BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04020.1
Length=1378
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943195 jgi|Araly1|943195|scaffold_603739.1 1380 0.0
Ahg945904 jgi|Araly1|945904|scaffold_702133.1 654 0.0
> Ahg943195 jgi|Araly1|943195|scaffold_603739.1
Length=1009
Score = 1380 bits (747), Expect = 0.0
Identities = 923/1006 (92%), Gaps = 19/1006 (2%)
Strand=Plus/Plus
Query 1 GAAGAACAAACACAAAAATGGCGACGGTACCATTGTTCACCCAGTTTCCCTGCAAAACCC 60
||| || ||| |||||||||||||||||||||||||||| ||| || |||||||||| ||
Sbjct 5 GAA-AAAAAAAACAAAAATGGCGACGGTACCATTGTTCAGCCAATTCCCCTGCAAAATCC 63
Query 61 TAAATCCAAGCTCATCAAACACTAAA-CACCAATCGAAATCTCCGATCCTACTACCGATT 119
|| |||||||||||||||| ||||| | ||| || ||||||||||| ||||| ||||||
Sbjct 64 TAGTTCCAAGCTCATCAAACTCTAAATC-CCAGTCAAAATCTCCGATTCTACTGCCGATT 122
Query 120 AACTCAATAAATCGGCGATCGGAGATTGGAGTCTCTGTTCATCGGCCAGATTTCAAAATC 179
|||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 123 AACTCAGTCAATCGGCGATCGGAGATTGGAATCTCTGTTCATCGGCCAGATTTCAAAATC 182
Query 180 CGAGCGACGGACATCGACGACGAATGGGGTCAAGATGGAGTGGAGAGAGTATT-TGCCTC 238
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| | ||||
Sbjct 183 CGAGCCACGGACATCGACGACGAATGGGGTCAAGAAGGAGTTGAGAGAGTATTAT-CCTC 241
Query 239 ATCTTCAACC-GTATCGGT-----AG-CAG-A--T-A--AAGCAATCGAATCCGTGGAGG 285
||| || ||| |||||||| || || | | | ||||||||||||||| |||||
Sbjct 242 ATCGTC-ACCAGTATCGGTGGCGGAGAAAGTAGCTGATGAAGCAATCGAATCCGCGGAGG 300
Query 286 AGACGGAGAGGCTAAAGAGATCACTAGCGGATTCGTTGTACGGAACAGATCGAGGTTTAA 345
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 AGACGGAGAGGCTAAAGAGATCGCTAGCGGATTCGTTGTACGGAACAGATCGAGGTTTAA 360
Query 346 GCGTATCGAGTGATACGAGAGCTGAGATCAGCGAGCTCATCACACAGCTCGAGTCTAAGA 405
||| ||| || ||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 361 GCGCATCTAGCGATACGAGAGCGGAGATCAGTGAGCTTATCACACAGCTCGAGTCTAAGA 420
Query 406 ACCCTACTCCAGCTCCTAACGAAGCTCTGTTTCTCCTCAACGGCAAATGGATCCTCGCCT 465
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 421 ACCCTACTCCAGCTCCTAACGAAGCTCTGTTTCTCCTCAACGGCAAATGGATTCTCGCGT 480
Query 466 ACACGTCGTTCGTGGGGTTGTTCCCATTGCTCTCACGAAGAATTGAACCGTTGGTTAAAG 525
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACACGTCGTTCGTGAGTTTGTTCCCATTGCTCTCACGAAGAATTGAACCGTTGGTTAAAG 540
Query 526 TGGATGAGATCTCACAAACCATTGATTCCGATAGCTTCACCGTTCAAAACTCTGTCCGGT 585
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 541 TGGATGAGATCTCACAGACCATTGATTCCGATAGCTTCACCGTTCAAAATTCTGTTCGGT 600
Query 586 TCGCTGGTCCGTTTTCCACAACGTCGTTTAGCACCAACGCTAAGTTTGAAATCCGAAGTC 645
| |||||||| |||||||| || ||||||||||| ||||||||||| |||||||||||||
Sbjct 601 TTGCTGGTCCATTTTCCACTACATCGTTTAGCACTAACGCTAAGTTCGAAATCCGAAGTC 660
Query 646 CTAAACGTGTCCAGATTAAGTTCGAGCAAGGTGTTATAGGGACTCCTCAGCTAACGGATT 705
||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 661 CTAAACGCGTCCAGATTAAGTTCGAGCAAGGCGTTATTGGGACTCCTCAGCTAACGGATT 720
Query 706 CGATTGAAATACCGGAATCCGTGGAGGTTCTTGGTCAGAAAATCGATCTCAATCCCATTA 765
|||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 721 CGATTGAAATCCCTGAATCCGTGGAGGTTCTTGGTCAGAAAATCGATCTCAACCCCATTA 780
Query 766 AAGGTTTACTTACATCAGTCCAAGACACTGCTTCTTCAGTGGCTAGAACCATTTCAAACC 825
|||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 781 AAGGGTTACTTACATCGGTCCAAGACACGGCTTCTTCAGTGGCTAGAACCATTTCAAACC 840
Query 826 AACCACCATTGAAGTTTTCTCTGCCTAGTGACAACACGCAGTCGTGGCTGCTCACAACTT 885
|||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 841 AACCACCATTAAAGTTTTCTCTGCCTAGTGATAACACACAGTCGTGGCTGCTCACGACTT 900
Query 886 ATCTCGACAAGGACCTTCGGATCTCGAGAGGCGATGGTGGAAGCGTCTATGTGCTCATCA 945
|||||||||| |||||| ||||||| ||||||||||| |||||||||| ||| |||||||
Sbjct 901 ATCTCGACAAAGACCTTAGGATCTCTAGAGGCGATGGCGGAAGCGTCTTTGTTCTCATCA 960
Query 946 AAGAAGGAAGCTCTCTCTTAAACCCTTAAATCATCATAACTCTCAT 991
|||||||||||||||||||||||||||||||||| || |||| |||
Sbjct 961 AAGAAGGAAGCTCTCTCTTAAACCCTTAAATCATAATTACTCGCAT 1006
> Ahg945904 jgi|Araly1|945904|scaffold_702133.1
Length=976
Score = 654 bits (354), Expect = 0.0
Identities = 597/715 (83%), Gaps = 14/715 (2%)
Strand=Plus/Plus
Query 265 AAGCAATCGAATCCGTGGAGGAGACGGAGAGGCTAAAGAGATCACTAGCGGATTCGTTGT 324
|||| || ||| | ||||||||||| ||| |||| |||||||| || |||||||||||||
Sbjct 247 AAGCCATTGAAGCTGTGGAGGAGACAGAGCGGCTTAAGAGATCGCTCGCGGATTCGTTGT 306
Query 325 ACGGAACAGATCGAGG-TTTAAGCGTATCGAGTGATACGAGAGCTGAGATCAGCGAGCTC 383
|||||||||||||||| || || || |||||| || || |||||||| ||| | || ||
Sbjct 307 ACGGAACAGATCGAGGATTGAA-CGCATCGAGCGAAACCAGAGCTGAAATCGGAGATCTA 365
Query 384 ATCACACAGCTCGAGTCTAAGAACCCTACTCCAGCTCCTAACG-AAGCTCTGTTTC-TCC 441
|||||||||||||||||||||||||||||||||||||| | || ||||||| |||| | |
Sbjct 366 ATCACACAGCTCGAGTCTAAGAACCCTACTCCAGCTCCGA-CGGAAGCTCT-TTTCCTTC 423
Query 442 TCAACGGCAAATGGATCCTCGCCTACACGTCGTTCGTGGGGTTGTTCCCATTGCTCTCAC 501
|||||||||||||||| ||||| ||||| ||||||||| |||||||| ||||| ||||
Sbjct 424 TCAACGGCAAATGGATTCTCGCGTACACATCGTTCGTGAATTTGTTCCCGTTGCTTTCAC 483
Query 502 GAAGAATTGAACCGTTGGTTAAAGTGGATGAGATCTCACAAACCATTGATTCCGATAGCT 561
|| |||| | || || || ||||| |||||||||||||| ||||||||||| || | ||
Sbjct 484 GAGGAATCGTGCCATTAGTAAAAGTAGATGAGATCTCACAGACCATTGATTCAGAAAACT 543
Query 562 TCACCGTTCAAAACTCTGTCCGGTTCGCTGGTCCGTTTTCC-ACAA-CGTCGTTTAGCAC 619
|||| || || ||||| || || ||||||||||| | | |||| | ||| |||||||
Sbjct 544 TCACAGTCCAGAACTCCGTTCGTTTCGCTGGTCC-TCTAGGTACAAAC-TCGATTAGCAC 601
Query 620 CAACGCTAAGTTTGAAATCCGAAGTCCTAAACGTGTCCAGATTAAGTTCGAGCAAGGTGT 679
||||||||| || ||||||||||| |||||||| |||||||||||||| |||||||| ||
Sbjct 602 CAACGCTAAATTCGAAATCCGAAGCCCTAAACGCGTCCAGATTAAGTTTGAGCAAGGCGT 661
Query 680 TATAGGGACTCCTCAGCTAACGGATTCGATTGAAATACCGGAATCCGTGGAGGTTCTTGG 739
|| ||||| ||||||||||||||||| ||||| |||||||||| || |||||||||||
Sbjct 662 AATTGGGACGCCTCAGCTAACGGATTCTATTGAGATACCGGAATATGTAGAGGTTCTTGG 721
Query 740 TCAGAAA-ATCGATCTCAATCCC-ATTAAAGGTTTACTTACATCAGTCCAAGACACTGCT 797
||| ||| || ||||| || ||| || | ||| |||||||| || || ||||| || ||
Sbjct 722 TCA-AAAGATAGATCTTAA-CCCGATCAGAGGGTTACTTACCTCGGTGCAAGATACAGCC 779
Query 798 TCTTCAGTGGCTAGAACCATTTCAAACCAACCACCATTGAAGTTTTCTCTGCCTAGTGAC 857
|| || |||||||||||||| |||| ||||||||||||||| || ||| |||| | |||
Sbjct 780 TCGTCTGTGGCTAGAACCATATCAAGCCAACCACCATTGAAATTCTCTTTGCCGGGGGAC 839
Query 858 AACACGCAGTCGTGGCTGCTCACAACTTATCTCGACAAGGACCTTCGGATCTCGAGAGGC 917
|| ||||||| ||||| ||||| |||||||| ||||| ||| |||||||||| |||||
Sbjct 840 AATGCGCAGTCTTGGCTACTCACGACTTATCTAGACAAAGACATTCGGATCTCTAGAGGA 899
Query 918 GATGGTGGAAGCGTCTATGTGCTCATCAAAGAAGGAAGCTCTCTCTTAAACCCTT 972
|| |||||||| |||| |||||| ||||||||||||||| ||||||| || ||||
Sbjct 900 GACGGTGGAAGTGTCTTTGTGCTTATCAAAGAAGGAAGCCCTCTCTTGAATCCTT 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51580306701
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5