BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G04860.1 Length=1351 Score E Sequences producing significant alignments: (Bits) Value Ahg490119 jgi|Araly1|490119|fgenesh2_kg.6__3253__AT4G04860.1 1406 0.0 Ahg492693 jgi|Araly1|492693|fgenesh2_kg.7__2126__AT4G21810.1 797 0.0 > Ahg490119 jgi|Araly1|490119|fgenesh2_kg.6__3253__AT4G04860.1 Length=1189 Score = 1406 bits (761), Expect = 0.0 Identities = 925/1001 (92%), Gaps = 23/1001 (2%) Strand=Plus/Plus Query 4 AATTAAACAAATATCGCAAATGTTAAACTATTATACACATATAAATTTCTGTATATACAA 63 |||||||||||||||||||| | | |||| ||||||| ||||||| ||||||||| | Sbjct 1 AATTAAACAAATATCGCAAA-ACT-ATTTATT-TACACATTTAAATTTGTGTATATAC-A 56 Query 64 AACAAACGAAGAAGACGAATCTCTCAGTTTCGTCGTTCGTTTCGAAGTTGTGCGTTGGTG 123 ||||||||||||||||||||||||||||||| |||||||| ||||||||||| | || Sbjct 57 GACAAACGAAGAAGACGAATCTCTCAGTTTCG--ATTCGTTTCAAAGTTGTGCGTAGTTG 114 Query 124 AAATTTGAAATCTGAATACACTCATTGC-AA-ACCTTagaagaagaagaag--aaga-ag 178 |||||||||||||||| ||||||||||| || ||||| ||||||||||||| | || Sbjct 115 AAATTTGAAATCTGAA-ACACTCATTGCAAACACCTTTGAAGAAGAAGAAGCTTTCATAG 173 Query 179 aagaag-aagCTTCCATA-GATTCCGTTG-GGCTTTTACTGTGTTTGATTGATCGGATCG 235 | | | || | || | || || || | || | | | |||| |||||||||||| Sbjct 174 ATTCCGTTGGGTT-C-TAGGGTTTCG-TGACGATTGGA-T-T-TTTGCTTGATCGGATCG 227 Query 236 ATTGCGATTACGGAGAAGATATGGCTCAGGCTGTAGAAGAATGGTATAAACAGATGCCGA 295 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 228 ATTGCGATTAAGGAGAAGATATGGCTCAGGCTGTAGAAGAATGGTATAAACAGATGCCGA 287 Query 296 TTATCACTCGCTCTTATCTCACGGCGGCTGTTATCACCACCGTCGGATGTTCCCTCGATA 355 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 288 TTATCACTCGCTCATATCTCACGGCGGCTGTTATCACCACCGTCGGATGTTCCCTCGATA 347 Query 356 TCATATCTCCATATAACCTTTATTTGAATCCGACACTTGTGGTGAAGCAATACCAATATT 415 | |||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 348 TTATATCTCCCTATAACCTCTATTTGAATCCGACCCTTGTGGTGAAGCAATACCAATATT 407 Query 416 GGCGTCTCGTTACTAATTTCTTGTATTTCCGGAAGATGGATTTGGACTTCATGTTCCATA 475 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 408 GGCGTCTCGTTACAAATTTCTTGTATTTCCGGAAGATGGATTTGGACTTCATGTTCCATA 467 Query 476 TGTTCTTTCTCGCACGATACTGCAAACTCCTTGAAGAAAACTCATTCAGGGGAAAGACTG 535 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 468 TGTTCTTTCTCGCACGATACTGCAAACTCCTTGAAGAAAACTCATTCAGGGGAAAGACTG 527 Query 536 CTGATTTCCTATACATGCTCCTATTTGGAGCATCTGTTTTAACCGGTATTGTACTTA-TC 594 ||||||||||||||||||||||||||||||| |||||| ||||||||||||| | || || Sbjct 528 CTGATTTCCTATACATGCTCCTATTTGGAGCTTCTGTTCTAACCGGTATTGTTC-TACTC 586 Query 595 GGTGGAATGATACCATACTTGTCAGCATCATTTGCTAAAATCATCTTCCTCAGCAACTCA 654 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 587 GGTGGAATGATACCGTACTTGTCTGCATCATTTGCTAAAATCATCTTCCTCAGCAACTCA 646 Query 655 TTAACTTTCATGATGGTCTATGTATGGAGCAAACAAAATCCTTATATTCACATGAGTTTC 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 647 TTAACTTTCATGATGGTCTATGTATGGAGCAAACAAAATCCTTATATTCACATGAGTTTC 706 Query 715 CTTGGTCTGTTCACCTTCACAGCAGCTTACCTACCATGGGTGCTTCTTGGCTTCTCTATC 774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 707 CTTGGTCTGTTCACCTTCACAGCAGCTTACCTACCATGGGTGCTTCTTGGCTTCTCTATC 766 Query 775 CTTGTTGGTGCCAGTGCTTGGGTGGATCTTTTGGGTATGATAGCAGGTCACGCTTACTAC 834 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 767 CTTGTTGGTGCCAGTGCTTGGGTGGATCTTTTGGGTATGATAGCAGGTCACGCGTACTAC 826 Query 835 TTTCTGGCTGAGGTTTATCCGCGAATGACTAATCGTCGTCCATTAAAGACTCCATCATTC 894 |||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||| ||| Sbjct 827 TTTCTGGCTGAGGTCTATCCACGAATGACTAATCGTCATCCTTTAAAGACTCCATCGTTC 886 Query 895 CTCAAAGCGTTATTTGCAGATGAACCAGTTGTGGTTGCACGGCCAGAAGATGTGAGGTTT 954 |||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 887 CTCAAAGCCCTATTTGCAGATGAACCAGTTGTGGTTGCACGGCCAGAAAACGTGAGGTTT 946 Query 955 GCTGCTGCGCCTTTCGATGAAATCCACCAAGACTGATTCTG 995 |||||||||||||| ||||||||||||||||||||| |||| Sbjct 947 GCTGCTGCGCCTTTTGATGAAATCCACCAAGACTGAGTCTG 987 Score = 235 bits (127), Expect = 6e-61 Identities = 181/206 (88%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 1034 AGTTTGGCTTGTGGATCAGATATAAATGGTGCAAAGGCAGATGATACACAAAAGTCTATT 1093 |||||||||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| Sbjct 988 AGTTTGGCTTGTTGATCATATATATATGGTAAAAAGGCAGATGATACAC-AAAGTCTA-- 1044 Query 1094 TTGACTCTGACACG-TAG-T-TGCGACCCACACACCCTAGTTTCTAGTAGTTGGGTGTGT 1150 || ||||||||||| ||| | || ||||||||||||||||||||||||||||||||||| Sbjct 1045 TTAACTCTGACACGCTAGTTATGAAACCCACACACCCTAGTTTCTAGTAGTTGGGTGTGT 1104 Query 1151 TTTGGTTCCTTCTCTTTCCTCCCATCTCTTCATCTTTTTGTGTATACAAACAT-CGTTTG 1209 |||||||||||| |||| |||||||||||| ||||| ||||||||||||| | | |||| Sbjct 1105 TTTGGTTCCTTCCCTTTTCTCCCATCTCTTTATCTTGTTGTGTATACAAATTTGC-TTTG 1163 Query 1210 CTTTTAGTGGTTATTGATATGAACAC 1235 || ||||||||||| |||||| |||| Sbjct 1164 CTCTTAGTGGTTATGGATATGGACAC 1189 > Ahg492693 jgi|Araly1|492693|fgenesh2_kg.7__2126__AT4G21810.1 Length=1138 Score = 797 bits (431), Expect = 0.0 Identities = 646/749 (86%), Gaps = 18/749 (2%) Strand=Plus/Plus Query 255 TATGGCTCAGGCTGTAGAAGAATGGTATAAACAGATGCCGATTATCACTCGCTCTTATCT 314 ||||||||| || ||||||||||||||||| |||||||||||||| || || || ||||| Sbjct 183 TATGGCTCAAGCCGTAGAAGAATGGTATAAGCAGATGCCGATTATAACCCGGTCGTATCT 242 Query 315 CACGGCGGCTGTTA-TCACCACCGTCGGATGTTCCCTCGATATCATATCTCCATATAACC 373 ||||||||||| || ||||||||||||||||||| ||||| || |||||||| ||||| | Sbjct 243 CACGGCGGCTG-TAGTCACCACCGTCGGATGTTCGCTCGAGATTATATCTCCTTATAATC 301 Query 374 TTTATTTGAATCCGACACTTGTGGTGAAGCAATACCAATAT-TGGCGTCTCGTTACTAAT 432 | || | ||||| || |||||||||||||||||||| | | |||||||| ||||| ||| Sbjct 302 TCTACCTAAATCCTACCCTTGTGGTGAAGCAATACCAGT-TCTGGCGTCTTGTTACAAAT 360 Query 433 TT-CTTGTATTTCCGGAAGATGGATTTGGACTTCATGTTCCATATGTTCTTTCTCGCACG 491 || ||| |||||||| ||||||||||||||||| ||||||||||||| ||||| || || Sbjct 361 TTCCTT-TATTTCCGAAAGATGGATTTGGACTTTTTGTTCCATATGTTTTTTCTAGCTCG 419 Query 492 ATACTGCAAACTCCTTGAAGAAAACTCATTCAGGGGAAAGACTGCTGATTTCCTATACAT 551 |||||||||||| || ||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct 420 ATACTGCAAACTACTCGAAGAAAACTCCTTCAGGGGAAAGACTGCGGATTTCCTTTACAT 479 Query 552 GCTCCTATTTGGAGCATCTGTTTTAACCGGTATTGTACTTATCGGTGGAATGATACCATA 611 |||| |||| || ||| ||||| |||| |||||||| || ||||| ||||||||||| || Sbjct 480 GCTCTTATTCGGGGCAACTGTTCTAACTGGTATTGTTCTCATCGGCGGAATGATACCTTA 539 Query 612 CTTGTCAGCATCATT-TGCTAAAATCATCTTCCTCAGCAACTCATTAACTTTCATGATGG 670 ||||||| ||||| | | |||||||||||||||||||| ||||| ||||||||||||| Sbjct 540 TTTGTCAGTGTCATTCT-CCAAAATCATCTTCCTCAGCAATTCATTGACTTTCATGATGG 598 Query 671 TCTATGTATGGAGCAAACAAAATCCTTATATTCACATGAGTTTCCTTGGTCTGTTCACCT 730 ||||||||||||| |||||||||||||| || || |||||||||||||| || ||||| | Sbjct 599 TCTATGTATGGAGTAAACAAAATCCTTACATCCATATGAGTTTCCTTGGCCTTTTCACTT 658 Query 731 TCACAGCAGCTTACCTACCATGGGTGCTTCTTGGCTTCTCTATCCTTGTTGGTGCCAGTG 790 |||||||||| || |||||||||| |||||||| ||||| |||||||||||||| |||| Sbjct 659 TCACAGCAGCGTATTTACCATGGGTACTTCTTGGGTTCTCAATCCTTGTTGGTGCAAGTG 718 Query 791 CTTGGGTG-GATCTTT-TGGGTATGATAGCAGGTCACGCTTACTACTTTC-TGGCTG-AG 846 |||||| | ||| ||| |||| |||||||| ||||| || |||||| ||| | || | Sbjct 719 CTTGGG-GAGAT-TTTCTGGGAATGATAGCGGGTCATGCATACTAC-TTCTTAGC-GTTT 774 Query 847 GTTTATCCGCGAATGACTAATCGTCGTCCATTAAAGACTCCATCATTCCTCAAAGCGTTA 906 || ||||| |||||||| |||| ||||| || ||||||||||| ||||||||||| || Sbjct 775 GTGTATCCACGAATGACGGATCGACGTCCCTTGAAGACTCCATCTTTCCTCAAAGCCCTA 834 Query 907 TTTGCAGATGAACCAGTTGTGGTTGCACGGCCAGAAGATGTGAGGTTTGCTGC-TGCGCC 965 ||||| ||||| ||||| ||| ||||||||||||||||||||||||||||| | |||||| Sbjct 835 TTTGCTGATGAGCCAGTCGTGATTGCACGGCCAGAAGATGTGAGGTTTGCT-CATGCGCC 893 Query 966 TTTCGATGAAATCCACCAAGACTGATTCT 994 ||| ||||||||||||||||||||| ||| Sbjct 894 TTTTGATGAAATCCACCAAGACTGAATCT 922 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50550987942 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5