BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G04870.1 Length=1395 Score E Sequences producing significant alignments: (Bits) Value Ahg895553 jgi|Araly1|895553|Al_scaffold_0006_3549 1504 0.0 > Ahg895553 jgi|Araly1|895553|Al_scaffold_0006_3549 Length=1023 Score = 1504 bits (814), Expect = 0.0 Identities = 966/1036 (93%), Gaps = 23/1036 (2%) Strand=Plus/Plus Query 140 ATGGCGATTTACAGATCTCTAAGAAAGCTAGTTGAAATCAATCACCGGAAAACAAGACCA 199 |||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| Sbjct 1 ATGGCGATTTACAGATCTCTGAGAAAGCTAATTGAAATCAATCACCGGAAAACTAGACCA 60 Query 200 TTCTTCACCGCCGCTA------CA--G-CTTCCGGCGGAACCGTTTCTCTGACT-CCACC 249 |||||||||||||| | || | |||||||||||||||||||||| | | ||||| Sbjct 61 TTCTTCACCGCCGCCACCGCCGCATCGCCTTCCGGCGGAACCGTTTCTCTTA-TCCCACC 119 Query 250 GCAGTTTTCGCCGTTGTTCCCACATTTCTCACACCGTTTATCTCCGCTTTCGAAATGGTT 309 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 120 GCAGTTTTCGCCGTTGTTCCCACATTTCTCACAGCGTTTATCTCCGCTTTCGAAATGGTT 179 Query 310 CGTTCCTCTTAATGGACCTCTCTTCTTATCTTCTCCTCCTTGGAAACTTCTCCAGTCTGC 369 |||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 180 CGTTCCTCTTCATGGACCTCTCTTCCTCTCTTCTCCTCCTTGGAAACTTCTCCAGTCTGC 239 Query 370 GACACCTTTGCACTGGCGCGGAAACGGCTCTGTTTTGAAAAAAGTCGAAGCTCTGAATCT 429 |||||||||||| ||||||||||| ||| || ||||||| || ||||||||||||||||| Sbjct 240 GACACCTTTGCATTGGCGCGGAAATGGCGCTATTTTGAAGAAGGTCGAAGCTCTGAATCT 299 Query 430 TAGATTGGATCGAATTAGAAGCAGAACTAGGTTTCCGAGACAGTTAGGGTTACAGTCTGT 489 ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct 300 TAGATTGGATCGAATTAGAAGTAGAACTAGGTTTCCTAGACATTTAGGGTTACAGTCTGT 359 Query 490 GGTACCAAACATATTGACGGTGGATCGCAACGATTCCAAGGAAGAAGATGGTGGAAAATT 549 |||| | | | |||||||||||||||||||| ||||||||||||||||| || | Sbjct 360 GGTA-C---C--A---ACGGTGGATCGCAACGATTCGAAGGAAGAAGATGGTGG--AA-T 407 Query 550 AGTCAAGAGTTTTGTTAATGTGCCGAATATGATATCAATGGCGAGATTAGTATCTGGTCC 609 | | ||||||||||||||||| || ||| ||||||||||||| |||||||| |||||||| Sbjct 408 ACTTAAGAGTTTTGTTAATGTCCCTAATTTGATATCAATGGCAAGATTAGTGTCTGGTCC 467 Query 610 TGTGCTTTGGTGGATGATCTCGAATGAGATGTATTCTTCTGCTTTCTTAGGGTTGGCTGT 669 || ||||||||||||||| ||||||||||||||| ||||||||||| |||| ||| |||| Sbjct 468 TGCGCTTTGGTGGATGATTTCGAATGAGATGTATACTTCTGCTTTCGTAGGCTTGACTGT 527 Query 670 TTCTGGAGCTAGTGATTGGTTAGATGGTTACGTGGCTCGGAGGATGAAGATTAACTCTGT 729 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 528 TTCTGGAGCTAGTGATTGGTTAGATGGTTACATGGCTCGGAGGATGAAGATTAATTCTGT 587 Query 730 GGTTGGCTCGTACCTTGATCCTCTTGCAGACAAGGTTCTTATCGGGTGTGTAGCAGTAGC 789 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 588 GGTTGGCTCTTACCTTGATCCTCTTGCAGACAAGGTTCTTATCGGGTGTGTCGCAGTAGC 647 Query 790 AATGGTGCAGAAGGATCTCTTACATCCTGGACTGGTTGGAATTGTGTTGTTACGGGATGT 849 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 648 AATGGTGCAGAAGGATCTCTTACATCCTGGACTGGTTGGAATTGTGTTGTTACGGGATGT 707 Query 850 TGCACTCGTTGGTGGTGCAGTTTACCTAAGGGCACTAAACTTGGACTGGAAGTGGAAAAC 909 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 708 TGCACTCGTTGGTGGTGCAGTTTACCTAAGGGCATTAAACTTGGACTGGAAGTGGAAAAA 767 Query 910 TTGGAGTGACTTCTTCAATCTAGATGGTTCAAGTCCTCAGAAAGTAGAACCATTGTTTAT 969 |||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||| Sbjct 768 TTGGAGTGACTTCTTCAACCTCGATGGTTCAAGCCCTCAGAAAGTAGAGCCATTGTTTAT 827 Query 970 AAGCAAGGTGAATACAGTTTTCCAGTTGACTCTAGTCGCTGGTGCAATACTTCAACCAGA 1029 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 828 AAGCAAGGTGAATACAGTTTTCCAGTTGGCTCTAGTCGCTGGTGCAATACTTCAACCCGA 887 Query 1030 GTTTGGGAATCCAGACACCCAGACATGGATCACTTATCTAAGCTGGTTAGTTGCTTCGAC 1089 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 888 GTTTGGGAATCCAGATACCCAGACATGGATCACTTATCTAAGCTGGTTAGTTGCTTCGAC 947 Query 1090 GACTATGGCTTCAACTGCAGCTTATGGTGTACAATACTGGAAGAAGAGACCTATATCTAT 1149 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 948 GACTATGGCTTCAACTGCAGCTTATGGGGTACAATACTGGAAGAAGAGACCTATCTCTAT 1007 Query 1150 GATTAAGAGATCATAG 1165 |||||||||||||||| Sbjct 1008 GATTAAGAGATCATAG 1023 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52145545405 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5