BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G04450.1 Length=1588 Score E Sequences producing significant alignments: (Bits) Value Ahg327396 jgi|Araly1|327396|fgenesh1_pm.C_scaffold_6002616 2423 0.0 Ahg329411 jgi|Araly1|329411|fgenesh1_pm.C_scaffold_7001638 651 0.0 > Ahg327396 jgi|Araly1|327396|fgenesh1_pm.C_scaffold_6002616 Length=1590 Score = 2423 bits (1312), Expect = 0.0 Identities = 1501/1593 (94%), Gaps = 9/1593 (1%) Strand=Plus/Plus Query 1 ATGTTTCGTTTTCCGGTAAGTCTTGGAGGAGGTCCACGTGAGAAT-CTGAAGCCATCAGA 59 ||||||||||||||||||||||||||||||||||||||||| ||| | |||||| | || Sbjct 1 ATGTTTCGTTTTCCGGTAAGTCTTGGAGGAGGTCCACGTGACAATAC-GAAGCCGTTGGA 59 Query 60 TGAGCAGCATCAACGTGCGGTGGTGAATGAGGTTGACTTTTTCCGATCAGCGGAGAAGAG 119 |||||||||||| || ||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 60 TGAGCAGCATCATCGGGCGGTGGTGGATGAGGTTGACTTTTTCCGATCGGCGGAGAAGAG 119 Query 120 AGATAGGGTTTCACGTGAAGAACAAAACATTATCGCCG---ATGAGACTCATAGGGTTCA 176 |||||||||||||||||| || ||| | || ||||||| ||||||||||||||||||| Sbjct 120 AGATAGGGTTTCACGTGATGATCAAGATATGATCGCCGATCATGAGACTCATAGGGTTCA 179 Query 177 TGTCAAAAGGGAGAATTCACGTGTTGATGATCATGACGATCGTTCTACTGATCACATCAA 236 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| Sbjct 180 TGTCAAAAGGGAGAATTCACGTGTTGATGATCATGAAGATCGTTCTACGGATCATATCAA 239 Query 237 TATTGGACTTAATCTTCTCACTGCGAATACGGGAAGCGACGAGTCAATGGTGGATGATGG 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TATTGGACTTAATCTTCTCACTGCGAATACGGGAAGCGACGAGTCAATGGTGGATGATGG 299 Query 297 ATTGTCTGTGGATATGGAAGAGAAACGTACAAAGTGTGAGAATGCACAACTTCGCGAAGA 356 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 300 ATTGTCTGTGGATATGGAAGAGAAACGTACAAAGTGTGAGAATGCGCAACTTCGAGAAGA 359 Query 357 GCTAAAGAAGGCGAGTGAAGATAATCAAAGACTAAA-GCAAATGCTAAGTCAAACAACCA 415 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 360 GCTAAAGAAGGCGAGTGAAGATAATCAAAGACTAAAAG-AAATGCTAAGTCAAACAACCA 418 Query 416 ACAACTTCAATTCCTTGCAGATGCAACTTGTTGCTGTCATGAGGCAACAAGAAGATCATC 475 ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 419 ACAGCTTCAATTCCTTGCAGATGCAACTTGTTACTGTCATGAGGCAACAAGAAGATCATC 478 Query 476 ATCACCTAGCTACGACCGAGAACAATGACAATGTAAAGAACCGACATGAAGTGCCTGAAA 535 ||||||| ||||| || || ||||| ||||| | | ||||||||||||||||||||||| Sbjct 479 ATCACCTGGCTACAACTGAAAACAAAGACAACGCCACGAACCGACATGAAGTGCCTGAAA 538 Query 536 TGGTTCC-AAGACAGTTCATCGATTTGGGACCGCATTCTGACGAAGTGTCGTCCGAGGAG 594 ||||||| || |||||||||||||||||||||||| || || |||||||| ||||||||| Sbjct 539 TGGTTCCGAA-ACAGTTCATCGATTTGGGACCGCAGTCAGATGAAGTGTCATCCGAGGAG 597 Query 595 AGGACGACGGTTCGGTCGGGATCTCCTCCCTCGCTTCTAGAGAAATCTAGCTCACGTCAA 654 ||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||| Sbjct 598 AGGACGACGGTTCGGTCAGGATCTCCTCCATCGCTTCTAGAGAAATCTAGCTTACGTCAA 657 Query 655 AACGGAAAGAGAGTGCTTGTAAGAGAAGAAAGCCCGGAAACCGAATCCAACGGCTGGAGA 714 |||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 658 AACGGAAAGAGACTGCTTGTAAGAGAAGAAAGCCCAGAAACCGAATCCAACAGCTGGAGA 717 Query 715 AACCCTAACAAAGTTCCTAAACACCATGCATCATCCAGCATTTGCGGTGGCAATGGCAGT 774 |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| Sbjct 718 AACCCTAACAAAGTTCCTAAACACCACGCATCCTCCAGCAATTGCGGTGGCAATGGCAGT 777 Query 775 GAAAATGCAAGTAGCAAGGTCATTGAGCAAGCGGCCGCCGAAGCCACCATGCGTAAAGCC 834 ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| Sbjct 778 GAAAATGCAAGTAGCAAGGTCATCGAGCAAGCGGCTGCGGAAGCCACCATGCGTAAAGCC 837 Query 835 CGTGTCTCGGTTCGTGCTCGATCCGAAGCTCCCATGTTAAGCGATGGATGTCAATGGAGA 894 ||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 838 CGTGTTTCGGTTCGTGCTCGATCCGAAGCTAACATGCTAAGCGATGGATGTCAATGGAGA 897 Query 895 AAATACGGACAAAAAATGGCGAAAGGAAACCCGTGCCCTCGAGCTTATTACCGTTGCACA 954 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 AAATACGGGCAGAAAATGGCGAAAGGAAACCCGTGCCCTCGAGCTTATTACCGTTGCACA 957 Query 955 ATGGCTGTTGGATGTCCTGTTCGCAAGCAAGTGCAACGTTGCGCGGAAGATAGAACCATT 1014 ||||| |||||||| || |||||||||||||||||||||||||||||||| ||||||||| Sbjct 958 ATGGCCGTTGGATGCCCCGTTCGCAAGCAAGTGCAACGTTGCGCGGAAGACAGAACCATT 1017 Query 1015 CTCATAACAACCTACGAAGGAAACCATAACCATCCATTACCTCCTGCGGCTATGAACATG 1074 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1018 CTCATAACAACCTACGAAGGAAACCATAACCATCCATTACCTCCCGCGGCTATGAACATG 1077 Query 1075 GCTTCAACTACAACAGCAGCCGCAAGCATGCTTCTCTCAGGCTCCACCATGTCGAACCAA 1134 |||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 1078 GCTTCAACCACAACCGCAGCCGCAAGCATGCTCCTCTCAGGCTCCACAATGTCGAACCAA 1137 Query 1135 GACGGTTTAATGAACCCAACAAATCTCTTGGCTCGAACCATATTACCGTGTTCCTCAAGC 1194 || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 1138 GATGGTTTAATGAACCCAACAAATCTCTTGGCCCGAACCATCTTACCGTGTTCCTCAAGC 1197 Query 1195 ATGGCTACTATCTCAGCCTCTGCACCATTCCCAACCATTACATTAGACCTCACAGAGTCA 1254 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1198 ATGGCCACTATCTCAGCCTCTGCACCATTCCCAACCATTACATTAGACCTCACAGACTCA 1257 Query 1255 CCCAACGGGAACAATCCAACCAATAACCCGCTGATGCAATTCTCTCAACGGTCTGGTTTG 1314 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1258 TCCAACGGTAACAATCCAACTAATAACCCGCTGATGCAATTCTCTCAACGGTCTGGTTTC 1317 Query 1315 GTGGAGTTGAACCAATCGGTTTTGCCTCATATGATGGGTCAGGCTTTGTACTACAACCAA 1374 | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 GCGGAGTTGAATCAATCGGTTTTGCCTCATATGATGGGTCAGGCTTTGTACTACAACCAA 1377 Query 1375 CAGTCTAAGTTTTCGGGTTTACATATGCCGTCTCAGCCGCTAAACGCTGGTGAGAGTGTT 1434 ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct 1378 CAGTCTAAGTTCTCGGGTTTACATATGCCGTCTCAGCCTCTAAACGCTGGCGAGAGCGTT 1437 Query 1435 AGCGCCGCTACTGCCGCAATCGCCTCCAATCCCAACTTTGCCGCGGCTCTAGCTGCAGCC 1494 ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1438 AGCGCCGCTACTGCCGCCATCGCCTCCAACCCCAACTTTGCAGCGGCTCTAGCTGCAGCC 1497 Query 1495 ATAACTTCGATTATCAACGGTTCGAACAATCAGCAGAATGGGAACAACAATAACAGTAAT 1554 |||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 1498 ATAACTTCTATTATCAACGGTTCGAATACTCAGCAGAATGGGAACAACAATAACAGTAAT 1557 Query 1555 GTTACAACGAGCAACGTTGACAATAGGCAATAA 1587 || || ||||||||||||||||||||||||||| Sbjct 1558 GTCACCACGAGCAACGTTGACAATAGGCAATAA 1590 > Ahg329411 jgi|Araly1|329411|fgenesh1_pm.C_scaffold_7001638 Length=1617 Score = 651 bits (352), Expect = 0.0 Identities = 831/1052 (79%), Gaps = 74/1052 (7%) Strand=Plus/Plus Query 576 CGAAGTGTCGTCCGAGGAGAGGACGACGGTTCGGTCGGGATCTCCTCCCTCGCTTCTAGA 635 |||||| || || || |||||||| |||||||| ||||| |||||||| ||||||||||| Sbjct 600 CGAAGTATCATCTGAAGAGAGGACAACGGTTCGTTCGGGTTCTCCTCCTTCGCTTCTAGA 659 Query 636 GAA-AT-CTAGCTCACGTCAAAACGGAAAGAGAG-TGCTTGTAAGAGAAGAAAGC-C--C 689 || | | | | | || | ||||||||||| | |||||| ||||||||||||| | Sbjct 660 -AAGTTCCAATC-CCCGAGAGAACGGAAAGAG-GTTGCTTGGAAGAGAAGAAAGCTCAGA 716 Query 690 GGAAACCGAATCCAACGGCTGGAGAAACCCTAACAAAGTTCCTAAACACCATGCATCATC 749 |||| |||| || |||| |||| |||||||||||||||| || ||||| || |||| || Sbjct 717 GGAATCCGAGTCTAACGCCTGGGGAAACCCTAACAAAGTCCCCAAACATAATCCATCCTC 776 Query 750 CAGCATTTGCGGTGGCAATGGCAGTGAAAATGCAAGTAGCAAGGTCATTGAGCAAG-CGG 808 |||| | ||||||| | || | | || | || || ||||| | || ||| Sbjct 777 TAGCA---AC---AGCAATGG-A---AACA-G-AAACGGAAATGTTATTGATC-AGTCGG 823 Query 809 CCGCCGAAGCCACCATGCGTAAAGCCCGTGTCTCGGTTCGTGCTCGATCCGAAGCTCCCA 868 |||| |||||||||||||| |||||||||||||| |||||||| ||||| |||||| | | Sbjct 824 CCGCAGAAGCCACCATGCGGAAAGCCCGTGTCTCAGTTCGTGCCCGATCTGAAGCTGCGA 883 Query 869 TGTTAAGCGATGGATGTCAATGGAGAAAATACGGACAAAAAATGGCGAAAGGAAACCCGT 928 || ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 884 TGATAAGCGATGGATGTCAATGGAGAAAGTACGGACAAAAAATGGCTAAAGGAAACCCGT 943 Query 929 GCCCTCGAGCTTATTACCGTTGCACAATGGCTGTTGGATGTCCTGTTCGCAAGCAAGTGC 988 | || ||||||||||| || ||||||||||| | |||||||||||||||||||||||||| Sbjct 944 GTCCGCGAGCTTATTATCGCTGCACAATGGCCGGTGGATGTCCTGTTCGCAAGCAAGTGC 1003 Query 989 AACGTTGCGCGGAAGATAGAACCATTCTCATAACAACCTACGAAGGAAACCATAACCATC 1048 |||||||||| ||||| ||| | ||||||||||| ||||||||||||||||| ||||||| Sbjct 1004 AACGTTGCGCAGAAGACAGATCTATTCTCATAACCACCTACGAAGGAAACCACAACCATC 1063 Query 1049 CATTACCTCCTGCGGCTATGAACATGGCTTCAACTACAACAGCAGCCGCAAGCATGCTTC 1108 || | || || || |||||| |||||| ||||| || || ||||||||||||||||| | Sbjct 1064 CACTCCCACCAGCCGCTATGGCCATGGCCTCAACAACCACCGCAGCCGCAAGCATGCTCC 1123 Query 1109 TCTCAGGCTCCACCATGTCGAACCAAGACGGTTTAATGAACCCAACAAATCTCTTGGCTC 1168 |||| ||||| | ||||||| ||||||||||||||||||||||||||| ||||| |||| Sbjct 1124 TCTCGGGCTC-A--ATGTCGAGCCAAGACGGTTTAATGAACCCAACAAACCTCTTAGCTC 1180 Query 1169 GAACCATATTACCGTGTTCCTCAAGCATGGCTACTATCTCAGCCTCTGCACCATTCCCAA 1228 || |||| || || || |||||||||||||| || ||||||||||| ||||||||||||| Sbjct 1181 GAGCCATCTTGCCTTGCTCCTCAAGCATGGCCACAATCTCAGCCTCCGCACCATTCCCAA 1240 Query 1229 CCATTACATTAGACCTCAC-AGAGTCACCCAACGGGAACAATCC-AA-----CCA--A-T 1278 |||| ||||| |||||||| | | ||||||||||| ||||| || || ||| | | Sbjct 1241 CCATCACATTGGACCTCACCA-ATTCACCCAACGGCAACAACCCTAATATGACCACTAAT 1299 Query 1279 AACCCGCTGATGCAATTCTCTCAACGGTCTGGTTTGGTGGAGTTGAACCAATCGGTTTTG 1338 |||||| ||||||| ||| |||||||| ||||||| | | || |||||||| Sbjct 1300 AACCCGTTGATGCAGTTCGCTCAACGGCCTGGTTTC----A----ACCCGG-CGGTTTTG 1350 Query 1339 CCTCATA-TGATGGGTCAGGCTTTGTACTACAACCAACA---GTCTAAGTTTTCGGGTTT 1394 ||||| | || | || || || ||| || |||||||| ||| |||||||| ||||| Sbjct 1351 CCTCA-AGTGGTCGGCCAAACTATGTTTTATAACCAACAACAGTCCAAGTTTTCTGGTTT 1409 Query 1395 ACA-TATGCCGTCTCAGCCGCTA-A-A-C--G-C---T-----GGTG----AGAGTGTTA 1435 ||| | | ||| ||||||| || | | | | | | |||| |||| || | Sbjct 1410 ACAGT-TACCGGCTCAGCCACTGCAGATCCCGACCACTTCCTCGGTGGCCGAGAGCGTCA 1468 Query 1436 GCGCCGCTACTGCCGCAATCGCCTCCAATCCCAACTTTGCCGCGGCTCTAGCTGCAGCCA 1495 | || || | ||| || || || ||| |||| |||||||| ||||||||||| ||||| | Sbjct 1469 GTGCTGCCAGTGCAGCGATTGCGTCCGATCCAAACTTTGCGGCGGCTCTAGCGGCAGCAA 1528 Query 1496 TAACTTCGATTATCAACGGTTCGAACAATCAGCAGAATGGGAACAACAATAACAGTAATG 1555 | || || ||||| |||||||| || ||| |||||| |||| ||||| | ||||| Sbjct 1529 TTACCTCCATTATGAACGGTTC---CAGTCATCAGAATAATAACACCAATAGTAATAATG 1585 Query 1556 TTACAACGAGCAACGTTGACAATAGGCAATAA 1587 | | || ||||||| ||||| |||||||||| Sbjct 1586 TGGCTACAAGCAACGGTGACACTAGGCAATAA 1617 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59496962690 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5