGGTTAGCCACTTATAAGATGCAAGGCAATGTTTGG 1185 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 771 GAAGGTGTAACTTTGCTTCCTTTTGGATTAGCCACTTACAAGATGCAAGGCAATGTTTGG 830 Query 1186 CTCTCGGAAGACGATCAAGGTCAAGATCAAGAGCGAGTTCTTTCGCTTCTAAGTGTTGCG 1245 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 831 CTCTCGGAAGACGATCAAGGTCAAGATCAAGAGCGAGTACTGTCGCTTCTAAGTGTTGCG 890 Query 1246 GATTCTTGGCTAAAACAGCTAAGAGTCCAACACCATGACTTCAACTACTTCTCAAGAATG 1305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 891 GATTCTTGGCTAAAACAGCTAAGAGTCCAACACCATGACTTCAACTACTTCTCAAGAATG 950 Query 1306 GCTCACCGTGGCTGAAACAAATCCGTTGCTATA 1338 ||||||||||||| |||||||||||| |||||| Sbjct 951 GCTCACCGTGGCTAAAACAAATCCGTCGCTATA 983 > Ahg470333 jgi|Araly1|470333|fgenesh2_kg.1__287__AT1G03610.1 Length=1605 Score = 837 bits (453), Expect = 0.0 Identities = 779/929 (84%), Gaps = 52/929 (6%) Strand=Plus/Plus Query 412 CTTGA-CAGATTCCTTCATTGCACAACA-CCTGTAGTGCCACCCCAATCTCTATCCAAGG 469 ||||| | ||||||||||||||| |||| ||| ||||||||||||||||||| |||||| Sbjct 392 CTTGATC-GATTCCTTCATTGCATAACACCCT-TAGTGCCACCCCAATCTCTCCCCAAGG 449 Query 470 CGGAGATTAGGAGTTTGAATAGGATT-TGGCATCCATGGGAGAGACAAAAGGTTGAGTTT 528 |||||||||| | | ||| |||| |||||||||||||||||| |||||||||||||| Sbjct 450 CGGAGATTAGAACCCTAAAT-CGATTGTGGCATCCATGGGAGAGAGAAAAGGTTGAGTTT 508 Query 529 TTCAGATTGAGTGATCTATGGGATTGTTATGATGAATGGAGTGCTTATGGAGCTGGTGTT 588 ||||| ||||||||| | ||||||||||||||||||||||| |||||||||||| | || Sbjct 509 TTCAGGTTGAGTGATTTGTGGGATTGTTATGATGAATGGAGCGCTTATGGAGCTAGCGTC 568 Query 589 CCAATTCGTCTCT-CTAATGGAGAATCTCTTGTTCAATATTATGTTCCCTATCTCTCTGC 647 || |||| | | | | ||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 569 CCTATTCATAT-TACCAATGGAGAATCTCTTGTTCAATACTATGTTCCTTATCTCTCTGC 627 Query 648 TATTCAGATTTTCACCTCTCGTTCTTCCTTGATCCGCTTAAGGGATGATTCTGAAGATGG 707 || |||||||||||||||| ||| ||||||||||| |||||||| || ||||||||||| Sbjct 628 CATCCAGATTTTCACCTCTCATTCCTCCTTGATCCGATTAAGGGAAGAGTCTGAAGATGG 687 Query 708 GGAAAGCAGAGATTCGTTTAGTGATTCATATAGTGA-TGAGAGTGAAAGTGATAAACTTT 766 |||| | ||| | ||| ||| | | ||| || | || || || ||| | Sbjct 688 GGAATG-TGAG----G-GTAGAGATCCGTTTAGCGATTCAG-GT---AGCGAT-GA---- 732 Query 767 CGAGATGTGCTTCTGATGAAGGACTT--GAACATGACGCTCTCTTGCATCCTAATGATCG 824 ||| ||| | ||||| ||||||||| ||||| || | ||||||||||| |||||||| Sbjct 733 -GAG-TGT-C-TCTGAGGAAGGACTTGAGAACA--ACACGCTCTTGCATCCAAATGATCG 786 Query 825 GTTGGGATATCTTTATCTGCAATACTTTGAGAGATCAGCTCCTTATGCTC-GAGTTCCTC 883 ||||| ||||||||||| ||||||||||||||||||||||||||| | | ||||||||| Sbjct 787 TTTGGGTTATCTTTATCTCCAATACTTTGAGAGATCAGCTCCTTATAC-CAGAGTTCCTC 845 Query 884 TCATGGATAAGATCAATGAATTGGCTCAAAGGTACCCGGGACTAATGTCGTTGCGAAGCG 943 | ||||||||||||||||||||||||||||| ||||||||| | ||||||||| |||||| Sbjct 846 TGATGGATAAGATCAATGAATTGGCTCAAAGATACCCGGGATTGATGTCGTTGAGAAGCG 905 Query 944 TAGATCTTTCCCCGGCAAGTTGGATGGCGGTAGCGTGGTACCCTATTTACCATATTCCAA 1003 | |||||||| || |||||||||||| | |||||||||||||| ||||||||||| |||| Sbjct 906 TTGATCTTTCTCCAGCAAGTTGGATGTCAGTAGCGTGGTACCCGATTTACCATATACCAA 965 Query 1004 TGGGAAGGACCATCAAAGATTTGTCCACTTGTTTCCTCACTTATCACACTCTTTCATCTT 1063 ||||||| ||||| ||||| || |||||||||||||||||||||||||||||||| |||| Sbjct 966 TGGGAAGAACCATTAAAGACTTATCCACTTGTTTCCTCACTTATCACACTCTTTCCTCTT 1025 Query 1064 CTTTCCAAGATATGGAGCCAGAAGAAAATGGCGGGGAAAAGGAGAGGATCCGGAAGGAAG 1123 |||||||||||||||| |||||||||||||| ||||| ||||||||| | |||| ||||| Sbjct 1026 CTTTCCAAGATATGGAACCAGAAGAAAATGGTGGGGACAAGGAGAGGGTGCGGAGGGAAG 1085 Query 1124 GAGAAGGTGTAACTTTGCTTCCTTTTGGGTTAGCCACTTATAAGATGCAAGGCAATGTTT 1183 | |||| | ||||| |||| || || ||| | || ||||| ||||||||||| |||||| Sbjct 1086 GGGAAGATATAACTCTGCTCCCATTCGGGATGGCTACTTACAAGATGCAAGGTGATGTTT 1145 Query 1184 GGCTCTCGGAAGACGATCAAGGTCAAGATCAAGAGCGAGTT--CTTTCGCTTCTA-AGTG 1240 |||| ||| | ||| | | | | ||||||||| || || ||| ||||| || |||| Sbjct 1146 GGCTTTCGCAGGACCA-CGA--T---GATCAAGAGAGA-TTGGCTT-CGCTT-TATAGTG 1196 Query 1241 TTGCGGATTCTTGGCTAAAACAGCTAAGAGTCCAACACCATGACTTCAACTACTTCT-CA 1299 | ||||||||||||||||||||||| || |||||||| ||||||||||||||||||| || Sbjct 1197 TCGCGGATTCTTGGCTAAAACAGCTTAGGGTCCAACATCATGACTTCAACTACTTCTGCA 1256 Query 1300 --A-G--AATGGCTCACCGTGGCTGAAAC 1323 | | |||| |||| ||||||| |||| Sbjct 1257 GTATGTCAATGACTCATCGTGGCTAAAAC 1285 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65896123850 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5