BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04350.1
Length=3081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490089 jgi|Araly1|490089|fgenesh2_kg.6__3223__AT4G04350.1 4903 0.0
> Ahg490089 jgi|Araly1|490089|fgenesh2_kg.6__3223__AT4G04350.1
Length=3063
Score = 4903 bits (2655), Expect = 0.0
Identities = 2939/3075 (96%), Gaps = 23/3075 (1%)
Strand=Plus/Plus
Query 15 TCGTCTCCGGCGAAACAAAACCAGAATGAGCTCTCATCATCAAATCCTCCAAATTCGTTC 74
||||||||||| ||| |||||||||||||| ||| |||||||||||||||| |||| ||
Sbjct 1 TCGTCTCCGGCAAAAAAAAACCAGAATGAG--CTC-TCATCAAATCCTCCAATTTCGCTC 57
Query 75 TGACCCATTTGTTCTATCACACTGTTGCCGCCACACACGCCTCACCAGCTCTCTTACGCT 134
|||||||||||| || ||||||||||||||||| |||| ||||||||||||||| |||||
Sbjct 58 TGACCCATTTGTACTTTCACACTGTTGCCGCCATACACACCTCACCAGCTCTCTAACGCT 117
Query 135 TCAATCTCCTCTAAAGCAGCCCTTTTCATGTCTCCCTTTCCGTTGGCGCCGCTCTTATCG 194
||||||||||||||||||||| ||||| |||| | |||||| ||||| |||||| |||
Sbjct 118 TCAATCTCCTCTAAAGCAGCCTTTTTCCGGTCTTCGTTTCCGGTGGCGTCGCTCTAATCA 177
Query 195 CGGCGGAGTCAGGAGCTCAACGACGGAGACTCATG-GTAGCAAAAAAGAAGCTTTGGTGT 253
|||||||||||||||||||||||||||| |||| | ||| |||| |||||||||||||||
Sbjct 178 CGGCGGAGTCAGGAGCTCAACGACGGAGGCTCA-GAGTAACAAAGAAGAAGCTTTGGTGT 236
Query 254 CGGAAACGGCGACTAC-ATCGATTGAATTGAAAAGGGTCTATCCATTTCACGAAATTGAA 312
||||||| ||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CGGAAACAGCGACGACGA-CGATTGAATTGAAAAGGGTCTATCCATTTCACGAAATTGAG 295
Query 313 CCCAAGTGGCAACGTTATTGGGAAGATAACCGAA-TTTTCCGGACACCAGACGATGTTGA 371
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 296 CCCAAGTGGCAACGTTATTGGGAAGATAACCGAACTTTT-CGGACACCAGACGATGTCGA 354
Query 372 TACTTCGAAACCTAAGTTCTACGTCCTCGACATGTTTCCATATCCAAGTGGAGCAGGATT 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TACTTCGAAACCTAAGTTCTACGTCCTCGACATGTTTCCATATCCAAGTGGAGCAGGATT 414
Query 432 ACATGTGGGACATCCATTGGGTTATACAGCAACTGATATTCTAGCGAGGCTTAGGCGTAT 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 415 ACATGTGGGACATCCATTGGGTTATACAGCAACTGATATTCTAGCGAGGCTTAGGCGAAT 474
Query 492 GCAAGGTTACAATGTGT-TGCATCCTATGGGTTGGGATGCTTTTGGATTGCCTGCTGAAC 550
||||||||||||||| | ||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 475 GCAAGGTTACAATGT-TCTGCATCCTATGGGATGGGATGCTTTTGGATTGCCTGCAGAAC 533
Query 551 AATATGCTATTGAGACAGGAACCCATCCGAAAACTACGACATTGAAGAACATTGACCGCT 610
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 534 AATATGCTATTGAGACAGGAACCCATCCGAAAACTACGACATTAAAGAACATTGACCGCT 593
Query 611 TTCGATTGCAGCTCAAATCATTGGGCTTCTCATACGATTGGGACCGTGAACTTTCTACAA 670
|||| || |||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 594 TTCGTTTACAGCTCAAATCACTGGGCTTCTCATACGATTGGGACCGTGAGCTTTCTACAA 653
Query 671 CAGAGCCAGACTACTACAAATGGACACAATGGATCTTTCTTCAGCTTTATAAGAAAGGTT 730
||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 654 CAGAGCCAGACTATTATAAATGGACACAATGGATCTTTCTTCAGCTTTATAAGAGAGGTT 713
Query 731 TGGCATATCAGGCTGAAGTACCGGTCAATTGGTGCCCGGCTCTTGGTACTGTTTTGGCCA 790
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 714 TGGCATATCAGGCTGAAGTACCCGTCAATTGGTGCCCAGCTCTTGGTACTGTTTTGGCCA 773
Query 791 ATGAAGAAGTGGTGGATGGTGTTAGTGAGCGTGGTGGCCACCCGGTTATAAGAAAGCCGA 850
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 ATGAGGAAGTGGTGGATGGTGTTAGTGAGCGTGGTGGCCACCCGGTTATAAGAAAGCCGA 833
Query 851 TGAGGCAATGGATGCTGAAGATTACTGCGTACGCTGATCGTCTTCTAGAAGATTTGGACG 910
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 834 TGAGGCAATGGATGCTGAAGATTACTGCGTACGCTGATCGTCTTCTGGAAGATTTAGACG 893
Query 911 AGCTTGAGTGGCCTGAAAGTATAAAGGAAATGCAAAGAAACTGGATAGGAAGATCCGAAG 970
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 AGCTCGAGTGGCCTGAAAGTATAAAGGAAATGCAAAGAAACTGGATAGGAAGATCCGAAG 953
Query 971 GAGCTGAGTTGAACTTTTCAATTCTTGATGGGGAAGGCCGAGAAACTGACAAAGAGATTA 1030
||||||| ||||| |||||| |||||||||| |||||||||||||| |||||| ||||||
Sbjct 954 GAGCTGAATTGAATTTTTCATTTCTTGATGGCGAAGGCCGAGAAACCGACAAAAAGATTA 1013
Query 1031 CAGTGTACACCACGAGGCCAGATACACTTTTTGGAGCAACTTACATGGTTGTGGCACCAG 1090
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CAGTTTACACCACGAGGCCAGATACACTTTTTGGAGCAACTTACATGGTTGTGGCACCAG 1073
Query 1091 AGCATCAGTTGTTGTCTTACTTTGTAACCGCAGAACAGAAACAGCAAGTTGAGGAATACA 1150
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 AACATCATTTGTTGTCTTACTTTGTAACCGCAGAACAGAAACAGCAAGTTGAGGAATACA 1133
Query 1151 AAGATTTCGCTTCGAGGAAAAGTGATCTTGAGAGAACAGAACTTCAGAAGGACAAGACGG 1210
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1134 AAGATTTCGCTTCGAGAAAAAGTGATCTTGAGAGAACAGAACTTCAGAAGGACAAGACAG 1193
Query 1211 GCGTATTTACGGGATGTTATGCGAAAAATCCAGCTAATGGAGATGCTATTCCCATATGGG 1270
||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1194 GCGTATTCACGGGATGTTATGCAAAAAATCCAGCTAATGGTGATGCTATTCCCATATGGG 1253
Query 1271 TAGCTGATTATGTTCTAGCTAGTTATGGAACCGGAGCAATCATGGCGGTCCCAGCTCATG 1330
||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1254 TAGCTGACTATGTTCTAGCAAGTTATGGAACCGGAGCAATCATGGCAGTCCCAGCTCATG 1313
Query 1331 ATACTCGGGATAATGAGTTTGCGTTGAAGTATAACATTCCCATCAAGTGGGTAGTGAGAA 1390
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct 1314 ATACTCGGGATAATGAGTTCGCGTTGAAGTATAACATTCCGATCAAGTGGGTAGTGAAAA 1373
Query 1391 ATGAGGCAAATTCAAGTGATGATGCTAAGCAGGTTTATCCCGGATTGGGCATTATTGAAA 1450
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1374 ATGAGGCAAATTCAAGTGATGATGCCAAGCAGGTTTATCCCGGATTGGGCATAATTGAAA 1433
Query 1451 ATTCTTCAACTTTAGAAACAGGACTTGACATAAATCAACTATCTAGCAAAGAAGCTGCTT 1510
|||| |||| || ||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1434 ATTCATCAAGTTCAGAGACAGGACTTGACATAAATCAACTATCTAGCAAAGAAGCTGGTT 1493
Query 1511 TAAAAGTTATTGAATGGGCTGAGAGAACTGGCAATGGAAAGAAAAAGGTAAATTACAAGT 1570
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1494 TAAAAGTTATTGAATGGGCTGAGAGAACCGGAAATGGAAAGAAAAAGGTAAATTACAAGT 1553
Query 1571 TGAGGGATTGGCTATTTGCACGGCAGCGTTACTGGGGTGAACCTATCCCGATTTTAATTT 1630
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 TAAGGGATTGGCTATTTGCACGGCAGCGTTACTGGGGTGAACCTATCCCGATTTTAATTT 1613
Query 1631 TGGATGAGTCTGGTGAAACTATTGCTATTTCAGAATCTGAACTGCCCCTCACTTTGCCTG 1690
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1614 TGGATGAGTCTGGTGAAACTATTGCTGTTTCAGAATCTGAACTGCCACTCACTTTGCCTG 1673
Query 1691 AGTTAAATGATTTTACGCCCACTGGAACAGGGGAACCACCACTGTCAAAAGCAGTTTCAT 1750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 AGTTAAATGATTTTACGCCCACTGGAACAGGGGAACCACCACTGTCAAAAGCAGTTTCAT 1733
Query 1751 GGGTGAACACT-GTAGAT-CCTTCAACAGGAAAACCTGCCAAAAGAGAAACAAGCACTAT 1808
||||||||| | |||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1734 GGGTGAACA-TCGTAGATCCCTT-AACAGGAAAACCTGCCAAAAGAGAAACAAGCACTAT 1791
Query 1809 GCCACAATGGGCTGGGTCTTGCTGGTACTATCTGAGATTCATGGACCCGAAAAACCCTGA 1868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 GCCACAATGGGCTGGGTCTTGCTGGTACTATCTGAGATTCATGGACCCGAAAAACCCTGA 1851
Query 1869 AGCATTAGTTGACAAGGAAAAAGAAAAATACTGGAGCCCAGTAGATGTATATGTTGGTGG 1928
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1852 AGCATTAGTTGACAAGGAAAAAGAAAAATACTGGAGCCCAGTAGATGTATATGTCGGTGG 1911
Query 1929 TGCTGAGCATGCTGTTTTACATTTACTATACTCGAGGTTTTGGCACAAGGTACTTTATGA 1988
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 TGCTGAACATGCTGTTTTACATTTACTATACTCGAGGTTTTGGCACAAGGTACTTTATGA 1971
Query 1989 CATTGGTGTTGTGTCTACGAAAGAACCATTCAAATGTGTCATAAATCAAGGAATCATCCT 2048
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 CATTGGTGTTGTGTCTACAAAAGAACCATTCAAATGTGTCATAAATCAAGGAATCATCCT 2031
Query 2049 TGGGGAAGTCCAATATACAGCTTGGAAAGATCAAGAAGGAAATTATGTATCTGCAGATAC 2108
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2032 TGGGGAAGTCCAATATACAGCTTGGAAAGATCAAGAAGGAAATTATGTATCTGCAGATAA 2091
Query 2109 TGAAGAACGGTTAAATGAACATCAACAAGTGACAATCCCGGAAGAAAAAGTTATCAAGTC 2168
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2092 TGAAGAACGGTTAAATGAACATCAACAAGTGACAATCCCGGAAGAAAAAGTTATGAAGTC 2151
Query 2169 CGGAGATCATTTTGTTCTGAAGGAGGATCCTAGCATTCGTCTGATTCCACGCGTTTATAA 2228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2152 CGGAGATCATTTTGTTCTGAAGGAGGATCCTAGCATTCGTCTGATTCCACGCGTTTATAA 2211
Query 2229 AATGAGCAAAAGTAGAGGAAATGTCGTAAATCCTGATGATGTTGTATTAGAGTATGGTGC 2288
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 2212 AATGAGCAAAAGTAGAGGAAATGTCGTAAATCCTGATGATGTTGTGTTAGAGCATGGTGC 2271
Query 2289 AGATTCTCTACGTTTGTATGAGATGTTCATGGGACCATTTAGGGACTCAAAAACTTGGAA 2348
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2272 AGATTCTCTACGTCTCTATGAGATGTTCATGGGACCATTTAGGGACTCAAAAACTTGGAA 2331
Query 2349 CACGAGTGGGATTGAAGGTGTGCATCGTTTCTTGGCAAGAACTTGGAGACTAGTCATTGG 2408
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2332 CACGAGTGGGATTGAAGGTGTGCATCGTTTCTTGGCAAGAACATGGAGACTAGTCATCGG 2391
Query 2409 TTTGCCTCAGTCTGATGGTTCTTTCAAAGATGGAACCTTAGTAACTGATGACGAACCAAC 2468
||||||||| || || ||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 2392 TTTGCCTCAATCCGACGGTTCTTTCAAAGATGGAACCATAGTGACTGATGATGAACCAAC 2451
Query 2469 CCTTGAACAACTCCGAACTCTTCATAAATGCATTGCAAAGGTGACAGAGGAAATCGAGAG 2528
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 2452 CCTTGAACAACTCCGAACTCTTCATAAATGCATAGCTAAGGTGACAGAGGAAATTGAGAG 2511
Query 2529 TACACGATTCAACACGGGAATTTCAGGGATGATGGAGTTTGTTAATGCGGCATATAAGTG 2588
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2512 TACGCGATTCAACACGGGAATTTCAGGGATGATGGAGTTTGTTAATGCGGCATATAAGTG 2571
Query 2589 GAATAATCAACCTAGAGGAATCATTGAGCCTTTTGTTCTTTTGCTCTCACCTTACGCGCC 2648
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2572 GAATAATCAACCTAGAAGAATCATTGAGCCTTTTGTTCTTTTGCTCTCACCTTACGCACC 2631
Query 2649 TCACATGGCTGAAGAGCTTTGGTCGCGGTTAGGCCATCCAAATTCTCTGGCCTATGAAAG 2708
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2632 TCACATGGCTGAAGAGCTTTGGTCACGGTTAGGCCATCCGAATTCTCTGGCCTATGAAAG 2691
Query 2709 CTTCCCTAAGGCAAACCCGGATTACTTAAAGAACACAACTATTGTTCTTCCAGTTCAGAT 2768
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2692 GTTCCCTAAGGCAAACCCAGATTACTTAAAGAACACAACTATTGTTCTTCCAGTTCAGAT 2751
Query 2769 AAACGGCAAGACAAGAGGCACCATAGAGGTTGAAGAAGGATGCTCTGAAGATGATGCTTT 2828
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2752 AAACGGCAAAACAAGAGGCACCATAGAGGTTGAAGAAGGATGTTCTGAAGATGATGCTTT 2811
Query 2829 TGTTCTAGCTTCACAGGACGACAAACTCAGGAAATATCTAGATGGACAATCAATCAAGAA 2888
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2812 TGTTCTAGCTTTACAGGACGAGAAACTCAGGAAATATCTAGATGGACAATCAATCAAGAA 2871
Query 2889 GCGAATCTATGTGCCTGGGAAGATCCTCAACGTTATCCTAGACCGGACTAATGTCAAGGT 2948
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2872 GCGAATCTATGTGCCTGGGAAGATCCTCAACGTTATCCTAGATCGGACTAATGTCAAGGT 2931
Query 2949 CACTACAAAGTAGGATTTAGAAAGAAGAAA---CAATTACAAAACCTGTCAAATGAACAA 3005
| | |||||||||||||||||||||| ||| |||||||| ||||||||||||||||||
Sbjct 2932 CGCCACAAAGTAGGATTTAGAAAGAAAAAAAAACAATTACAGAACCTGTCAAATGAACAA 2991
Query 3006 AATTT-TATCTCTATTGAG-AGTTTCCATTATATAGAAAAAGATTCTTTTAGAAGCAAAA 3063
||||| | |||||||||| |||||||||||||||||||||||||||| ||| |||||
Sbjct 2992 AATTTATTTCTCTATTGAATAGTTTCCATTATATAGAAAAAGATTCTTCTAG---CAAAA 3048
Query 3064 GATCTGTTCTTAGAT 3078
|||||||||||||||
Sbjct 3049 GATCTGTTCTTAGAT 3063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116365698475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5