BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G03520.1

Length=924
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490216 jgi|Araly1|490216|fgenesh2_kg.6__3350__AT4G03520.1        1116    0.0  


> Ahg490216 jgi|Araly1|490216|fgenesh2_kg.6__3350__AT4G03520.1
Length=851

 Score = 1116 bits (604),  Expect = 0.0
 Identities = 795/880 (90%), Gaps = 41/880 (5%)
 Strand=Plus/Plus

Query  45   tagtttcgttatctttttattttctctatctatctggatattattttttcACTTGGGGAT  104
            |||||||||||||||||||  || ||  ||||||||||||||| |||| |||||||||||
Sbjct  1    TAGTTTCGTTATCTTTTTA-ATT-TC--TCTATCTGGATATTA-TTTTACACTTGGGGAT  55

Query  105  TTGGAGAAAC-CTCTCCTCTCTCTATCTAT--AGCCATGGCTGCTTTCACTTGTACCTCT  161
            | |||||| | ||||| || ||||||||||  ||||||||||||||||||||||||||||
Sbjct  56   TAGGAGAATCTCTCTCGTC-CTCTATCTATAGAGCCATGGCTGCTTTCACTTGTACCTCT  114

Query  162  CGTCCTCCGATTTCTCTCCGCTCCGAGACCAGAATCGTATCCTCATCACCATCGGCTTCT  221
            |||||||||||||||||||| || ||||||| ||||| ||||  | ||||||||||||||
Sbjct  115  CGTCCTCCGATTTCTCTCCGTTCTGAGACCAAAATCGCATCC--A-CACCATCGGCTTCT  171

Query  222  TCTCTCTCTTCTCGGCGGATGTTCGCCGTCTTACCGGAATCATCAGGTTTGAGAATCCGT  281
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  172  TCTCTCTCTTCTCGGCGGATGTTCGCCGTGTTACCGGAATCATCAGGTTTGAGAATCCGT  231

Query  282  CTTTCTCTCTCTCCGGCTTCGTTGACCTCGATTCATCA--A-CCTAGGGTTTCTCGATTA  338
            |||||||| |||||||||||||||||||||||||||||  | ||||||||||||||||| 
Sbjct  232  CTTTCTCTTTCTCCGGCTTCGTTGACCTCGATTCATCATCATCCTAGGGTTTCTCGATTG  291

Query  339  CGAAGAGCCGTCGTCTGTGAAGCTCAGGAAACTACTACCGATATTCAAGTGGTCAATGAC  398
            |||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct  292  CGAAGAGCTGTCGTCTGTGAAGCCCAGGAAACTACTACCGATATTCCAGTGGTCAATGAC  351

Query  399  TCGACATGGGACTCTCTAGTTCTTAAAGCA-ACTGGGCCTGTAGTTG-TCGACTTTTGGG  456
            || ||||||||||||||||||||||| ||| | |||||||||| ||| ||||||||||||
Sbjct  352  TCAACATGGGACTCTCTAGTTCTTAAGGCAGA-TGGGCCTGTA-TTGGTCGACTTTTGGG  409

Query  457  CACCATGGTGTGGACCTTGCAAGATGATTGATCCGCTTGTAAACGATCTAGCACAGCATT  516
            ||||||||||||||||||||||||||||||| || || || || ||||||||||| || |
Sbjct  410  CACCATGGTGTGGACCTTGCAAGATGATTGACCCTCTCGTGAATGATCTAGCACAACAAT  469

Query  517  ACACTGGGAAGATCAAGTTCTACAAATTAAACACTGATGAATCTCCTA-ATACTCCCG-G  574
            |||| ||||||||||||||||||||| ||||||| ||||||||||||  | || |||  |
Sbjct  470  ACACCGGGAAGATCAAGTTCTACAAACTAAACACCGATGAATCTCCTTCA-AC-CCCAAG  527

Query  575  CCAGTACGGAGTTAGAAGCATCCCAACGATCATGATCTTTGTCGGTGGCGAGAAGAAGGA  634
            |||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct  528  CCAGTATGGAGTTAGAAGCATCCCAACGATCATGATCTTTGTCAATGGCGAGAAGAAGGA  587

Query  635  TACAATCATAGGTGCAGTGCCCAAAACCACACTCACATCTAGCCTCGACAAGTTCTTGCC  694
            ||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| 
Sbjct  588  TACAATCATAGGTGCAGTGCCAAAAACCACACTCACATCTAGCATTGACAAGTTCTTGCA  647

Query  695  ATGAAATATCACTTGTGGAGTCTGTAAGATCTCGTATC-TCTCTGTCTCTCGTTCTTGTT  753
            ||||||| ||||| ||| ||||||||||||||| |||| | ||| ||||||| |||||||
Sbjct  648  ATGAAATTTCACT-GTG-AGTCTGTAAGATCTC-TATCAT-TCTATCTCTCGCTCTTGTT  703

Query  754  CTCATTATCTCTGTAACTCAT-TATCACTGAACATCTAGACCTGGATAAATAATATGATG  812
            ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct  704  CTCATTATCTCTGTAACTCAGCTATCACTGAACATCTAGACCTGGATAAATAATATGATG  763

Query  813  TCATGTCTTATGTCATTTTTACTGGTTTGAAGATGTTTTGAGATGCGGAACTAAAGGTAT  872
            |||||||||    | |       |||||||||||||||||||||||||||||||||  ||
Sbjct  764  TCATGTCTT----C-T-------GGTTTGAAGATGTTTTGAGATGCGGAACTAAAGAAAT  811

Query  873  CAAAGAACAATCTTGGACTAGACTAATGGAACCACATTAA  912
            |||||| |||||||||||||||||||||||||| ||||||
Sbjct  812  CAAAGATCAATCTTGGACTAGACTAATGGAACCGCATTAA  851



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34272502383


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5