BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G04950.1 Length=1736 Score E Sequences producing significant alignments: (Bits) Value Ahg943269 jgi|Araly1|943269|scaffold_603813.1 2431 0.0 > Ahg943269 jgi|Araly1|943269|scaffold_603813.1 Length=1508 Score = 2431 bits (1316), Expect = 0.0 Identities = 1432/1488 (96%), Gaps = 7/1488 (0%) Strand=Plus/Plus Query 43 CCTCTTCGAAGATGAGC-GGTACGGTGAAGGATATCGTTTCAAAGGCGGAGCTTGATAAC 101 ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| Sbjct 14 CCTCTTCGAAGATGA-CTGGTACGGTGAAGGATATCGTTTCAAAGGCAGAGCTTGATAAC 72 Query 102 TTGCGCCAGAGCGGCGCACCAGTCGTGCTTCACTTCTGGGCTTCTTGGTGTGATGCTTCG 161 ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct 73 TTGCGCCAGAGCGGCGCACCAATCGTGCTTCACTTCTGGGCTTCTTGGTGTGACGCTTCG 132 Query 162 AAGCAGATGGATCAAGTTTTCTCTCATCTCGCTACTGATTTCCCTCGTGCTCACTTCTTT 221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 133 AAGCAGATGGATCAAGTTTTCTCTCATCTCGCTACTGATTTCCCTCGTGCTCACTTCTTT 192 Query 222 AGGGTTGAAGCTGAGGAACATCCTGAGATATCTGAGGCTTACTCTGTTGCTGCTGTGCCT 281 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 193 AGGGTAGAAGCTGAGGAACATCCTGAGATATCTGAGGCTTACTCTGTTGCTGCTGTGCCT 252 Query 282 TATTTCGTCTTCTTCAAGGATGGTAAAACTGTGGATACACTTGAGGGTGCAGATCCATCA 341 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 253 TATTTCGTCTTCTTCAAGGATGGCAAAACTGTGGATACACTTGAGGGTGCAGATCCATCA 312 Query 342 AGTTTAGCTAATAAGGTTGGCAAAGTTGCTGGTTCTAGTACTTCTGCGGAGCCTGCTGCT 401 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 313 AGTTTAGCTAATAAGGTAGGCAAAGTTGCTGGTTCTAGTACCTCTGCGGAGCCTGCTGCT 372 Query 402 CCTGCAAGCTTAGGGTTGGCTGCTGGGCCAACGATTCTTGAAACTGTGAAGGAGAATGCG 461 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 373 CCTGCAAGCTTAGGGTTGGCTGCAGGGCCAACGATTCTTGAAACTGTGAAGGAGAATGCG 432 Query 462 AAAGCTTCTTTACAAGACCGAGCTCAGCCTGTATCTACCGCCGATGCTCTCAAGAGCCGT 521 |||||| || |||||||||||||| |||||||||||||| |||| ||||||||||||| Sbjct 433 AAAGCTACTGTACAAGACCGAGCT---CCTGTATCTACCGCTGATGGTCTCAAGAGCCGT 489 Query 522 TTGGAAAAGCTCACTAATTCTCACCCTGTCATGTTATTCATGAAAGGTATTCCTGAAGAG 581 || ||||| |||||||||||||| ||||||||||||||||||||||||| |||||| ||| Sbjct 490 TTCGAAAAACTCACTAATTCTCAACCTGTCATGTTATTCATGAAAGGTAATCCTGAGGAG 549 Query 582 CCTAGGTGTGGGTTTAGCAGGAAAGTAGTTGACATTTTGAAAGAGGTTAACGTTGATTTT 641 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 550 CCTAGGTGTGGGTTTAGCAGGAAAGTAGTTGACATTTTGAAAGAGGAGAAGGTTGATTTT 609 Query 642 GGAAGTTTTGACATACTATCGGATAACGAAGTGCGAGAGGGTTTGAAGAAATTCTCTAAC 701 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 610 GGAAGTTTTGACATACTATCGGACAACGAAGTGCGAGAGGGTTTGAAGAAATTCTCTAAC 669 Query 702 TGGCCAACGTTTCCTCAGCTGTACTGCAACGGAGAGCTTCTTGGTGGAGCTGATATCGCA 761 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 670 TGGCCAACGTTTCCTCAGCTGTACTGCAACGGAGAGCTTCTTGGTGGAGCTGATATCGCA 729 Query 762 ATAGCGATGCACGAGAGCGGTGAACTAAAAGATGCTTTCAAAGATCTTGGGATCACGACA 821 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 730 ATAGCGATGCACGAGAGCGGTGAACTAAAAGATGCTTTCAAAGATCTTGGGATCATTACA 789 Query 822 GTTGGTTCAAAAGAAAGTCAGGATGAAGCTGGAAAAGGAGGAGGGGTTAGTTCAGGAAAC 881 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 790 GTTGGTTCAAAAGAAAGTCAGGATGAAGCTGGAAAAGGAGGAGGGGTAAGTTCAGGCAAC 849 Query 882 ACAGGCTTAAGTGAGACCCTCCGAGCTCGGCTCGAAGGTCTGGTCAATTCCAAACCAGTT 941 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 850 ACAGGCTTAAGCGAGACCCTCCGAGCTCGGCTCGAAGGTCTGGTCAATTCGAAACCAGTT 909 Query 942 ATGCTGTTCATGAAAGG-AAGACCAGAAGAACCAAAGTGTGGGTTCAGTGGGAAAGTGGT 1000 ||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||| Sbjct 910 ATGCTGTTCATGAAAGGGAA-ACCAGAAGAACCAAAGTGTGGGTTTAGTGGGAAAGTGGT 968 Query 1001 TGAAATCCTCAACCAAGAAAAAATCGAGTTTGGGAGTTTCGATATCCTCTTAGATGACGA 1060 |||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| || Sbjct 969 TGAAATTCTCAACCAAGAAAAAATCGAGTTTGGGAGTTTTGATATACTCTTAGATGATGA 1028 Query 1061 AGTTCGCCAAGGCCTTAAAGTGTATTCAAACTGGTCAAGCTATCCTCAGCTTTACGTGAA 1120 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1029 AGTTCGTCAAGGGCTTAAAGTGTATTCAAACTGGTCAAGCTATCCTCAGCTTTACGTGAA 1088 Query 1121 AGGCGAGCTTATGGGTGGATCAGACATTGTCTTGGAGATGCAAAAGAGCGGTGAGCTGAA 1180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1089 AGGCGAGCTTATGGGTGGATCAGACATTGTCTTGGAGATGCAAAAGAGCGGTGAGCTGAA 1148 Query 1181 AAAGGTCTTGACCGAGAAAGGGATCACTGGAGAACAGAGTCTTGAAGATAGATTGAAGGC 1240 |||||| ||| |||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 1149 AAAGGTTTTGTCCGAGAAAGGAATAACCGGAGAACAGAGTCTTGAAGATAGATTGAAGGC 1208 Query 1241 ACTGATCAATTCCTCGGAAGTAATGCTATTCATGAAAGGTTCACCAGATGAACCGAAATG 1300 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1209 GTTGATCAACTCCTCGGAAGTAATGCTTTTCATGAAAGGTTCACCAGATGAACCGAAATG 1268 Query 1301 CGGATTTAGCTCCAAAGTTGTGAAAGCATTGAGAGGAGAAAACGTGAGTTTCGGATCGTT 1360 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1269 CGGATTTAGCTCCAAAGTTGTGAAAGCACTGAGAGGAGAAAACGTGAGTTTCGGATCGTT 1328 Query 1361 TGATATCTTGACTGATGAAGAAGTAAGGCAAGGGATTAAGAATTTCTCAAACTGGCCAAC 1420 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1329 TGATATCTTGACCGATGAAGAAGTAAGGCAAGGGATTAAGAATTTCTCAAACTGGCCAAC 1388 Query 1421 TTTTCCTCAGCTATACTACAAAGGTGAGTTAATTGGAGGATGTGATATCATTATGGAGCT 1480 ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1389 ATTTCCTCAGCTTTACTATAAAGGTGAGTTAATTGGAGGATGTGATATCATTATGGAGCT 1448 Query 1481 AAGTGAGAGTGGTGATCTCAAAGCAACTCTATCCGAGTAAGTAATATA 1528 ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1449 AAGTGAGAGTGGTGATCTCAAAGCAACTCTATCTGAGTAAGTAATATA 1496 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65134318950 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5