BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04770.1
Length=1938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943249 jgi|Araly1|943249|scaffold_603793.1 2606 0.0
Ahg494555 jgi|Araly1|494555|fgenesh2_kg.8__371__AT5G44316.1 854 0.0
> Ahg943249 jgi|Araly1|943249|scaffold_603793.1
Length=1711
Score = 2606 bits (1411), Expect = 0.0
Identities = 1623/1724 (94%), Gaps = 20/1724 (1%)
Strand=Plus/Plus
Query 43 TCCTAAGAGCCACACCAACAACAATGGCGTCTCTTCTCGCAAACGGTATCTCCAGCTTCT 102
|||| |||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCCTTAGAG-C-CA-CAACAACAATGGCGTCTCTTCTCGCAAACGGTATCTCCAGCTTCT 57
Query 103 CTCCACAACCCACTTCCGATTCCTCAAAATCACCAAAAGGGTTTCACCCAAAACCCGAAT 162
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 58 CTCCACAACCCACTTCCGATTCTTCAAAATCACCAAAAGGGTTTCACCCAAAACCCGAAT 117
Query 163 CCTTAAAATTCCCATCTCCCAAATCCCTAAATCCAACGAGACCGATCTTCAAACTCAGA- 221
|||| ||||||||||||||||||||||||||||| |||||||| || |||||| |||||
Sbjct 118 CCTTGAAATTCCCATCTCCCAAATCCCTAAATCCGACGAGACCCATTTTCAAAGTCAGAG 177
Query 222 --GCCGA---TGTTGGAATCGATTCTCGTCCCATCGGAGCTTCTGAATCATCATCATCAG 276
||||| ||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 178 CCGCCGATGTTGTTGGAATCGATTCTCGTCCCATCGGAG---CTG----A--ATCATCAG 228
Query 277 GTACATCAACCGTTAGCTCAACTGATAAACTTCAACAGTATTTCCAAAATCTCGATTACG 336
|||||||||| ||||| || |||||||||||||||||||||||||| ||||| |||||||
Sbjct 229 GTACATCAACTGTTAGTTCCACTGATAAACTTCAACAGTATTTCCAGAATCTTGATTACG 288
Query 337 ATAAGAAGTACGGATTCGTTGAAGATATCGATTCCTTCACAATCCCTAAAGGTTTATCTG 396
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 ATAAGAAATACGGATTCGTTGAAGATATCGATTCCTTCACAATCCCTAAAGGTTTATCTG 348
Query 397 AAGAGACGATTCGTTTGATTTCGAAATTGAAAGAGGAACCAGATTGGATGCTTGAGTTTA 456
|||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 349 AAGAAACGATTCGTTTGATTTCGAAACTGAAAGAAGAACCAGATTGGATGCTTGAGTTTA 408
Query 457 GGTTCAAAGCTTATGCTAAGTTTCTGAAACTAGAAGAACCTAAATGGTCAGATAATAGAT 516
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 409 GGTTCAAAGCTTATGCTAAGTTTTTGAAGTTAGAAGAACCTAAATGGTCAGATAATAGAT 468
Query 517 ATCCTTCGATTAATTTCCAGGATATGTGTTATTACTCTGCTCCTAAAAAGAAACCAACTT 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 ATCCTTCGATTAATTTCCAGGATATGTGTTATTACTCTGCTCCTAAAAAGAAACCAACTT 528
Query 577 TGAATAGTTTAGATGAAGTTGATCCTCAGCTTCTTGAGTATTTCGATAAGTTAGGTGTTC 636
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 529 TGAATAGTTTAGATGAAGCTGATCCTCAGCTTCTTGAGTATTTCGATAAGTTAGGTGTTC 588
Query 637 CTTTAACAGAGCAGAAACGTTTGGCTAATGTCGCGGTTGATGCGGTTATCGATAGTGTTT 696
||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||
Sbjct 589 CTTTAACAGAGCAGAAACGTTTGGCTAATGTTGCCGTTGATGCGGTTCTCGATAGTGTTT 648
Query 697 CGATTGCTACTACTCATAGGAAGACTTTAGAGAAGTCTGGTGTTATCTTCTGTTCGATAT 756
|||| ||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||
Sbjct 649 CGATAGCTACTACTCATAGGAAGACTCTAGAGAAGTCCGGTGTGATCTTCTGTTCGATAT 708
Query 757 CTGAAGCTATTAGGGAGTATCCGGATTTGATTAAGAAGTATTTAGGTAGAGTTGTGCCTA 816
| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 709 CGGAAGCTATTAGGGAGTACCCGGATTTGATTAAGAAGTATTTAGGAAGAGTTGTGCCTA 768
Query 817 GTGATGATAATTACTACGC-TGCTTTGAACTCTGCGGTTTTCAGCGATGGGTCTTTCTGT 875
||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct 769 GTGATGATAATTACTACGCAT-CTTTGAATTCTGCGGTTTTCAGCGATGGGTCTTTCTGT 827
Query 876 TATATACCGAAGAACACTAGATGTCCGATGCCTATTTCGACTTATTTCCGGATTAACGCG 935
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 828 TATATACCGAAGAACACTAGATGCCCGATGCCTATTTCGACTTATTTCCGGATTAACGCG 887
Query 936 ATGGAGACTGGTCAGTTCGAGAGGACTTTGATTGTTGCTGAGGAAGGGAGTTTTGTTGAG 995
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 888 ATGGAGACTGGTCAGTTCGAGAGGACTTTGATTGTTGCAGAGGAAGGGAGTTTTGTTGAG 947
Query 996 TATTTAGAAGGATGTACTGCTCCTTCTTATGATACGAATCAGCTTCATGCTGCTGTGGTT 1055
||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 948 TATTTAGAAGGGTGTACTGCTCCTTCTTATGACACGAATCAGCTTCACGCTGCTGTTGTT 1007
Query 1056 GAGCTCTATTGTGGGAAAGGAGCTGAGATTAAGTACTCCACGGTGCAGAATTGGTATGCT 1115
||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1008 GAGCTCTATTGCGGGAAAGGAGCTGAGATCAAGTACTCTACGGTGCAGAATTGGTATGCA 1067
Query 1116 GGGGATGAACAAGGTAAAGGTGGGATTTATAATTTTGTCACAAAGCGTGGTCTTTGCGCT 1175
|||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||
Sbjct 1068 GGGGATGAACAAGGTAAAGGCGGGATTTACAATTTTGTCACCAAGCGTGGTCTTTGTGCC 1127
Query 1176 GGGGATCGTTCCAAGATCTCGTGGACTCAGGTTGAGACAGGGTCTGCGATAACTTGGAAG 1235
|||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1128 GGGGATCGCTCCAAAATCTCATGGACTCAGGTTGAGACAGGGTCTGCAATAACTTGGAAG 1187
Query 1236 TACCCGAGCGTGGTTTTAGAAGGCGATGATTCTGTTGGCGAGTTTTACTCCGTGGCATTG 1295
|| || |||||||||||||||||||||||||| ||||||||||||||||| || || |||
Sbjct 1188 TATCCAAGCGTGGTTTTAGAAGGCGATGATTCAGTTGGCGAGTTTTACTCGGTTGCTTTG 1247
Query 1296 ACTAATAACTATCAGCAAGCTGATACAGGGACTAAGATGATTCACAAAGGAAAGAATACC 1355
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1248 ACTAATAACTATCAGCAAGCTGATACAGGGACCAAGATGATTCACAAAGGAAAGAATACA 1307
Query 1356 AAAAGTAGAATCATTTCAAAGGGAATTTCGGCCGGGCATTCGAGAAATTGTTACCGTGGT 1415
||||| || |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1308 AAAAGCAGGATCATTTCAAAGGGAATTTCAGCTGGGCATTCGAGAAATTGTTACCGTGGT 1367
Query 1416 CTTGTTCAGGTGCAGTCCAAAGCTGAGGGTGCTAAAAATACTTCGACTTGCGACTCAATG 1475
||||||||||| || |||||||||||| |||||||||||| ||||||||||| ||||||
Sbjct 1368 CTTGTTCAGGTTCAATCCAAAGCTGAGAATGCTAAAAATACATCGACTTGCGATTCAATG 1427
Query 1476 CTTATCGGAGACAAAGCAGCTGCAAATACCTATCCTTACATCCAGGTAAAGAATCCATCG 1535
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1428 CTTATCGGTGACAAAGCAGCTGCTAATACCTATCCTTACATCCAGGTAAAGAATCCATCG 1487
Query 1536 GCGAAAGTAGAGCACGAAGCGAGTACCTCTAAGATTGGAGAAGATCAGCTATTCTATTTC 1595
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 1488 GCGAAAGTAGAGCACGAAGCGAGTACCTCAAAGATTGGAGAAGACCAGCTTTTCTATTTC 1547
Query 1596 CAGCAGAGAGGAATCGATCACGAGAGAGCATTAGCGGCAATGATCTCTGGTTTCTGCAGA 1655
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1548 CAGCAGAGAGGAATAGATCACGAGAGAGCATTAGCAGCGATGATCTCTGGTTTCTGCAGA 1607
Query 1656 GATGTTTTCAACAAGTTACCTGATGAGTTTGGAGCTGAAGTTAACCAGCTTATGAGCATC 1715
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1608 GATGTCTTCAACAAGTTACCTGATGAATTTGGAGCTGAAGTTAACCAGCTTATGAGCATC 1667
Query 1716 AAGCTTGAAGGATCAGTGGGTTAAAACAAAACTCATAATTACAG 1759
|||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1668 AAGCTTGAAGGATCAGTGGGTTAATACAAAACTCACCATTACAG 1711
> Ahg494555 jgi|Araly1|494555|fgenesh2_kg.8__371__AT5G44316.1
Length=1381
Score = 854 bits (462), Expect = 0.0
Identities = 703/814 (86%), Gaps = 38/814 (5%)
Strand=Plus/Plus
Query 298 CTGATAAACTTCAACAGTATTTCCAA-AATCTCGATTACGATAAGAAGTACGGATTCGTT 356
|||||||||||||||||||||| ||| |||| ||||||| |||||| ||||||||| |
Sbjct 176 CTGATAAACTTCAACAGTATTT-CAAGAATCAAGATTACGTTAAGAAATACGGATTCACT 234
Query 357 GAAGATATCGATTC-CTTCACAATCCCTAAAGGTTTATCTGAAGAGACGATTCGTTTGAT 415
||| |||||||||| | ||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 235 GAACATATCGATTCGC-TCACAATCCCTAACGGTTTATCTGAAGAAACGATTCGCTTGAT 293
Query 416 TTCGAAATTGAAAGAGGAACCAGA-TTGGATGCTTGAGTTTAGGTTCAAAGCTTATGCTA 474
|||||||||||| |||||||| | |||||| |||||||||||| |||||||||||||||
Sbjct 294 ATCGAAATTGAAAAAGGAACCA-ACTTGGATTCTTGAGTTTAGGCTCAAAGCTTATGCTA 352
Query 475 AGTTTCTGAAACTAGAAGAACCTAAATGGTCAGATAATAGATATCCTTCGATTAATTTCC 534
||||||||||| |||||||||||||||||||||||||||| ||||||| | ||||| |||
Sbjct 353 AGTTTCTGAAATTAGAAGAACCTAAATGGTCAGATAATAGGTATCCTTTGCTTAATCTCC 412
Query 535 AGGATATGTGTTATTACTCTGCTCCTAAAAAGAAACCAACTTTGAATAGTTTAGATGAAG 594
| ||||||||||||||||||| |||||||||||||||||| || | | ||| |
Sbjct 413 AAGATATGTGTTATTACTCTGTTCCTAAAAAGAAACCAAC-TT---T-G----GAT--A- 460
Query 595 TTGATCCTCAGCTTCTTGAG-TATTTCGATAAG-TTAGGTGTTCCTTTAACAGAGCAGAA 652
||||| || |||||||| ||||| ||| || |||| ||||||| ||||| || ||||
Sbjct 461 ---ATCCTAAGGTTCTTGAGATATTT-GAT-AGATTAGATGTTCCTATAACAAAGAAGAA 515
Query 653 ACGTT-TGGCTAATGTCGCGGTTGATGCGGTTATCGATAGTGTTTCGATTGCTACT-ACT 710
| ||| | |||| || ||||||||||||||| || |||||| || || |||| | |||
Sbjct 516 ATGTTCT-CCTAAGGTTGCGGTTGATGCGGTTTTCAATAGTGAATCTATAGCTA-TCACT 573
Query 711 CAT-AGGAAGACTTTAGAGAAGTCTGGTGTTATCTTCTGTTCGATATCTGAAGCTATTAG 769
|| ||| || || |||||||||| ||||| ||||| ||||||||||| |||||||||||
Sbjct 574 AATAAGG-AGCCTCTAGAGAAGTCAGGTGTGATCTTTTGTTCGATATCCGAAGCTATTAG 632
Query 770 GGAGTATCCGGATTTGATTAAGAAGTATTTAGGTAGAGTTGTGCCTAGTGATGATAATTA 829
| ||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 633 GAAGTATCCGGCTTTGATCAAGAAGTATTTAGGAAGAGTTGTGCCTAGTGATGATAATTA 692
Query 830 CTACGCTGCTTTGAACTCTGCGGTTTTCAGCGATGGGTCTTTCTGTTATATACCGAAGAA 889
|||||| |||||||| ||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 693 CTACGCGGCTTTGAATTCTGCGGTTTTCAGCGATGGGTCTTTCTGTTATGTACCAAAAAA 752
Query 890 CACTAGATGTCCGATGCCTATTTCGACTTATTTCCGGATTAACGCGATG--GAG-ACTGG 946
||| ||||||| ||||||| |||||| |||||||||||| ||||||||| ||| |||||
Sbjct 753 CACGAGATGTCTGATGCCTGTTTCGAGTTATTTCCGGATGAACGCGATGAAGAGTACTGG 812
Query 947 TCAGTTCGAGAGGACTTTGATTGTTGCTGAGGAAGGGAGTTTTGTTGAGTATTTAGAAGG 1006
||| || || ||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 813 TCAATTTGAAAGGACTTTGATTGTTGCTGAGGAAGGGAGTTATGTTGAGTATTCAGAAGG 872
Query 1007 ATGTACTGCTCCT-TCTTATGATACGAATCAGCTTCATGCTGCTGTGGTTGAGCTCTATT 1065
||| |||||| | ||| |||| | |||||||||||| ||||| ||||||||||||||||
Sbjct 873 ATGCACTGCTA-TATCTCATGACAAGAATCAGCTTCACGCTGCGGTGGTTGAGCTCTATT 931
Query 1066 GTG-GGAAAGGAGCTGAGATTAAGTACTCCACGG 1098
| | |||| ||||| |||||||||||||| ||||
Sbjct 932 GCGCGGAA-GGAGCAGAGATTAAGTACTCGACGG 964
Score = 433 bits (234), Expect = 3e-120
Identities = 280/303 (92%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 1435 AAGCTGAGGGTGCTAAAAATACTTCGACTTGCGACTCAATGCTTATCGGAGACAAAGCAG 1494
|||| ||| |||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 1079 AAGCCGAGAATGCTAAAAATACATCGACTTGCGACTCAATGCTTATCGGTGACAATGCAG 1138
Query 1495 CTGCAAATACCTATCCTTACATCCAGGTAAAGAATCCATCGGCGAAAGTAGAGCACGAAG 1554
| || ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||
Sbjct 1139 CCGCTAATACCTATCCTTACATACAGGTAAAGAATCCATCGGCGAGAGTGGAGCACGAAG 1198
Query 1555 CGAGTACCTCTAAGATTGGAGAAGATCAGCTATTCTATTTCCAGCAGAGAGGAATCGATC 1614
| ||||| || |||||||||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 1199 CAAGTACTTCAAAGATTGGAGAAGATCAGATTTTCTATTTCCAGCAGAGAGGAATAGATC 1258
Query 1615 ACGAGAGAGCATTAGCGGCAATGATCTCTGGTTTCTGCAGAGATGTTTTCAACAAGTTAC 1674
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1259 ACGAGAGAGCATTAGCGGCAATGATCTCTGGATTCTGCAGAGATGTCTTCAACAAGTTAC 1318
Query 1675 CTGATGAGTTTGGAGCTGAAGTTAACCAGCTTATGAGCATCAAGCTTGAAGGATCAGTGG 1734
||||||| ||||||||||||||||| |||||| ||||||| |||||||||||||||||||
Sbjct 1319 CTGATGAATTTGGAGCTGAAGTTAATCAGCTTTTGAGCATTAAGCTTGAAGGATCAGTGG 1378
Query 1735 GTT 1737
|||
Sbjct 1379 GTT 1381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72828548440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5