BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04570.1
Length=2089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943226 jgi|Araly1|943226|scaffold_603770.1 2531 0.0
Ahg895523 jgi|Araly1|895523|Al_scaffold_0006_3519 2113 0.0
Ahg913379 jgi|Araly1|913379|Al_scaffold_0001_3633 1934 0.0
Ahg895520 jgi|Araly1|895520|Al_scaffold_0006_3516 878 0.0
> Ahg943226 jgi|Araly1|943226|scaffold_603770.1
Length=1930
Score = 2531 bits (1370), Expect = 0.0
Identities = 1590/1696 (94%), Gaps = 16/1696 (1%)
Strand=Plus/Plus
Query 384 AACACACTAACAGATTGTCGAAGCCGTAGGGATTCGTTCATATGGGGAGGCAATGACGAT 443
||||||| |||||| ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 243 AACACACAAACAGAATGTCGAAGCCGCATGGATTCGTTCATATGGGGAGGCAATGACGAT 302
Query 444 GTAACTTGTCTTGTACGTTCCTCAAACCAGTCTACTTTTGGGAGCGTCCAGCTTAAACCT 503
|||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||
Sbjct 303 GTAACTTGTCTTGTACGTTCCTCAAACCAGTCCACTTTTGGGAACCTCCAGCTTAAACCT 362
Query 504 CCTGTTGTATGGCCAAGTCCAGATACTATAGAGTCATCTAAAAACATAACCCTTTTCAAA 563
||||||||||||||||||||||||||||| ||||||||||||||| | | |||||| ||
Sbjct 363 CCTGTTGTATGGCCAAGTCCAGATACTATCGAGTCATCTAAAAACTTGAGTCTTTTCGAA 422
Query 564 CAACAGTGGGAAGAAATGGTTAATCGGACCCT-AGAGGCTGCCACGA-AAGCTGAAGGTT 621
|||||||||||||||||||||||||||||||| | ||||||| || | |||||||| ||
Sbjct 423 CAACAGTGGGAAGAAATGGTTAATCGGACCCTCA-AGGCTGCGAC-AGAAGCTGAAACTT 480
Query 622 CCTCGGTGCTTAAGTACTATAAG-GCCGAAAAAG-CGGGTTTCACCGAGTTTCCAGATGT 679
||||||| ||||||||||| || |||||||||| |||| ||||| ||||||||||||||
Sbjct 481 CCTCGGTACTTAAGTACTA-CAGCGCCGAAAAAGCCGGG-TTCACGGAGTTTCCAGATGT 538
Query 680 TTACATGCTGATGCAATGCACACCCGACTTAAGTTCACGAGATTGCAAGCAATGTTTGGG 739
|||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||
Sbjct 539 TTACATGCTGATGCAATGCACACCCGACATAACTTCCCGAGATTGCAAGCAATGTTTGGG 598
Query 740 AGATTGCGTGATGTACTTTAGAAAAGACTATATGGGAAGAAAAGGAGGCATGGCTAGTCT 799
||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 599 AGATTCCGTGATGTATTTTAGAAAAGATTATATGGGAAGAAAAGGAGGCATGGCTAGTCT 658
Query 800 TCCAAGCTGTTATTTCAGGTGGGATCTATATTCTTTCCATAATGCTTTTGATAATGTAAC 859
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 659 TCCAAGCTGTTATTTCAGATGGGATCTATATGCTTTCCATAATGCTTTTGATAATGTAAC 718
Query 860 AAGAGTTCCTGCGCCTCCTCCTCGACCTCATG-CTCAGGAAAAGGAGAGCTGCATAACAG 918
||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 719 CAGAGTTCCTGCACCTCCTCCTCGACCTCA-GTCTCAGGAAAAGGAGAGCTGCATAACAG 777
Query 919 Ta-aaaaaaGGGAAAAGCATTGGGTATGGCGGAATTATCGCAATAGTTGTGGTGT-TTAC 976
| |||||||| ||||||||||||||||||||||||||||| ||| ||||||| | ||||
Sbjct 778 -AGAAAAAAGGAAAAAGCATTGGGTATGGCGGAATTATCGCGATAATTGTGGT-TCTTAC 835
Query 977 TTTCATTAATCTTTTGGTGTTTATTGGCTTTATCAAAGTCTATGCACGGAGGGGAAAATT 1036
||| || ||| ||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 836 TTTTATAAATATTTTGGTGTTTATTGGCTTCATCAAAGTCTATGCACGGAGGGGGAAATT 895
Query 1037 AAATAATGTTGGTAGTGCAGAATACTCTGATTCTGATGGTCAATTCATGTTACGGTTTGA 1096
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 896 AAATAATGTTGGGAGTGCAGAGTACTCTGATTCTGATGGTCAATTCATGTTACGGTTTGA 955
Query 1097 TCTTGGTATGATCGTAATGGCAACTGATGACTTCTCCTCTGAAAATACGCTTGGCCAAGG 1156
||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 956 TCTTGGTATGATCTTAATGGCAACCGATGACTTCTCTTCTGAAAATACGCTTGGCCAAGG 1015
Query 1157 TGGATTTGGTACGGTTTATAAGGGGACATTCCCAAACGGGCAAGAGGTAGCGGTCAAGAG 1216
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1016 TGGATTTGGTACGGTCTATAAGGGGACATTCCCAAACGGGCAAGAAGTAGCGGTCAAGAG 1075
Query 1217 ACTAACAAAAGGATCAGGACAAGGAGATATGGAGTTTAAGAATGAGGTTTCACTCTTGAC 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 ACTAACAAAAGGATCAGGACAAGGAGATATGGAGTTTAAGAATGAGGTTTCACTCTTGAC 1135
Query 1277 AAGACTCCAACATAAGAATCTTGTTAAGCTTCTTGGGTTCTGTAATGAGGGAGATGAAGA 1336
|||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1136 AAGACTCCAACATAGGAATCTTGTTAAGCTTCATGGGTTCTGTAATGAAGGAGATGAAGA 1195
Query 1337 GATTCTTGTCTACGAGTTTGTCCCCAACTCAAGTCTTGATCACTTTATCTTTGATGAAGA 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GATTCTTGTCTACGAGTTTGTCCCCAACTCAAGTCTTGATCACTTTATCTTTGATGAAGA 1255
Query 1397 TAAGCGTTCTCTTCTTACATGGGAGGTGAGGTTCAGAATTATAGAAGGCATTGCTCGAGG 1456
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1256 CAAGCGTTCTCTTCTTACATGGGAGGTGAGGTTCAGAATTATAGAAGGCATTGCTAAAGG 1315
Query 1457 TCTTCTCTATCTCCATGAAGATTCTCAGCTGAAGATTATTCACAGAGACTTGAAGGCAAG 1516
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1316 TCTTCTCTATCTCCATGAAGATTCTCAGATGAAGATTATTCATAGAGACTTGAAGGCAAG 1375
Query 1517 CAACATACTTTTAGACGCTGAGATGAACCCTAAAGTTGCGGATTTCGGGACTGCGAGGTT 1576
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| |
Sbjct 1376 CAACATACTTTTAGACGCAGAGATGAACCCTAAAGTTGCAGATTTCGGGACTGCTAGGCT 1435
Query 1577 GTTCGACTCCGACGAGACTCGAGCTGAAACAAAAAGAATAGCTGGAACCCGTGGATATAT 1636
||||||| |||| ||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1436 GTTCGACACCGATGAGACTCGAGCTGAAACAAGAAGAATAGCTGGAACCCGCGGATATAT 1495
Query 1637 GGCTCCTGAGTACT-TGAATCATGGACAAATCTCAGCTAAATCTGACGTTTATAGCTTCG 1695
|||||| || || | ||| ||| || |||||||| ||||||||||||||||||||||| |
Sbjct 1496 GGCTCCCGAATA-TCTGAGTCACGGGCAAATCTCGGCTAAATCTGACGTTTATAGCTTTG 1554
Query 1696 GTGTTATGCTTCTAGAGATGATTAGTGGTGAAAGAAACAATAGCTTCGAAGGAGAAGGAC 1755
|||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||
Sbjct 1555 GTGTTATGCTTCTAGAGATGATAAGTGGTGGAAGAAACAATAGCTTTGAAGGAGAAGGAC 1614
Query 1756 TTGCAGCTTTTGCATGGAAAAGATGGGTTGAAGGAAAGCCTGAGATTATAATTGATCCGT 1815
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1615 TTGCAGCTTTTACATGGAAGAGATGGGTTGAAGGAAAGCCTGAGATTATAATTGATCCTT 1674
Query 1816 TCTTAATAGAGAATCCAAGAAATGAGATCATCAAGTTGATCCAAATTGGTTTGTTGTGTG 1875
| || ||||| ||||||||||| |||||| ||||||||||||| ||||| ||||||||||
Sbjct 1675 TATTGATAGAAAATCCAAGAAACGAGATCGTCAAGTTGATCCAGATTGGATTGTTGTGTG 1734
Query 1876 TTCAAGAGAATTCAACAAAGAGACCAACCATGAGCTCTGTAATAATTTGGCTTGGCAGTG 1935
||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1735 TTCAAGAGAATGCAGCAAAGAGACCAAACATGAGCTCTGTAATAATTTGGCTTGGCAGTG 1794
Query 1936 AGACTATCATCATTCCTTTACCTAAAGCTCCTGCTTTCACTTGGATTCGATCCCAATCTG 1995
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1795 AGACTATCATCATTCCTTTACCTAAAGCTCCTGCTTTCACTTGGAGTCGATCCCAATCTG 1854
Query 1996 AAAGTGGTGCAATGTCATTGAGCGACGATGTCTTCACGGAGTTGAGTTGTCGTTGAGATA 2055
||||||||||||||||| ||||||||||||||||||| |||||||||||||||| | | |
Sbjct 1855 AAAGTGGTGCAATGTCAATGAGCGACGATGTCTTCACAGAGTTGAGTTGTCGTTAAAAGA 1914
Query 2056 TACATCAGTTAATCAA 2071
|| |||||||||||||
Sbjct 1915 TAAATCAGTTAATCAA 1930
Score = 268 bits (145), Expect = 9e-71
Identities = 193/215 (90%), Gaps = 7/215 (3%)
Strand=Plus/Plus
Query 117 CTCTCTTCTTCTCTTCTACTTGTCCTTCAAACACTCCATGTTGTTAACGCGGTCAAATGT 176
|||| || ||||||||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 33 CTCTGTTTTTCTCTTCTACTTGTCCTTCAAACACTCCATGTTGTTGACGCCGTCAAGTGT 92
Query 177 TTCGGAAACTCCTTCAACGGTAACAGCAGCACCTT-CGCTCAGAATCGCCAGAAACTGTT 235
||||||| ||||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct 93 TTCGGAAGCTCCTTCAACGTTAACAGCAG----TTACGCTCAGAATCGCCAGAAACTGTT 148
Query 236 CCCTACTCTTGCTGACAAAGTCATCA-TCAACGACGGATTCTACAACGCTTCACTCGGCC 294
||||||||||||||| |||||| ||| | ||| |||||||||||||||||||||||||||
Sbjct 149 CCCTACTCTTGCTGATAAAGTCGTCACT-AACAACGGATTCTACAACGCTTCACTCGGCC 207
Query 295 AAGATCCCGACAAAGTTTACGCTCTTGTCAGCTGC 329
|| ||||| ||| ||| ||||||||||||| ||||
Sbjct 208 AATATCCCAACAGAGTATACGCTCTTGTCATCTGC 242
> Ahg895523 jgi|Araly1|895523|Al_scaffold_0006_3519
Length=1980
Score = 2113 bits (1144), Expect = 0.0
Identities = 1743/2019 (86%), Gaps = 93/2019 (5%)
Strand=Plus/Plus
Query 87 ATGGGAAAATGCTCTGCTTTGATGATATTCCTCTCTTCTTCTCTTCTACTTGTCCTTCAA 146
||||| |||| ||||| ||||||||| || || |||||| |||||| ||||||||||||
Sbjct 1 ATGGGGAAATACTCTGTTTTGATGATCTTAATCGCTTCTTTTCTTCTTCTTGTCCTTCAA 60
Query 147 ACAC-TCCATGTTGTTAACGCGGTCAAATGTTTCGGAAACTCCTTCAACGGTAACAGCAG 205
| || || | |||||||||| ||| |||| ||||| || |||||||| |||||||||
Sbjct 61 A-ACGTCGAAATTGTTAACGCCGTCGGATGTACCGGAAGCTTCTTCAACGTTAACAGCAG 119
Query 206 CACCTTCGCTCAGAATCGCCAG-AAACTGTTCCCTACTCTTGCTGACAAAGTCATCATCA 264
|| |||||||||||||| | |||| ||| ||||||||||||| |||||| ||| ||
Sbjct 120 ---CTACGCTCAGAATCGCC-GTGAACTCTTCTCTACTCTTGCTGATAAAGTCGTCACCA 175
Query 265 ACGACGGATTCTACAACGCTTCACTCGGCCAAGA-TCCCGACAAAGTTTACGCTCTTGTC 323
||| || |||||||| ||||||||||| ||| | |||| ||| |||| ||||| ||| |
Sbjct 176 ACGGTGGCTTCTACAATGCTTCACTCGG-CAAAAGTCCCAACAGAGTTCACGCTGTTGCC 234
Query 324 AGCTGCGCAAGAGGCTACGACCAAGACGCTTGTTA-CAATTGTGTC-CAA-T-C-ATTGA 378
||||| |||||| ||||| ||| | ||||| || || ||||||| || | | |||
Sbjct 235 CTCTGCGGAAGAGGATACGAGCAACAAGCTTG-TATCAGTTGTGTCGAAAGTGCGATT-- 291
Query 379 CTCAG-A-AC--AC-ACTAAC-AGATTGTCGAAGCCGTAG-GGATTCGTTCATATGGG-- 429
| | | || || || ||| || ||||| || ||| | |||||| |||| ||||
Sbjct 292 CGGGGTATACTAACGAC-AACAAG-TTGTCTAAACCG-CGTGGATTCATTCACGTGGGAC 348
Query 430 ---GA-G-GCAATGACGATGTAACTTGTCTTGTACGTTCCTCAAACCAGTCTACTTTTGG 484
|| | | || ||| | || ||||||||||| || |||||||||| |||||||||||
Sbjct 349 AAAGACGAGGAA-GACAACGTTTCTTGTCTTGTAAGTACCTCAAACCACTCTACTTTTGG 407
Query 485 GAGCGTCCAGCTTAAACCTCCTGTT-GTATGGCC-AAGTCCAGATACTATAGAGTCATCT 542
|| | || |||||| |||| ||||| | || || ||||||| ||| ||| ||| ||||
Sbjct 408 GAACCTCGAGCTTAGACCTTCTGTTAG-AT-ACCAAAGTCCAAATAGTATCGAGCCATCG 465
Query 543 AAAAACATAACCCTTTTCAAACAACAGTGGGAA-GAAATGGTTAATCGGACCCT-AGAGG 600
|||||||| |||||||| ||||| | | |||| | ||||| |||||||||||| | |||
Sbjct 466 AAAAACATGACCCTTTTTGAACAAGAAT-GGAATGCAATGGCTAATCGGACCCTCA-AGG 523
Query 601 CTGCCACGA-AAGCTGAAGGTTCCTCGGTGCTTAAGTACTATAAG-GCCGAAAAAG-CGG 657
||| || | |||||||| ||||||||| |||||||||||| || |||||||||| ||
Sbjct 524 CTG-CAAAAGAAGCTGAAACTTCCTCGGTACTTAAGTACTAT-AGTGCCGAAAAAGCCGA 581
Query 658 GTTTCACCGAGTTTCCAGATGTTTACATGCTGATGCAATGCACACCCGACTTAAGTTCAC 717
| ||||| ||||||||| |||||||||||||||||||||||||||| ||| ||| ||| |
Sbjct 582 G-TTCACAGAGTTTCCAAATGTTTACATGCTGATGCAATGCACACCAGACATAACTTCCC 640
Query 718 GAGATTGCAAGCA-ATGT-TTGGGAGATTGCGTGATGTACTTTAGAAAAG-ACTA--TAT 772
|||||||||| | |||| || ||||| || |||| | |||| |||| || | | |
Sbjct 641 AAGATTGCAAG-ACATGTCTT-GGAGAATGTGTGACG--CTTT-TTAAAGAAC-AGGTTT 694
Query 773 -GGGAAGAA-AAGGAGGC-ATGG-CTAGTCTTCCAAGCTGTTATTTCAGGTGGGATCTAT 828
||||| || |||||||| | || || || ||| ||||||| |||||||||||||||||
Sbjct 695 GGGGAA-AACAAGGAGGCGA-GGTTTA-TCGTCCGAGCTGTTTTTTCAGGTGGGATCTAT 751
Query 829 ATTCTTTCCATAATGCTTTTGATAATGTAACAAGAGTTCCTGCGCCTCCTCCTCGACCTC 888
|| |||||||| ||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 752 ATGCTTTCCATGGTGCTTTTGATAATGTAACAAGAGTTTCTGCG---CCTCCTCGACCTC 808
Query 889 ATGCTCA-GGAAAAGGAGAGCTGC-ATAACAGTaaaa-aaaGGGAA-AAGCATTGGGTAT 944
| ||||| |||||| ||||||| | ||||||| |||| ||| |||| ||||||||| |||
Sbjct 809 AAGCTCAGGGAAAA-GAGAGCT-CTATAACAG-AAAAGAAA-GGAAGAAGCATTGGATAT 864
Query 945 GGCGGAATTATCGCAATAGTTGTGGTGT-TTACTTTCATTAATCTTTTGGTGTTTATTGG 1003
| ||||||||||| ||| ||||||| | |||||||||||||||||||||||||||||||
Sbjct 865 CGTGGAATTATCGCGATAATTGTGGT-TCTTACTTTCATTAATCTTTTGGTGTTTATTGG 923
Query 1004 CTTTATCAAAGTCTATGCACGGAGGGGAA-AAT--T------AAAT-AATGTTGGTAGTG 1053
|| |||||||||||||| ||||| || || ||| | |||| |||||||| ||||
Sbjct 924 CTATATCAAAGTCTATGGACGGA-GGAAAGAATCATACAACAAAATCAATGTTGGGAGTG 982
Query 1054 CAGAATACTCTGATTCTGATGGTCAATTCATGTTACGGTTTGATCTTGGTATGATCGTAA 1113
|||| ||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||
Sbjct 983 CAGAGTACTCTGATTCTGATGGTCAATTTATGTTAAGGTTTGATATTGGTATGATCTTAA 1042
Query 1114 TGGCAACTGATGACTTCTCCTCTGAAAATACGCTTGGCCAAGGTGGATTTGGTACGGTTT 1173
|||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 1043 TGGCAACTAATGACTTCTCGTCTGAAAACACGCTTGGCCAAGGTGGATTTGGTACGGTCT 1102
Query 1174 ATAAGGGGACATTCCCAAACGGGCAAGAGGTAGCGGTCAAGAGACTAACAAAAGGATCAG 1233
||||||||| ||| | ||||||||||||| ||||||| ||||||||||||||||| ||||
Sbjct 1103 ATAAGGGGAAATTACTAAACGGGCAAGAGATAGCGGTGAAGAGACTAACAAAAGGTTCAG 1162
Query 1234 GACAAGGAGATATGGAGTTTAAGAATGAGGTTTCACTCTTGACAAGACTCCAACATAAGA 1293
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1163 GACAAGGAGATATAGAGTTCAAGAATGAGGTTTCACTATTGACAAGACTCCAACATAGGA 1222
Query 1294 ATCTTGTTAAGCTTCTTGGGTTCTGTAATGAGGGAGATGAAGAGATTCTTGTCTACGAGT 1353
|||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1223 ATCTAGTTAAGCTTCTTGGGTTCTGTAATGACGGAGATGAACAGATTCTTGTCTACGAGT 1282
Query 1354 TTGTCCCCAACTCAAGTCTTGATCACTTTATCTTTGATGAAGATAAGCGTTCTCTTCTTA 1413
|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 1283 TTGTCCCCAACTCAAGTCTTGATCACTTTATCTTCGATGAAGAGAAGCGTTCACTTCTTA 1342
Query 1414 CATGGGAGGTGAGGTTCAGAATTATAGAAGGCATTGCTCGAGGTCTTCTCTATCTCCATG 1473
|||||||| |||| | ||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1343 CATGGGAGATGAGATGCAGAATTATAGAAGGCATTGCTCGAGGTCTTCTTTATCTTCATG 1402
Query 1474 AAGATTCTCAGCTGAAGATTATTCACAGAGACTTGAAGGCAAGCAACATACTTTTAGACG 1533
||||||||||||| |||||||||||| |||||||||||||||| ||||| |||||||| |
Sbjct 1403 AAGATTCTCAGCTAAAGATTATTCACCGAGACTTGAAGGCAAGTAACATCCTTTTAGATG 1462
Query 1534 CTGAGATGAACCCTAAAGTTGCGGATTTCGGGACTGCGAGGTTGTTCGACTCCGACGAGA 1593
| |||||||| ||||||||| | ||||| ||||| |||||||||||||||||||| ||||
Sbjct 1463 CAGAGATGAATCCTAAAGTTTCAGATTTTGGGACAGCGAGGTTGTTCGACTCCGATGAGA 1522
Query 1594 CTCGAGCTGAAACAAAAAGAATAGCTGGAACCCGTGGATATATGGCTCCTGAGTACTTGA 1653
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1523 CCCGAGCTGAAACAAAAAGAATAGCTGGAACCCGTGGATATATGGCTCCCGAGTACTTGA 1582
Query 1654 ATCATGGACAAATCTCAGCTAAATCTGACGTTTATAGCTTCGGTGTTATGCTTCTAGAGA 1713
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1583 ATCATGGGCAAATCTCAGCTAAATCTGACGTTTATAGCTTCGGTGTTATGCTTCTAGAGA 1642
Query 1714 TGATTAGTGGTGAAAGAAACAATAGCTTCGAAGGAGAAGGACTTGCAGCTTTTGCATGGA 1773
|||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1643 TGATAAATGGTGAAAGAAACAATAGCTTCGAAGGAGAAGGACTTGCAGCATTTGCATGGA 1702
Query 1774 AAAGATGGGTTGAAGGAAAGCCTGAGATTATAATTGATCCGTTCTTAATAGAGAATCCAA 1833
||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||
Sbjct 1703 AAAGATGGGTTGAAGGAAAGCCTGAGATTGTAATTGATCCTTTCTTGATAGAGAATCCAA 1762
Query 1834 GAAATGAGATCATCAAGTTGATCCAAATTGGTTTGTTGTGTGTTCAAGAGAATTCAACAA 1893
|||| |||||||| ||| |||| || ||||| ||||||||||||||||||||| ||||||
Sbjct 1763 GAAACGAGATCATAAAGCTGATTCATATTGGCTTGTTGTGTGTTCAAGAGAATCCAACAA 1822
Query 1894 AGAGACCAACCATGAGCTCTGTAATAATTTGGCTTGGCAGTGAGACTATCATCATTCCTT 1953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1823 AGAGACCAACCATGAGCTCTGTAATAATTTGGCTTGGCAGTGAGACTATCATCATTCCTT 1882
Query 1954 TACCTAAAGCTCCTGCTTTCACTTGGAT-TCGATCCCAATCTGAAAGTGGTGCAATGTCA 2012
||||||||||||||||||||||| ||| || |||||||||||||| |||| |||||||
Sbjct 1883 TACCTAAAGCTCCTGCTTTCACT-GGAAGTCAATCCCAATCTGAAAATGGTATAATGTCA 1941
Query 2013 TTGAGCGACGATGTCTTCACGGAGTTGAGTTGTCGTTGA 2051
||||||||||||||||||| ||||||||||||||||||
Sbjct 1942 ATGAGCGACGATGTCTTCACAGAGTTGAGTTGTCGTTGA 1980
> Ahg913379 jgi|Araly1|913379|Al_scaffold_0001_3633
Length=1965
Score = 1934 bits (1047), Expect = 0.0
Identities = 1700/2006 (85%), Gaps = 82/2006 (4%)
Strand=Plus/Plus
Query 87 ATGGGAAAATGCTCT-GCTTTGATGATATTCCTCTCTTCTTCTCTTCTACTTGTCCTTC- 144
||||| |||||| || ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1 ATGGGGAAATGC-CTAGCTTTGATGATCTTCCTCTCTTCTTCTCTTCTTTTTGTCCTTCA 59
Query 145 AAACACTCCATGTTGTTAACGCGGTCAAATGTTTCGGAAACTCCTTCAACGGTAACAGCA 204
|||| ||| | || |||||||| |||| |||| ||||| || |||||| ||||||||||
Sbjct 60 AAAC-CTCGAAGTCGTTAACGCAGTCAGGTGTTCCGGAAGCTTCTTCAAAGGTAACAGCA 118
Query 205 GCACCTTC-GCTCAGAATCGCCAGAAACTGTTCCCTACTCTTGCTGACAAAGTCATCATC 263
| || | || |||||||||| || || ||| ||||||||||| | |||||| ||| |
Sbjct 119 G---CTACAGC-GAGAATCGCCACAAGCTCTTCTCTACTCTTGCTAATAAAGTCGTCACC 174
Query 264 AACGACGGATTCTACAACGCTTCACTCGGCCAAGA-TCCCGACAAAGTTTACGCTCTTGT 322
|||| ||||||||||||||||||||||| || | |||| ||| |||||||||||||||
Sbjct 175 AACGGTGGATTCTACAACGCTTCACTCGG-TAAAAGTCCCAACACAGTTTACGCTCTTGT 233
Query 323 CAGCTGCGCAAGAGGCTACGACCAAGACGCTTGTTACAATTGTGTCCAATCATTGACTCA 382
| || |||||||| ||| | ||| | || |||| || ||||||| || | |||||||
Sbjct 234 CCTTTGTGCAAGAGGTTACCAGCAACAAGCGTGTTCCAGTTGTGTCGAAAAAGTGACTCA 293
Query 383 GAACACACTAA-CAGA-TTGTCGAAG-CCGTAGGGATTCGTTCATA-TGGG-----GA-G 432
| |||| || | || ||||| || || | |||| |||||| | |||| || |
Sbjct 294 GGGGACAC-AATC-GAGTTGTC-CAGATCGCATGGATACGTTCA-AGTGGGACAATGACG 349
Query 433 GC-AATGACGATGTAACTTGTCTTGTACGTTCCTCAAACCAGTCTACTTTTGGGAGCG-T 490
| || ||| |||| ||||||||||||||||| ||||| | || ||||| |||| || |
Sbjct 350 ACGAA-GACCATGTTTCTTGTCTTGTACGTTCCACAAACTACTCAACTTTAGGGA-CGCT 407
Query 491 CCAGCTTAAACCTCCTGTTGTATGGCCAAGTCCAGATACTATAGAGT-CATCTAAAAACA 549
||||||| |||||||||| ||| ||||||||| || |||||| | |||| | |||
Sbjct 408 CCAGCTTGGACCTCCTGTTATATTCCCAAGTCCACTTAGTATAGA-TCCATCCAGGGACA 466
Query 550 TAACCCTTTTCAAACAACAGTGGGAAGA-AATGGTTAATCGGACCCTAGAGGCTGCCACG 608
| |||||||| ||||||||| ||||| | || ||||||||||||||| |||||||||||
Sbjct 467 TGACCCTTTTTAAACAACAGCGGGAA-ACAACGGTTAATCGGACCCTTGAGGCTGCCACC 525
Query 609 AAAGCTGAAGGTTCCTCGGTGCTTAAGTACTATAAG-GCCGAAAAAG-CGGGTTTCACCG 666
||||||||| ||||||||| ||||||||||| || || | | ||| || | ||||| |
Sbjct 526 AAAGCTGAAAATTCCTCGGTAATTAAGTACTAT-AGTGCGGTACAAGCCGAG-TTCACGG 583
Query 667 AGTTTCCAGATGTTTACATGCTGATGCAATGCACACCCGACTTAAGTTCACGAGATTGCA 726
|||||||| |||||||||||||||||||||||||||| ||| || ||| ||||||||||
Sbjct 584 AGTTTCCAAATGTTTACATGCTGATGCAATGCACACCAGACATATCTTCCCGAGATTGCA 643
Query 727 AGCA-ATGTTTGGGAGATTGCGTGATGTACTTTAGAAAAGACTATAT-GGGAAGAAAAGG 784
|| | |||||||||||||||||||| ||| |||| |||| | | | | |||||| ||||
Sbjct 644 AG-AGATGTTTGGGAGATTGCGTGACGTATTTTACAAAACAGT-TTTGGGGAAGGCAAGG 701
Query 785 AGGCA-TGGCTAGTCTTCC-AAGCTGT-TATTTCAGGTGGGATCTATATTCTTTCCATAA 841
||| | || ||||| ||| || |||| | ||||||||||||||||||| | ||||||
Sbjct 702 AGG-AGAGGTTAGTCGTCCGAA-CTGTGT-TTTCAGGTGGGATCTATATGCGTTCCATGG 758
Query 842 TGCTTTTGATAATGTAACAAGAGTTCCTGCGCCTCCTCCTCGACCTCATGCTCAGGAAAA 901
|||||||||||||||||||||||||||| | | ||||||| | | || | |||
Sbjct 759 TGCTTTTGATAATGTAACAAGAGTTCCT--G-CACCTCCTC-A----A----CAAGTAAA 806
Query 902 GGAGAGCTGC-ATAACAGTaaaa-aaaGGGAA-AAGCATTGGGTATGGCGGAATTATCGC 958
|| ||| | | ||||||| |||| ||| |||| ||||||||| ||| | |||||| ||
Sbjct 807 GGGGAG-TTCTATAACAG-AAAAGAAA-GGAAGAAGCATTGGCTATAACAAAATTATTGC 863
Query 959 AATAGTTGTGGTGT-TTACTTTCATTAATCTTTTGGTGTTTATTGGCT-TTATCAAAGTC 1016
||| ||| ||| | ||||||||||||| ||||||||| |||||| | | || ||||||
Sbjct 864 GATAATTGCGGT-TCCTACTTTCATTAATATTTTGGTGTATATTGG-TCTCATAAAAGTC 921
Query 1017 TATGCACGGAGGGGAAAAT-----TA---AATA-ATGTTGGTAGTGCAGAATACTCTGAT 1067
||||| |||| |||||| | |||| |||||||||| ||||| |||||||||
Sbjct 922 TATGCTTGGAGAAGAAAATCAAACAACGGAATAGATGTTGGTAGGGCAGAGTACTCTGAT 981
Query 1068 TCTGATGGTCAATTCATGTTACGGTTTGATCTTGGTATGATCGTAATGGCAACTGATGAC 1127
|||||||| ||||| ||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 982 TCTGATGGACAATTTATGTTACGGTTTGATCTTGGTATGATCTTAGTGGCAACTAATGAC 1041
Query 1128 TTCTCCTCTGAAAATACGCTTGGCCAAGGTGGATTTGGTACGGTTTATAAGGGGACATTC 1187
|| || ||||| |||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 1042 TTTTCGTCTGAGAATACGCTTGGCCAGGGTGGATTTGGTACTGTCTATAAGGGGACATTA 1101
Query 1188 CCAAACGGGCAAGAGGTAGCGGTCAAGAGACTAACAAAAGGATCAGGACAAGGAGATATG 1247
| ||||||||||||| |||| || ||||||||||||| ||| || || ||||||||||||
Sbjct 1102 CTAAACGGGCAAGAGATAGCCGTGAAGAGACTAACAAGAGGTTCGGGGCAAGGAGATATG 1161
Query 1248 GAGTTTAAGAATGAGGTTTCACTCTTGACAAGACTCCAACATAAGAATCTTGTTAAGCTT 1307
|||||||||||||||||||| || ||||||||||||||||||| |||||| |||||||||
Sbjct 1162 GAGTTTAAGAATGAGGTTTCTCTATTGACAAGACTCCAACATAGGAATCTGGTTAAGCTT 1221
Query 1308 CTTGGGTTCTGTAATGAGGGAGATGAAGAGATTCTTGTCTACGAGTTTGTCCCCAACTCA 1367
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1222 CTTGGGTTCTGTAATGAAGGAGATGAAGAGATTCTTGTTTACGAGTTTGTCCCCAATTCA 1281
Query 1368 AGTCTTGATCACTTTATCTTTGATGAAGATAAGCGTTCTCTTCTTACATGGGAGGTGAGG 1427
|||||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||
Sbjct 1282 AGTCTTGATCACTTTATCTTCGATGAAGAGAAGCGTTCGCTTCTTACATGGGAGCTGAGA 1341
Query 1428 TTCAGAATTATAGAAGGCATTGCTCGAGGTCTTCTCTATCTCCATGAAGATTCTCAGCTG 1487
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1342 TGCAGAATTATAGAAGGCATTGCTCGAGGTCTTCTTTATCTCCATGAAGATTCTCAGCTG 1401
Query 1488 AAGATTATTCACAGAGACTTGAAGGCAAGCAACATACTTTTAGACGCTGAGATGAACCCT 1547
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1402 AAGATTATTCACCGAGACTTGAAGGCAAGCAACATTCTTTTAGACGCTGAGATGAACCCT 1461
Query 1548 AAAGTTGCGGA-TTTCGGGACTGCGAGGTTGTTCGACTCCGACGAGACTCGAGCTGAAAC 1606
|| ||||| || ||| ||||| ||||| |||||||| | || |||||||||||||||||
Sbjct 1462 AAGGTTGCCGACTTT-GGGACAGCGAGATTGTTCGAAGCTGATGAGACTCGAGCTGAAAC 1520
Query 1607 AAAAAGAATAGCTGGAACCCGTGGATATATGGCTCCTGAGTACTTGAATCATGGACAAAT 1666
|| | ||||||||||||||||||| ||||||||||| || ||| ||||||| ||||||||
Sbjct 1521 AAGACGAATAGCTGGAACCCGTGGGTATATGGCTCCCGAATACCTGAATCACGGACAAAT 1580
Query 1667 CTCAGCTAAATCTGACGTTTATAGCTTCGGTGTTATGCTTCTAGAGATGATTAGTGGTGA 1726
||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 1581 CTCAGCTAAATCTGACGTTTATAGCTTTGGTGTTATGCTTCTAGAGATAATAAGTGGTGA 1640
Query 1727 AAGAAACAATAGCTTCGAAGGAGAAGGACTTGCAGCTTTTGCATGGAAAAGATGGGTTGA 1786
||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1641 AAGAAACAATAGCTTCGTAGGAGAAGGACTTGCCGCTTTTGCATGGAAGAGATGGGTTGA 1700
Query 1787 AGGAAAGCCTGAGATTATAATTGATCCGTTCTTAATAGAGAATCCAAGAAATGAGATCAT 1846
|||||| |||||| ||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct 1701 AGGAAATACTGAGAGTATAATTGATCATTTCTTGATAGATCGGCCAAGAAACGAGATCAT 1760
Query 1847 CAAGTTGATCCAAATTGGTTTGTTGTGTGTTCAAGAGAATTCAACAAAGAGACCAACCAT 1906
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1761 TAAGTTGATCCAAATTGGTTTGTTGTGTGTTCAAGAGAATGCAGCAAAGAGACCAACCAT 1820
Query 1907 GAGCTCTGTAATAATTTGGCTTGGCAGTGAGACTATCATCATTCCTTTACCTAAAGCTCC 1966
|||||||| ||| |||||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 1821 AAGCTCTGTTATAGTTTGGCTTGGTAGTGAAACTATCATCATTCCTTTACCTAGAGCTCC 1880
Query 1967 TGCTTTCACTTGGATTCGATCCCAATCTGA-AAGTGGTGCAATGTCATTGAGCGACGATG 2025
|||||||||| | | || ||| |||||||| || |||| || |||| ||||||| ||||
Sbjct 1881 TGCTTTCACTAGAAGTCAATCTCAATCTGAGAA-TGGTATAAGGTCAATGAGCGATGATG 1939
Query 2026 TCTTCACGGAGTTGAGTTGTCGTTGA 2051
||||||||||||||||||||||||||
Sbjct 1940 TCTTCACGGAGTTGAGTTGTCGTTGA 1965
> Ahg895520 jgi|Araly1|895520|Al_scaffold_0006_3516
Length=1977
Score = 878 bits (475), Expect = 0.0
Identities = 748/879 (85%), Gaps = 22/879 (3%)
Strand=Plus/Plus
Query 1062 TCTGATTCTGATGGTCAATTC-ATGTTACGGTTTGATCTTGGTATGATCGTAATGGCAAC 1120
|||||||||||||||||| || | | || | ||||||||||| |||||| |||| |||||
Sbjct 952 TCTGATTCTGATGGTCAA-TCTACGCTAAGATTTGATCTTGGCATGATCTTAATTGCAAC 1010
Query 1121 TGATGACTTCTCCTCTGAAAATACGCTTGGCCAAGGTGGATTTGGTA-CGGTTTATAAGG 1179
||||| |||||| ||||||||| |||||| |||||||||||||| | | || || ||||
Sbjct 1011 CGATGAGTTCTCCCCTGAAAATAAGCTTGGACAAGGTGGATTTGG-ATCTGTCTACAAGG 1069
Query 1180 GGACATTCCCAAACGGGCAAGAGGTAGCGGTCAAGAGACTAACAAAAGGATCAGGACAAG 1239
||| ||| || | |||||||||| ||||||| |||||| || | | ||| ||||||||||
Sbjct 1070 GGATATTACCGAGCGGGCAAGAGATAGCGGTAAAGAGATTAGCTAGAGGTTCAGGACAAG 1129
Query 1240 GAGATA-TGGAGTTTAAGAATGAGGT-TTCACTCTTGACAAGACTCCAACATAAGAATCT 1297
|||| | | ||||| |||||||| || || ||| ||||||||||||||||||| ||||||
Sbjct 1130 GAGA-ACTAGAGTTAAAGAATGAAGTCTT-ACTTTTGACAAGACTCCAACATAGGAATCT 1187
Query 1298 TGTTAAGCTTCTTGGGTTCTGTAATGAGGGAGATGAAGAGATTCTTGTCTACGAGTTTGT 1357
|||||||||||||| ||||||||||| ||| | || ||||||||||| |||||| |||
Sbjct 1188 AGTTAAGCTTCTTGGATTCTGTAATGAAGGAAACGAGGAGATTCTTGTTTACGAGCATGT 1247
Query 1358 CCCCAACTCAAGTCTTGATCACTTTATCTTTGATGAAGATAAGCGTTCTCTTCTTACATG 1417
||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||
Sbjct 1248 TCCCAATTCAAGTCTTGATCACTTTATCTTCGATGAAGATAAGCGATGGCTTCTTACATG 1307
Query 1418 GGAGGTGAGGTTCAGAATTATAGAAGGCA-TTGCTCGAGGTCTTCTCTATCTCCATGAAG 1476
||| ||||||| |||||| |||||||| | |||| |||| ||||| |||||||||||||
Sbjct 1308 GGATGTGAGGTACAGAATCATAGAAGG-AGTTGCAAGAGGGCTTCTTTATCTCCATGAAG 1366
Query 1477 ATTCTCAGCTGAAGATTATTCACAGAGACTTGAAGGCAAGCAACATACTTTTAGACGCTG 1536
|||||||| ||| |||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1367 ATTCTCAGTTGAGGATTATTCACAGAGACTTGAAGGCAAGCAATATCCTTTTAGACGCGG 1426
Query 1537 AGATGAACCCTAAAGTTGCGGA-TTTCGGGACT-GCGAGGTTGTTCGAC-TCCGACGAGA 1593
||||||||||||||||||| || ||| |||| | ||||||||||| || | || ||||
Sbjct 1427 AGATGAACCCTAAAGTTGCAGACTTT-GGGA-TGGCGAGGTTGTTTAACAT-GGATGAGA 1483
Query 1594 CTCGAGCTGAAACAAAAAGAATAGCTGGAACCCGTGGATATATGGCTCCTGAGTACTTGA 1653
|||||| || |||| ||| ||| ||||||| |||||||||||||| |||||| | |
Sbjct 1484 CTCGAGGAGAGACAAGCAGAGTAGTTGGAACCTACGGATATATGGCTCCGGAGTACGT-A 1542
Query 1654 A-TCATGGACAAATCTCAGCTAAATCTGACGTTTATAGCTTCGGTGTTATGCTTCTAGAG 1712
| ||||||||| |||||||||||||||| |||||||||||||||||||||||| | |||
Sbjct 1543 AGACATGGACAATTCTCAGCTAAATCTGATGTTTATAGCTTCGGTGTTATGCTTTTGGAG 1602
Query 1713 ATGATTAGTGGTGAAAGAAACAATAGCTTCGAAGGAGAAGGACTTGCAGCTTTTGCATGG 1772
||||| |||||||||| ||| || | ||| ||| |||||||||| ||||||||||||||
Sbjct 1603 ATGATAAGTGGTGAAAAAAATAAGAACTTTGAAACAGAAGGACTTCCAGCTTTTGCATGG 1662
Query 1773 AAAAGATGGGTTGAAGGAAAGCCTGAGATTATAATTGATCCGTT-CTTAATA-GAGAATC 1830
|| |||||| | |||||| ||| ||||| |||||| || || || ||||| | |||||||
Sbjct 1663 AAGAGATGGATAGAAGGAGAGCTTGAGAGTATAATCGA-CCCTTACTTAA-ACGAGAATC 1720
Query 1831 CAAGAAATGAGATCATCAAGTTGATCCAAATTGGTTTGTTGTGTGTTCAAGAGAATTCAA 1890
| ||||| |||||||| ||||| ||| | ||||||||||||||||||||||||||| ||
Sbjct 1721 CGAGAAACGAGATCATAAAGTTAATCGAGATTGGTTTGTTGTGTGTTCAAGAGAATGCAG 1780
Query 1891 CAAAGAGACCAACCATGAGCTCTGTAATAATTTGGCTTG 1929
|||||||||||||||||| ||| |||||| ||||||||
Sbjct 1781 CAAAGAGACCAACCATGAACTCAGTAATAGCTTGGCTTG 1819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78580175435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5