BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G03520.1 Length=924 Score E Sequences producing significant alignments: (Bits) Value Ahg490216 jgi|Araly1|490216|fgenesh2_kg.6__3350__AT4G03520.1 1116 0.0 > Ahg490216 jgi|Araly1|490216|fgenesh2_kg.6__3350__AT4G03520.1 Length=851 Score = 1116 bits (604), Expect = 0.0 Identities = 795/880 (90%), Gaps = 41/880 (5%) Strand=Plus/Plus Query 45 tagtttcgttatctttttattttctctatctatctggatattattttttcACTTGGGGAT 104 ||||||||||||||||||| || || ||||||||||||||| |||| ||||||||||| Sbjct 1 TAGTTTCGTTATCTTTTTA-ATT-TC--TCTATCTGGATATTA-TTTTACACTTGGGGAT 55 Query 105 TTGGAGAAAC-CTCTCCTCTCTCTATCTAT--AGCCATGGCTGCTTTCACTTGTACCTCT 161 | |||||| | ||||| || |||||||||| |||||||||||||||||||||||||||| Sbjct 56 TAGGAGAATCTCTCTCGTC-CTCTATCTATAGAGCCATGGCTGCTTTCACTTGTACCTCT 114 Query 162 CGTCCTCCGATTTCTCTCCGCTCCGAGACCAGAATCGTATCCTCATCACCATCGGCTTCT 221 |||||||||||||||||||| || ||||||| ||||| |||| | |||||||||||||| Sbjct 115 CGTCCTCCGATTTCTCTCCGTTCTGAGACCAAAATCGCATCC--A-CACCATCGGCTTCT 171 Query 222 TCTCTCTCTTCTCGGCGGATGTTCGCCGTCTTACCGGAATCATCAGGTTTGAGAATCCGT 281 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 172 TCTCTCTCTTCTCGGCGGATGTTCGCCGTGTTACCGGAATCATCAGGTTTGAGAATCCGT 231 Query 282 CTTTCTCTCTCTCCGGCTTCGTTGACCTCGATTCATCA--A-CCTAGGGTTTCTCGATTA 338 |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 232 CTTTCTCTTTCTCCGGCTTCGTTGACCTCGATTCATCATCATCCTAGGGTTTCTCGATTG 291 Query 339 CGAAGAGCCGTCGTCTGTGAAGCTCAGGAAACTACTACCGATATTCAAGTGGTCAATGAC 398 |||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 292 CGAAGAGCTGTCGTCTGTGAAGCCCAGGAAACTACTACCGATATTCCAGTGGTCAATGAC 351 Query 399 TCGACATGGGACTCTCTAGTTCTTAAAGCA-ACTGGGCCTGTAGTTG-TCGACTTTTGGG 456 || ||||||||||||||||||||||| ||| | |||||||||| ||| |||||||||||| Sbjct 352 TCAACATGGGACTCTCTAGTTCTTAAGGCAGA-TGGGCCTGTA-TTGGTCGACTTTTGGG 409 Query 457 CACCATGGTGTGGACCTTGCAAGATGATTGATCCGCTTGTAAACGATCTAGCACAGCATT 516 ||||||||||||||||||||||||||||||| || || || || ||||||||||| || | Sbjct 410 CACCATGGTGTGGACCTTGCAAGATGATTGACCCTCTCGTGAATGATCTAGCACAACAAT 469 Query 517 ACACTGGGAAGATCAAGTTCTACAAATTAAACACTGATGAATCTCCTA-ATACTCCCG-G 574 |||| ||||||||||||||||||||| ||||||| |||||||||||| | || ||| | Sbjct 470 ACACCGGGAAGATCAAGTTCTACAAACTAAACACCGATGAATCTCCTTCA-AC-CCCAAG 527 Query 575 CCAGTACGGAGTTAGAAGCATCCCAACGATCATGATCTTTGTCGGTGGCGAGAAGAAGGA 634 |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 528 CCAGTATGGAGTTAGAAGCATCCCAACGATCATGATCTTTGTCAATGGCGAGAAGAAGGA 587 Query 635 TACAATCATAGGTGCAGTGCCCAAAACCACACTCACATCTAGCCTCGACAAGTTCTTGCC 694 ||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| Sbjct 588 TACAATCATAGGTGCAGTGCCAAAAACCACACTCACATCTAGCATTGACAAGTTCTTGCA 647 Query 695 ATGAAATATCACTTGTGGAGTCTGTAAGATCTCGTATC-TCTCTGTCTCTCGTTCTTGTT 753 ||||||| ||||| ||| ||||||||||||||| |||| | ||| ||||||| ||||||| Sbjct 648 ATGAAATTTCACT-GTG-AGTCTGTAAGATCTC-TATCAT-TCTATCTCTCGCTCTTGTT 703 Query 754 CTCATTATCTCTGTAACTCAT-TATCACTGAACATCTAGACCTGGATAAATAATATGATG 812 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 704 CTCATTATCTCTGTAACTCAGCTATCACTGAACATCTAGACCTGGATAAATAATATGATG 763 Query 813 TCATGTCTTATGTCATTTTTACTGGTTTGAAGATGTTTTGAGATGCGGAACTAAAGGTAT 872 ||||||||| | | ||||||||||||||||||||||||||||||||| || Sbjct 764 TCATGTCTT----C-T-------GGTTTGAAGATGTTTTGAGATGCGGAACTAAAGAAAT 811 Query 873 CAAAGAACAATCTTGGACTAGACTAATGGAACCACATTAA 912 |||||| |||||||||||||||||||||||||| |||||| Sbjct 812 CAAAGATCAATCTTGGACTAGACTAATGGAACCGCATTAA 851 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34272502383 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5