BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04640.1
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943235 jgi|Araly1|943235|scaffold_603779.1 1916 0.0
Ahg920473 jgi|Araly1|920473|scaffold_101754.1 239 5e-62
> Ahg943235 jgi|Araly1|943235|scaffold_603779.1
Length=1208
Score = 1916 bits (1037), Expect = 0.0
Identities = 1154/1209 (95%), Gaps = 13/1209 (1%)
Strand=Plus/Plus
Query 105 GCAAAACACTGTCTGAAACAAACAACaaaaaaaTGGCTTGCTCTAATCTAACAACAATGT 164
|||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||
Sbjct 1 GCAAAACACTGTCTGAAACAAACATC-AAAAAATGGCTTGCTCTAATCTAACTACAATGT 59
Query 165 GGGTTTCATCAAAACCATCTCTTTCTGCTGATTCATCTTCCTTATCATTCCGATCTGTTC 224
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 60 GGGTTTCATCAAAACCATCTCTTTCTGCTGATTCATCTTCCTTATCTTTCCGATCTGTTC 119
Query 225 TCAAGTGCCCA-----ACT-----A--ACACTTCCTCACCTCCTTCACGAGCTTCCTCTG 272
||||||||||| || | |||||||||| || |||||| || | |||||||
Sbjct 120 TCAAGTGCCCAGTTCCTCTCCCAAATTACACTTCCTCTCCACCTTCAAGATCATCCTCTG 179
Query 273 TTTCACCACTCCAAGCGTCTCTTCGTGAGCTCAGAGACCGTATCGATTCAGTCAAAAACA 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTTCACCACTCCAAGCGTCTCTTCGTGAGCTCAGAGACCGTATCGATTCAGTCAAAAACA 239
Query 333 CTCAAAAGATCACCGAAGCTATGAAGCTTGTCGCTGCAGCTAAAGTCAGGAGAGCTCAAG 392
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTCAGAAGATCACCGAAGCTATGAAGCTTGTCGCTGCAGCTAAAGTCAGGAGAGCTCAAG 299
Query 393 AAGCTGTTGTCAATGGACGACCATTCTCAGAAACCCTAGTTGAAGTTCTTTACAACATCA 452
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 AAGCTGTCGTCAATGGCCGACCTTTCTCAGAAACCCTAGTTGAAGTTCTTTACAACATCA 359
Query 453 ACGAACAGCTTCAAACCGATGATGTCGATGTTCCCTTAACCAAAGTCAGACCGGTTAAGA 512
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 360 ACGAACAGCTTCAAACCGATGATGTCGATGTCCCCTTAACCAAAGTCAGACCGGTTAAGA 419
Query 513 AAGTAGCTCTCGTTGTCGTCACCGGTGATCGTGGATTATGTGGTGGATTCAACAATTTCA 572
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAGTAGCACTCGTTGTCGTAACCGGTGATCGTGGATTATGTGGTGGATTCAACAATTTCA 479
Query 573 TCATTAAGAAAGCAGAGGCAAGAATCAAAGAGCTTAAAGGTCTAGGTCTTGAATACACAG 632
|||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 480 TCATCAAGAAAGCAGAGGCAAGAATCAAAGAGCTTAAAGGTCTTGGTCTTGATTACACAG 539
Query 633 TCATTAGCGTGGGCAAGAAGGGAAATTCTTATTTCCTCCGTCGCCCGTACATCCCCGTCG 692
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 540 TCATTAGCGTGGGGAAGAAGGGAAATTCTTATTTCCTCCGTCGTCCGTACATACCCGTCG 599
Query 693 ACAAATACCTAGAAGCCGGAACTTTACCTACGGCTAAAGAAGCTCAAGCTGTGGCTGATG 752
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACAGATACCTCGAAGCCGGAACTTTACCTACGGCTAAAGAAGCTCAAGCTGTGGCTGATG 659
Query 753 ATGTCTTCTCTCTGTTTATAAGTGAAGAAGTCGACAAAGTCGAGCTCTTGTACACAAAGT 812
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 660 ATGTCTTCTCTCTGTTTATAAGCGAAGAAGTCGATAAAGTCGAGCTCTTGTACACAAAGT 719
Query 813 TTGTCTCTTTGGTCAAATCAGAACCCGTGATCCACACGCTACTGCCTTTATCACCTAAAG 872
|||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 720 TTGTGTCTTTGGTCAAATCAGAACCCGTGATCCACACGCTATTGCCTCTATCACCTAAAG 779
Query 873 GAGAGATCTGTGACATTAATGGAACCTGTGTGGATGCTGCGGAAGATGAGTTTTTCAGGT 932
|||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||
Sbjct 780 GAGAGATCTGTGACATTAATGGGACCTGTGTTGATGCTGCGGAAGATGAATTGTTCAGGC 839
Query 933 TAACGACAAAAGAAGGGAAATTGACAGTTGAAAGAGAGACTTTTAGGACACCAACAGCTG 992
||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 840 TAACGACGAAAGGAGGGAAATTGACGGTTGAAAGAGAGACTTTTAGGACACCAACAGCTG 899
Query 993 ATTTCTCGCCGATCTTGCAATTCGAGCAAGACCCTGTTCAGATTCTTGATGCTTTGTTGC 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ATTTCTCGCCGATCTTGCAATTCGAGCAAGACCCTGTTCAGATTCTTGATGCTTTGTTGC 959
Query 1053 CTCTGTATCTTAACAGTCAGATTCTTAGGGCATTACAGGAGTCATTGGCTAGTGAGCTTG 1112
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTCTGTATCTGAACAGTCAGATTCTTAGGGCATTACAGGAGTCATTGGCTAGTGAGCTTG 1019
Query 1113 CAGCTAGAATGAGTGCAATGAGTAGTGCTTCGGATAATGCATCGGATCTCAAGAAATCGC 1172
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1020 CAGCTAGAATGAGTGCAATGAGTAGTGCTTCGGATAATGCATCGGATCTTAAGAAATCGC 1079
Query 1173 TTTCGATGGTGTATAATAGAAAGCGTCAAGCTAAGATTACTGGAGAGATTCTTGAGATTG 1232
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TTTCCATGGTGTATAATAGAAAGCGTCAAGCTAAGATTACTGGAGAGATTCTTGAGATTG 1139
Query 1233 TTGCTGGAGCTAATGCACAGGTTTGATTTGTTTTGAACCCTCTTTGAATCTTCTATATGA 1292
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1140 TTGCTGGAGCTAATGCACAGGTTTGATTTGTTTTCAACCCTCTTTGAATCTTTTATATGA 1199
Query 1293 GTCCAAAAC 1301
|||||||||
Sbjct 1200 GTCCAAAAC 1208
> Ahg920473 jgi|Araly1|920473|scaffold_101754.1
Length=1187
Score = 239 bits (129), Expect = 5e-62
Identities = 415/548 (76%), Gaps = 40/548 (7%)
Strand=Plus/Plus
Query 715 TTTACCTACGGCTAAAGAAGCTCAAGCTGTGGCTGATGATGTCTTCT-CTCTGTTTATAA 773
||| || ||| ||||||||||||||| | | || ||||||||||| | || ||||| | |
Sbjct 617 TTTTCCAACGACTAAAGAAGCTCAAGTTATTGCAGATGATGTCTTTTCCT-TGTTTGTCA 675
Query 774 GTGAAGAAGTCGACAAAGTCGAGC-TCTTGTACACAAAGTTTGTCTCTTTGGTCAAATCA 832
|||||||||| || ||||| |||| | || |||||||||||||| |||||||| |||||
Sbjct 676 GTGAAGAAGTTGATAAAGTTGAGCTTGTT-TACACAAAGTTTGTGTCTTTGGTGAAATCT 734
Query 833 GAACCCGTGATCCACACGCTACTGCCTTTATCACCT-AAAGGAGAGATC-TGTGACATTA 890
|| || ||| | ||||| || ||||||| || | ||||||||| || ||||| | |
Sbjct 735 GATCCTGTGGTTCACACTCTGTTGCCTTTGTC-TATGAAAGGAGAG-TCTTGTGATGTGA 792
Query 891 ATGGA-ACCTGTGTGGATGCTGCGGAAGATGAG-TTTTTCAGGTTAACGA-CAAAAGAAG 947
| ||| | ||||| |||||| ||| |||||| | ||| ||| |||||| | ||||| |
Sbjct 793 AAGGAGA-GTGTGTTGATGCTATGGAGGATGAGATGTTT-AGGCTAACGAGC-AAAGATG 849
Query 948 GGAAATTGA-CAGTTGAAA-GA--GAGACTTTTAG--GACACCAACAGCTGATTTCTCGC 1001
|||| || | | || |||| || || ||| || || | | | |||| | || |
Sbjct 850 GGAAGTT-AGCTGTGGAAAGGACCAAG-CTTGAAGTTGAGA--AGC--CTGAGATATCAC 903
Query 1002 CGA-TCTTGCAATTCGAGCAAGACCCTGTTCAGATTCTTGATGCTTTGTTGCCTCTGTAT 1060
| | | |||| || ||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 904 C-ATTGATGCAGTTTGAGCAAGACCCTGTTCAGATTCTTGATGCAATGATGCCTTTGTAT 962
Query 1061 CTTAACAGTCAGATTCTTAGGGCATTACAGGAGTCATTGGCTAGTGAGCTTGCAG-CTAG 1119
|| |||||||||||||| || ||| | |||||||| || || |||||||| || | | ||
Sbjct 963 CTCAACAGTCAGATTCTAAGAGCACTGCAGGAGTCTTTAGCGAGTGAGCTCGC-GTCGAG 1021
Query 1120 AATGAGTGCAATGAGTAGTGCTTCGGATAATGCA-TCGGATCTCAAGAA-A-TCGCTTTC 1176
|||| ||| ||||||| ||| | |||||||| | | || | ||||| | || | |
Sbjct 1022 GATGAATGCGATGAGTAATGCGACTGATAATGCGGTTGAAT-TGAAGAAGAATC--TGAC 1078
Query 1177 GATGG-TGTATAATAGAAAGCGTCAAGCTAAGATTACTGGAGAGATT-CTTGAGATTGTT 1234
|||| | |||||| || | | || |||||||| ||||| ||| || || ||||||||
Sbjct 1079 AATGGCT-TATAATCGAGCGAGACAGGCTAAGATCACTGGGGAG-TTGCTGGAGATTGTG 1136
Query 1235 GCTGGAGC 1242
||||||||
Sbjct 1137 GCTGGAGC 1144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56944916275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5