BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G04330.1 Length=706 Score E Sequences producing significant alignments: (Bits) Value Ahg895509 jgi|Araly1|895509|Al_scaffold_0006_3505 806 0.0 > Ahg895509 jgi|Araly1|895509|Al_scaffold_0006_3505 Length=528 Score = 806 bits (436), Expect = 0.0 Identities = 499/529 (94%), Gaps = 5/529 (1%) Strand=Plus/Plus Query 35 ATGGAGTCATCTTCTTCACTC---CTTCATCACTCTTACCTCTCTTACCTTAATCCAAAA 91 ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGTCATCTTCTTCCCTCATTCTCCATCACTCTTACCTCTCTTACCTTAATCCAAAA 60 Query 92 TTTGGAAAAAGACCTTTGGTTTCTTATCCATTAATGCAGAGTTCGCGAAAATGCAAACAA 151 |||||||||||||||||| |||||| | ||||||||| || |||||||||||| |||||| Sbjct 61 TTTGGAAAAAGACCTTTGCTTTCTTTTGCATTAATGCGGAATTCGCGAAAATGTAAACAA 120 Query 152 ACTCGCATTTGTTCTAACAAGATGTATGTTCCCGGCTTTGGAGAAGCTTCACCGGAGGCT 211 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACTCGAATATGTTCTAACAAGATGTATGTTCCCGGCTTTGGAGAAGCTTCACCGGAGGCT 180 Query 212 AAGGCAGCGAAGCATCTTCATGACTTCTTTACTTACGTTGCAGTGAGGATAGTGTCTGCT 271 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 181 AAAGCAGCGAAGCATCTTCATGACTTCTTTACTTACGTTGCAGTGAGGATAGTTTCTGCT 240 Query 272 CAGCTTGAGAGTTATAATCCTGAGGCTTATATGGAGTTGAGAGAATTTTTAGATACAAAC 331 ||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| Sbjct 241 CAGCTTGAGAGTTATAACCCTGAGGCGTATATGGAGTTGAGAGAATTTTTAGACGCAAAC 300 Query 332 TCTGTAAGTGACGGTGATAAATTCTGCGCCACTCTCATGCGTCGCTCTTCACGTCACATG 391 |||||||||||||| || ||||| || ||||||||||||||||| ||||||||||||||| Sbjct 301 TCTGTAAGTGACGGCGACAAATTTTGTGCCACTCTCATGCGTCGGTCTTCACGTCACATG 360 Query 392 AACTTAGCCCTTCGAATTTTAGAGGTACGGTCTGCTTATTGTAAAAACGATTTCGAATGG 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AACTTAGCCCTTCGAATTTTAGAGGTACGGTCTGCTTATTGTAAAAACGATTTCGAATGG 420 Query 452 GATAATATGAAGCGCCTCGCCTTCAAGAACGTAGATG-ATTCCAACACAAGACTCATGCG 510 |||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 421 GATAATTTGAAGCGCCTCGCCTTCAAGAACGTAGATGGAT-CCAACACAAGACTCATGCG 479 Query 511 CGAGTACGTCTTGGAGACTAGCCATGTCGAAACCGATTCTGATAAGTGA 559 || ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 480 TGAATACGTCTTGGAGACTAGCCATGTCGAAACCGATTCCGATAAGTGA 528 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25961706477 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5