BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04850.2
Length=3026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895551 jgi|Araly1|895551|Al_scaffold_0006_3547 3670 0.0
> Ahg895551 jgi|Araly1|895551|Al_scaffold_0006_3547
Length=2271
Score = 3670 bits (1987), Expect = 0.0
Identities = 2177/2268 (96%), Gaps = 16/2268 (1%)
Strand=Plus/Plus
Query 579 ACAACATAGTGTTCGATTAAAGCATTGCGTTTTCACGGTGAAATCGAGTGTGCCTGTGTA 638
|||||| | || |||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 15 ACAACACAATGGTCGATTGAAGCATTGTGTTTTCACGGTGAAATCGAGTGTGCCTGTGTA 74
Query 639 TTCGGAAGGCGTAAACGATGGGATTAAGTTGCATTCTTTTGGGAATTTAGTT-AAA-AAG 696
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 75 TTCGGAAGGCGTAAACGATGGGATTAAGTTGCATTCTTTTGGGAATTTAGTTAAAACAAG 134
Query 697 AAGG-TTTTTCTGGATACCTCTAAG-AGATTCTATTTCCAAGGGAGATGGTCTGAA-TCG 753
|||| ||||||||||||| || || || |||||||||||||| |||||||||||| ||
Sbjct 135 AAGGTTTTTTCTGGATACTTC-GAGAAGGTTCTATTTCCAAGGTAGATGGTCTGAATTC- 192
Query 754 TCAGGGAGGAGAGTGGAGACTTATGCTGGAGTAGATGTAGCGAGTGCTGTTGATGTAATC 813
||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 193 TCAGGGAGGAGAGTGCAGACTTATGCAGGAGTAGATGTAGCAAGTGCTGTTGATGTAATC 252
Query 814 AACGATCTTGGATTCGATACTTTGACCTTCTTGATGGTTACTGTTATTATTGTCCCTGCA 873
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 253 AACGATCTTGGATTCGATACTTTGACCTTCTTGATGGTCACTGTTATTATTGTCCCTGCA 312
Query 874 TTCAGAATTCTCAAAGCTAGTCCGATACTTGGTTTCTTCTTTGCTGGTGTTGTACTCAAC 933
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 TTCAGAGTCCTCAAAGCTAGTCCGATACTTGGTTTCTTCTTTGCTGGTGTTGTACTCAAT 372
Query 934 CAATTTGGTTTGATTAGAAATCTCACAGATGTTAAAGTTCTTTCAGAATGGGGGATTCTT 993
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 373 CAATTTGGTTTGATCAGAAATCTCACAGATGTTAAAGTTCTTTCGGAATGGGGGATTCTT 432
Query 994 TTCCTGCTCTTTGAGATGGGTCTCGAGCTTTCACTTGCTCGTCTGAAAGCTCTTGCAAAA 1053
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 433 TTCCTGCTCTTTGAGATGGGTCTAGAGCTTTCACTTGCTCGTCTGAAAGCTCTTGCAAAA 492
Query 1054 TTTGCTTTTGGCATGGGACTAACTCAGGTTTTGTTATGCACGGCTGCATTCACTGCTTTT 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 TTTGCTTTTGGCATGGGACTAACTCAGGTTTTGTTATGCACGGCTGCATTCACTGCTTTT 552
Query 1114 GAACTCCCACCAAATGGAGCCATCGGAACAAAAATTCTGGAATTCCTCTTTCATTCAAGG 1173
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 553 GAACTCCCACCAAATGGAGCCATCGGAACAAAAATTCTCGAATTCCTCTTTCATTCAAGG 612
Query 1174 CCTGACTTGGTCAACATTAGAAGCATTGATGAGGCCGTTGTCATTGGCGCTGCTCTATCA 1233
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 613 CCTGACTTGGTCAACATTAGAAGCATCGATGAGGCTGTTGTCATTGGCGCTGCTCTTTCA 672
Query 1234 TTGTCATCTTCAGCTTTTGTTCTACAGCTTCTTGCAGAGAAAGGTGAGCTCCCTACAAGA 1293
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 673 TTGTCATCTTCAGCTTTTGTTCTCCAGCTTCTTGCAGAGAAAGGAGAGCTCCCTACAAGA 732
Query 1294 TTTGGCTCAGCAACCTTGGGAATTCTTCTTCTACAGGATATAGCTGTTGTGCCGTTACTA 1353
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 733 TTTGGCTCAGCAACCTTGGGAATTCTTCTTCTACAGGATATAGCTGTTGTACCGTTACTA 792
Query 1354 GTCATTCTTCCAGTGTTGGAAAGCCAGGATATTGGTGGGGAAAGCATATGGCCAATGCTT 1413
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 793 GTCATTCTTCCGGTGTTGGAAAGCCAGAATATTGGTGGGGAAAGCATATGGCCAATGCTT 852
Query 1414 GCAAAAGAAAGTGCAAAGGCTCTTGGTGGGTTGGGCATCCTCTCTCTTGGAGGAAAGTTC 1473
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 853 GCAAAAGAAAGTGCAAAGGCTCTTGGTGGGTTGGGCATTCTCTCTCTTGGAGGAAAGTTC 912
Query 1474 TTTCTCCGTAGAATTTTCGAGGTTGTTGCAGAAACAAGAAGCTCAGAAGCTTTTGTGGCC 1533
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 913 TTTCTCCGTAGAATTTTCGAGGTTGTTGCAGAAACCAGAAGCTCGGAAGCTTTTGTGGCC 972
Query 1534 CTTTGCCTTCTCACAGTTGCTGGGACTTCACTTGTGACTCAATGGCTTGGTTTCAGCGAT 1593
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 973 CTTTGCCTTCTCACAGTTGCTGGGACTTCACTTGTGACTCAATGGCTTGGTTTCAGTGAT 1032
Query 1594 ACGCTTGGAGCTTTTCTTGCTGGAGCACTTCTAGCAGAAACAAATTTCCGAACACAAATT 1653
|||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1033 ACGCTTGGAGCTTTTCTTGCCGGAGCACTTCTAGCGGAAACAAATTTCCGGACACAAATC 1092
Query 1654 GAAGCTGATATTAGGCCATTTAGAGGTTTACTTCTCGGTTTGTTCTTTGTAACCACAGGA 1713
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1093 GAAGCTGATATAAGGCCATTTAGAGGTTTACTTCTTGGTTTGTTCTTTGTAACCACAGGA 1152
Query 1714 ACTTCCATTGACATGGAGGTTCTGTTTCGAGAATGGCCTAATGTCCTCTCACTCTTGGGT 1773
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1153 ACATCCATTGACATGGAGGTTCTGTTTCGTGAATGGCCTAATGTCCTCTCACTCTTGGGT 1212
Query 1774 GGTCTGATTGTGATCAAAACACTGATTATAACCGCAATCGGTCCCCGAGTTGGCCTCACA 1833
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1213 GGTCTGATTGTGATCAAAACACTTATCATAACCGCAATCGGTCCCCGAGTTGGCCTCACA 1272
Query 1834 ATACAAGAAAGCGTAAGAGTTGGCTTTCTTCTTTCCCAGGGAGGAGAATTTGCATTTGTT 1893
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1273 ATACAAGAAAGCGTAAGAGTTGGTTTTCTTCTTTCCCAGGGAGGGGAATTTGCATTTGTT 1332
Query 1894 GTGTTCTCTCTAGCCAACAGGCTAGGAGTGCTTCCAAATGAGCTGAACAAACTGCTCATT 1953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GTGTTCTCTCTAGCCAACAGGCTAGGAGTGCTTCCAAATGAGCTGAACAAACTGCTCATT 1392
Query 1954 ATCGTAGTTGTTTTGTCTATGGCATTAACACCTTATCTTAACCAACTTGGAAGAAAAGCC 2013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 ATCGTAGTTGTTTTGTCTATGGCATTAACACCTTATCTTAACCAACTTGGAAGAAAAGCC 1452
Query 2014 GCCGATTTTCTTGATGAGAGACTTGATCCCGGAGAGAAAATAGGTGAAGATGTGAACTTC 2073
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1453 TCCGATTTTCTTGATGAGAGACTTGATCCCGGAGAGAAAATAGATGAAAATGTGAACTTC 1512
Query 2074 GATGTTAGTGAATCAATTGTCATCATTGGATTTGGACAAATGGGTCAGGTTCTGGCCAAT 2133
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 GACGTTAGTGAATCAATTGTCATCATTGGATTTGGACAAATGGGTCAGGTTCTGGCCAAT 1572
Query 2134 TTTTTGTCAACGCCATTGGTCTCAGATAGTGATCTTGTGGGATGGCCTTATATTGGTTTT 2193
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1573 TTTTTGTCAACGCCGTTGGTCTCAGATAGTGATCTTGTGGGATGGCCTTATATTGGCTTT 1632
Query 2194 GATCTGAATCCTGCTGTAGTGAAGGAATCAAGGAAACTCGGTTTCCCGATATTGTATGGA 2253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1633 GATCTGAATCCTGCTGTAGTGAAGGAATCAAGGAAACTCGGTTTCCCGATATTGTATGGA 1692
Query 2254 GACGGATCTCGACCATCGGTTTTGCAATCTGCAGGGGTTTCATCTCCTAAAGCTATCATG 2313
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1693 GACGGATCTCGACCATCGGTTTTGCAATCTGCTGGTGTTTCATCTCCTAAAGCTATCATG 1752
Query 2314 ATAATGTATAAAGGCAAGAAGAGAACCACTGAGGCTGTTCAAAGACTCCGTCTTGCCTTC 2373
|||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 1753 ATAATGTATAAAGGCAAGAAGAGAACTACAGAGGCTGTTCAAAGACTCCGCCTTGCCTTC 1812
Query 2374 CCCGGGAGTCCTATTTACGCAAGAGCTCAAGATTTACCGCATCTCCTTGAACTAAAGAAA 2433
|| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1813 CCGGGGAGTCCAATTTATGCAAGAGCTCAAGATTTACCGCATCTACTTGAACTAAAGAAA 1872
Query 2434 GCAGGAGCCACAGATGCAATTCTCGAAAATGCAGAGACAAGTTTACAGCTCGGTTCGAAG 2493
|||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1873 GCAGGAGCAACGGATGCAATTCTTGAAAATGCAGAGACAAGTTTACAGCTCGGCTCGAAG 1932
Query 2494 CTGTTGACAGGATTTGGAGTAATGTCTGACGACGTAAGCTTTCTAAGTAAAGTTTTCAGA 2553
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1933 CTGTTGACAGGATTTGGAGTAATGTCTGACGACGTAAGCTTTCTGAGTAAAGTTTTCAGA 1992
Query 2554 GATTCAATGGAGATACAAGCTCAAGAAGAAATCACAGCTAGTGAAACAAATGCTGGTTTG 2613
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1993 GATTCAATGGAGATACAAGCTCAAGAAGAAATCACTGCTAGTGAAACCAATGCTGGTTTG 2052
Query 2614 AAGCCAATGCAAATGAAAGCATCTGATATAAACGTAGTGTCTGCTGCAACACAAAAACAA 2673
||||||||||| |||||||| |||||||||||||||| ||||| |||| || | |||
Sbjct 2053 AAGCCAATGCAGATGAAAGCTTCTGATATAAACGTAGAGTCTGGTGCA-CA-A----CAA 2106
Query 2674 GTCCAGCTCATGAAGCCAATGCAAATGAAAGCTTCTGATTCAAACTCAGATTCTGCAGCA 2733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2107 GTCCAGCTCATGAAGCCAATGCAAATGAAAGCTTCTGATTCAAACTCAGATTCTGCAGCA 2166
Query 2734 GAGATTCTTCAAGAAACAGCTGGTTTGAGTCAGCCTCCTGAGATTGATGATTCTTCTGTG 2793
|| |||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||
Sbjct 2167 GAAATTCTTCAAGAAACAGATAGTTTGAGTCAGTCTC---AGATTGATGATTCTTCTGTG 2223
Query 2794 AATATAGATAATGGATTTGTTGGTAAAGCTGATAAAGCTCAAGATTAA 2841
|||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2224 AATATAGATAATGGATTTGTTGGTAAAGCTGATAAAGCTCAAGAGTAA 2271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114270735000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5