BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G04210.1 Length=1167 Score E Sequences producing significant alignments: (Bits) Value Ahg490080 jgi|Araly1|490080|fgenesh2_kg.6__3214__AT4G04210.1 1474 0.0 Ahg492650 jgi|Araly1|492650|fgenesh2_kg.7__2083__AT4G22150.1 568 4e-161 > Ahg490080 jgi|Araly1|490080|fgenesh2_kg.6__3214__AT4G04210.1 Length=1055 Score = 1474 bits (798), Expect = 0.0 Identities = 977/1061 (92%), Gaps = 21/1061 (2%) Strand=Plus/Plus Query 63 AAAAAACACAATGTCTTCGAAAGACAAGAAACCGTCGAAG-CCATCGAGTAGTCGTGGTG 121 |||||| | ||||||||||||||||||||||||| || || ||||||| ||||||||||| Sbjct 1 AAAAAAGAGAATGTCTTCGAAAGACAAGAAACCGGCG-AGACCATCGACTAGTCGTGGTG 59 Query 122 GAATCCGAACTCTTTCCGATCTTAACCGTAGGTCTGGTCCTGACTCCGACAGTGATTCCG 181 || |||||||||||||||||||||| |||||||||||||| || |||||||||||||||| Sbjct 60 GAGTCCGAACTCTTTCCGATCTTAATCGTAGGTCTGGTCCAGATTCCGACAGTGATTCCG 119 Query 182 ATGGTCCACAAGAATACTACACAGGTGGTGAGAA-AAGTGGTATG-TTAGTTCAAGATCC 239 |||| || |||||||||||||| || ||||| || |||||||||| || ||||||||||| Sbjct 120 ATGGACCTCAAGAATACTACACCGGCGGTGA-AAGAAGTGGTATGCTT-GTTCAAGATCC 177 Query 240 ATCGAAAAAAGATGATGTTGATGAGATATTTAATCAAGCTAGACAACTAGGAGCTGTAGA 299 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 178 ATCGAAAAAAGATGATGTTGATGAGATATTTAATCAAGCTAGACAATTAGGAGCTGTGGA 237 Query 300 AGGACCTCTTGAGCCACCTCCGAGTTCCAGGAGTTTCACTGGAACTGGTAGATTGCTTTC 359 ||||||||||||||| ||| ||||||| |||||||||||||||||||| |||| ||| || Sbjct 238 AGGACCTCTTGAGCCTCCTTCGAGTTCAAGGAGTTTCACTGGAACTGGGAGATCGCTCTC 297 Query 360 TGGTGAAAATGTGCCTACTGGTAATCAACAGCCTGAGCCTGTTGTTCACAACATTGTTTT 419 |||||||||| || |||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 298 TGGTGAAAATATGTCTACTGGTCTTCAACAGCCTGAGCCTGTGGTTCACAACATTGTTTT 357 Query 420 CTGGTCTAATGGTTTCACTATTGATGATGGTCCTTTGAGGAAATTGGATGATCCTGAGAA 479 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 358 CTGGTCTAATGGATTCACTATAGATGATGGTCCTTTGAGGAAATTGGATGATCCTGAGAA 417 Query 480 TGCATCGTTTCTCGAGAGCATTCGAAAGTCTGAGTGCCCGAAAGAGCTTGAGCCTGCCGA 539 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 418 TGCATTGTTTCTCGAGAGCATTCGAAAGTCTGAGTGCCCGAAAGAGCTTGAGCCTGCAGA 477 Query 540 TAGAAGAGCTCCGGTTCATGTCAACTTGATGCGAAAGGAAGAGAAATGCCCTGAAAGACA 599 || |||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 478 TAAAAGAGCCCCGGTTCATGTCAATTTGATGCGAAGGGAAGAGAAATGCCCTGAAAGACA 537 Query 600 GAAACGTAGGGTTTCATTTCAGGGTGTTGGAAGAACTCTAGGTGGTAGCAATGAAGGTAG 659 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || Sbjct 538 GAAACGTAGGGTTTCATTTCAAGGTGTTGGAAGAACTCTAGGTGGTAGCAATGATGGCAG 597 Query 660 CGGAAGTAGCTCACCTGTGGCTCCAGACTCCGCTCCCATTCCCATCCAAACC---GAA-C 715 |||||||||||| ||||| ||||||||||||||| | ||||||||||||||| ||| | Sbjct 598 CGGAAGTAGCTCCCCTGTTGCTCCAGACTCCGCTGCTATTCCCATCCAAACCAACGAAAC 657 Query 716 C--A---GCACCATCTCAAAGTCTTGTAATAGATGAAACCGTTCCAACCACATCGATACA 770 | | |||||| ||| ||||||||||||||||||||| |||||| |||||||||||| Sbjct 658 CGTATCAGCACCACCTCCAAGTCTTGTAATAGATGAAACTATTCCAATCACATCGATACA 717 Query 771 GCTTAGACTAGCGGATGGGACACGTCTGGTGGCTAAGTTCAATCACCATCACACGGTCAA 830 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 718 GCTTAGACTAGCGGATGGGACACGTCTGGTGGGTAAGTTCAATCACCATCACACGGTCAA 777 Query 831 CGACATTCGCGGTTTCATTGACTCATCTCGACCTGGAGCCTC-GTTGAACTACCAGCTTC 889 |||||||||||||||||||||||| ||||| |||||||| || | ||||||||||||||| Sbjct 778 CGACATTCGCGGTTTCATTGACTCCTCTCGTCCTGGAGC-TCCGGTGAACTACCAGCTTC 836 Query 890 AGACAATGGGGTTCCCACCTAAGCCTTTGACTGATCTCACTCAGACCATTGAAGAAGCTG 949 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 837 AGACAATGGGATTCCCACCTAAGCCTTTGACTGATCTCACTCAGACCATCGAAGAAGCTG 896 Query 950 GTCTCGCCAACTCTGTTGTTCTTCAGAAATTCTAGAAAATTCTACAAGGTGTGGTTCTTT 1009 |||| ||||||||||| ||||||||||||||||||||||||||||||||| || |||||| Sbjct 897 GTCTGGCCAACTCTGTCGTTCTTCAGAAATTCTAGAAAATTCTACAAGGTTTG-TTCTTT 955 Query 1010 TT-GTCTATCTATATGCATTATAATGAGATTTTCATAACTGTTGTAGTAACCAGGTCTTT 1068 || |||| |||||||| ||||| ||||||| | |||||||||| |||||||||| ||||| Sbjct 956 TTTGTCTTTCTATATGTATTATTATGAGATCTCCATAACTGTTATAGTAACCAGATCTTT 1015 Query 1069 AAAATGTAAGTTACTTCTTC-ACTCTGTATACTCAGCATAA 1108 |||||||||||||||||||| | | ||||||| |||||||| Sbjct 1016 AAAATGTAAGTTACTTCTTCGATT-TGTATACGCAGCATAA 1055 > Ahg492650 jgi|Araly1|492650|fgenesh2_kg.7__2083__AT4G22150.1 Length=1039 Score = 568 bits (307), Expect = 4e-161 Identities = 507/599 (85%), Gaps = 31/599 (5%) Strand=Plus/Plus Query 73 ATGTCTTCGAAAGACAAGAAACCGTCGAAGCCATCGAGTAGTC-G--TGGTGGAATCCGA 129 ||||| || || |||||||||||| |||||||| ||||| ||| | |||||| ||||| Sbjct 128 ATGTCGTCTAAGGACAAGAAACCGGCGAAGCCAACGAGTGGTCGGACTGGTGGTATCCGT 187 Query 130 ACTCTTTCCGATCTTAACCGTAGGTCTG-GTCCTGACTCCGACAGTGATTCCGATGGTCC 188 || ||||||||||| ||||| || || | | ||||| ||||| ||||| |||||||| || Sbjct 188 ACACTTTCCGATCTGAACCGAAGATCAGAG-CCTGATTCCGATAGTGACTCCGATGGACC 246 Query 189 ACAAGAATACTACACAGGTGGTGAGAAAAGTGGTATG-TTAGTTCAAGAT-C--C-ATCG 243 ||||| |||||||| ||||| || |||||||||||| || ||||| ||| | | | | Sbjct 247 TCAAGAGTACTACACCGGTGGCGAAAAAAGTGGTATGCTT-GTTCAGGATCCTACAAAAG 305 Query 244 -A--AAAA-A-GATGATGTTGATGAGATATTTAATCAAGCTAGACAACTAGGAGCTGTAG 298 | |||| | ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 306 AACCAAAACACGATGATGTTGATGAGATATTTAATCAAGCAAGACAACTAGGAGCTGTAG 365 Query 299 AAGGACCTCTTGAGCCACCTCCGAGTTCCAGGAG-TTTCACTGGAACTGGTAGATTGCTT 357 ||||||||||||||| ||| | |||||||| || ||| |||||||| || ||||||||| Sbjct 366 AAGGACCTCTTGAGCGTCCTTCAAGTTCCAGAAGCTTT-ACTGGAACCGGGAGATTGCTT 424 Query 358 TCTGGTGAAAATGTGCCTACTGG-TAATCAACAGCCTGAGCCTGTTG-TTCACAACATTG 415 ||||| |||| |||||| || || | |||||||||||||||||| | ||||||| ||| Sbjct 425 TCTGGAGAAAGTGTGCCAAC-GGCTCTTCAACAGCCTGAGCCTGT-GATTCACAATATTA 482 Query 416 TTTTCTGGTCTAATGGTTTCACTATTGATGATGGTCCTTTGAGGAAATTGGATGATCCTG 475 |||||||||||||||| |||||| | |||||||| ||||||||||| ||||||||||| | Sbjct 483 TTTTCTGGTCTAATGGATTCACTGTAGATGATGGACCTTTGAGGAAGTTGGATGATCCAG 542 Query 476 AGAATGCATCGTTTCTCGAGAGCATTCGAAAGTCTGAGTGCCCGAAAGAGCTTGAGCCTG 535 |||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||| Sbjct 543 AGAATGCATCTTTTCTTGATAGCATTCGAAAGTCTGAATGCCCGAAAGAGCTTGAGCCTG 602 Query 536 CCGATA-GAAGAGCTCCGGTTCATGTCAA-CTTGATGCGAA-AGGAAGAGAAATGCCCTG 592 | |||| || |||||||||| |||||||| ||| ||| ||| || | ||||||||||||| Sbjct 603 CTGATAAGA-GAGCTCCGGTACATGTCAATCTT-ATGAGAAGAG-ATGAGAAATGCCCTG 659 Query 593 A-AAGACAGAAACGTAGGGTTTCATTTCAGGGTGTTGGAAGAACTCTAGGTGGTAGCAA 650 | || | |||||| || |||| ||||||| || |||||||| |||||||||||| |||| Sbjct 660 AGAA-AGAGAAACTTAAGGTTGCATTTCAAGGAGTTGGAAGGACTCTAGGTGGT-GCAA 716 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43536371214 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5