BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03960.1
Length=953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490073 jgi|Araly1|490073|fgenesh2_kg.6__3207__AT4G03960.1 1142 0.0
> Ahg490073 jgi|Araly1|490073|fgenesh2_kg.6__3207__AT4G03960.1
Length=801
Score = 1142 bits (618), Expect = 0.0
Identities = 747/806 (93%), Gaps = 21/806 (3%)
Strand=Plus/Plus
Query 137 AATACAATCATGACGTTAGAGAGTTACGCCGGCGATGTTCACACGGTACCACAATCGGAG 196
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1 AATACCATCATGACGTTAGATAGTTACGCCGGCGATGTTCACACTGTACCACAATCGGAG 60
Query 197 AACTCGATGGAGGAGAGAGGCGGCGGTGAGCTTTTCGTGCCACCTCTTAACTTCGCTATG 256
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 61 AACTCGATGGAGGAGAGAGGCGGCGGTGAGCTATACGTGCCACCTCTTAACTTCGCTATG 120
Query 257 GTCGATAATGGAATTTTCCGTTCTGGTTTTCCTGAACCCGTCAGTTTCAGCTTTCTCCAG 316
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 121 GTCGATAATGGAATTTTCCGTTCTGGTTTTCCTGAACCAGTCAGTTTCAGCTTCCTCCAG 180
Query 317 TCTTTGCGTCTCAAATCCATCATATATTTGTGTCCTGAGGCATATCCAGAGGTGAATAGA 376
||| |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 TCTCTGCGACTCCGATCCATCATATATTTGTGCCCTGAGGCATATCCAGAGGTGAATAGA 240
Query 377 GAGTTTGCAAAATCAAATGGGATCCAAGTTTTTCAATTTGGAATTGAAAGATGCAAGGAA 436
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAATTTGCAAAATCAAATGGGATCCAAGTTTTTCAATTTGGAATTGAAAGATGCAAGGAA 300
Query 437 CCATTTGTTAATATCCCTGACGAGGTAATCCGAGAAGCCTTACAAGTACTTCTAGATACA 496
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 CCCTTTGTTAATATCCCTGACGAGGTAATCCGAGAAGCATTACAAGTACTTCTAGATACA 360
Query 497 GAGAATCATCCTGTCTTGATTCATTGCAAAAGTGGAAAGCATCGGACGGGATGTCTTGTA 556
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 GAGAATCATCCTGTCTTGATTCATTGCAAAAGTGGCAAGCATCGGACGGGATGTCTTGTA 420
Query 557 GGTTGTGTGAGGAAGATTCAAAGATGGTGTTTGTCTTCTATCTTCGACGAGTACCAAAGA 616
|||||||||||||||||||| |||||||||||||| || || ||||| ||||||||||||
Sbjct 421 GGTTGTGTGAGGAAGATTCAGAGATGGTGTTTGTCCTCCATTTTCGATGAGTACCAAAGA 480
Query 617 TTCGCAGCTGCGAAAGCTAGAATCTCAGACCAGAGATTCATGGAGCTCTTTGACATCTCC 676
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 TTCGCAGCTGCGAAAGCTAGAATCTCAGACCAAAGATTCATGGAGCTCTTTGACATCTCC 540
Query 677 AATCTAAAGCATACACCACTTTCCTTCTCATGCTCCAAGAGGTATACTAATACTATTGAT 736
|||||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||||
Sbjct 541 AATCTAAAGCATTCACCACTCAACTTCTCATGTTCCAAGAGGTATAATAATACTATTGAT 600
Query 737 TACTGAAGaaa-aaaaTGTATAACTT-TGTGTTGAATGCAACTTGTAGTTTTGAAGCTAG 794
||||||| ||| ||||||||| || |||||||||||||| |||||||||| |||||||
Sbjct 601 TACTGAA-AAACAAAATGTAT---TTATGTGTTGAATGCAAGTTGTAGTTTTTAAGCTAG 656
Query 795 ATGA--AAA-TGGGAGATTTTG--ATCTTTCAATAAAAGTCCGTTTATTCCAAATCAAAT 849
|||| ||| ||||||||||| |||||||||||||| | ||||||||| |||| ||||
Sbjct 657 ATGATGAAAATGGGAGATTTTCTTATCTTTCAATAAAAATACGTTTATTCAAAATTAAAT 716
Query 850 AAATAAAAATTGGATCGGATGGTTGTAGAAAAATAAGAGACACTCCTT--T---AAT--- 901
||||||||||||||||||| ||||||||||| ||| | |||||||||| | |||
Sbjct 717 AAATAAAAATTGGATCGGA-GGTTGTAGAAATATACGCGACACTCCTTCATTTTAATTAA 775
Query 902 -CCTTTTAAATGCTATCATGTAGAAC 926
|||||||||||||||||||||||||
Sbjct 776 TCCTTTTAAATGCTATCATGTAGAAC 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35378066976
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5