BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G05020.2 Length=2364 Score E Sequences producing significant alignments: (Bits) Value Ahg943283 jgi|Araly1|943283|scaffold_603827.1 2579 0.0 Ahg492734 jgi|Araly1|492734|fgenesh2_kg.7__2167__AT4G21490.1 1441 0.0 Ahg480917 jgi|Araly1|480917|fgenesh2_kg.3__3618__AT2G20800.1 141 2e-32 > Ahg943283 jgi|Araly1|943283|scaffold_603827.1 Length=1793 Score = 2579 bits (1396), Expect = 0.0 Identities = 1511/1567 (96%), Gaps = 6/1567 (0%) Strand=Plus/Plus Query 110 TTGAATCGAACCAAGAGCGAAAATGAGAAATTTCAGTGTCTTCGAGAGATTCTCTAAAGC 169 |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1 TTGAATCGAACC-AGAGCGAAAATGAGAAATTTCAGTATCTTCGAGAGATTCTCTAAAGC 59 Query 170 TTTTAAAGATCATCCTTCTCTCACCAGGATTCTCGTCGTCTCCACGATCAGTGGTGGTGG 229 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TTTTCAAGATCATCCTTCTCTCACCAGGATTCTCGTCGTCTCCACGATCAGTGGTGGTGG 119 Query 230 ACTTATAGCGTATTCTGAGGCAAACGCATCTTATGGAGCAAATGGTGGTGCTGTTGTTGA 289 ||||||||| |||||||||||||||||||| |||||||| || |||| || | ||||||| Sbjct 120 ACTTATAGCTTATTCTGAGGCAAACGCATCCTATGGAGCGAACGGTGCTGGTATTGTTGA 179 Query 290 AACTGGAACCAAGAAGAAGAAGGTGGTGCTGCTCGGAACTGGATGGGCTGGAACTAGTTT 349 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 180 AACTGGAACCAAGAAGAAGAAGGTGGTGTTGCTCGGAACTGGATGGGCTGGAACTAGTTT 239 Query 350 CTTGAAGAATTTGAACAATTCTCAATATGAGGTTCAGATTATATCGCCTCGGAACTACTT 409 ||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 240 CTTGAAGAATTTGAATAATTCTCAATATGAGGTTCAGATTATATCACCTCGAAACTACTT 299 Query 410 TGCTTTCACTCCTTTACTACCTAGTGTTACTTGTGGAACTGTTGAAGCTCGTAGTGTTGT 469 |||||||||||| || |||||||||||||||||||||||||||||||||| || ||||| Sbjct 300 TGCTTTCACTCCCTTGTTACCTAGTGTTACTTGTGGAACTGTTGAAGCTCGCAGCGTTGT 359 Query 470 TGAGCCTATTCGAAACATTGGAAG--A-AAGAATGTTGATACTTCTTACTTGGAGGCAGA 526 |||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||| Sbjct 360 TGAGCCTATTCGAAACATTGGAAGAAAGAAGAATGTTGATACTTCTTACCTGGAGGCAGA 419 Query 527 ATGTTTCAAAATTGATCCAGCTAGCAAGAAGGTTTACTGCCGATCCAAACAAGGCCTTAG 586 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 420 ATGTTTCAAAATTGATCCAGCAAGCAAGAAAGTTTACTGCCGATCCAAACAAGGCCTTAG 479 Query 587 TTCAAATGGAAAGAAA-GAATTTTCTGTTGACTATGACTACCTTGTAATTGCTACTGGAG 645 |||||||||||| ||| ||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 480 TTCAAATGGAAA-AAAGGAATTTTCTGTTGACTATGACTATCTTGTAATTGCAACTGGAG 538 Query 646 CTCAGTCTAACACCTTTAACATACCCGGAGTGGAGGAGAACTGTCATTTTCTGAAAGAGG 705 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 539 CTCAGTCTAACACCTTTAACATACCCGGAGTGGAGGAAAACTGTCATTTTCTGAAAGAGG 598 Query 706 TTGAAGATGCTCAGAGAATCCGTAAAACTGTAATTGATTCCTTTGAGAAGGCAAGTCTAC 765 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 599 TTGAAGATGCTCAGAGAATCCGTAAAACTGTGATTGATTCCTTTGAGAAGGCAAGTCTAC 658 Query 766 CAGAACTAAGCGATGAAGAGAGAAAGAGAATCCTGCATTTTGTGGTTGTTGGTGGTGGGC 825 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 659 CAGAACTAAGCGATGAAGAGCGAAAGAGAATCCTGCATTTTGTGGTTGTTGGTGGTGGGC 718 Query 826 CAACAGGTGTTGAGTTTGCCGCTGAGCTACATGATTTTGTTACTGAGGATCTAGTCAGTC 885 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 719 CAACAGGTGTTGAGTTTGCCGCTGAGCTGCATGATTTTGTTACTGAGGATCTAGTCAGTC 778 Query 886 TCTATCCTAGAGCCAAGGGTTCAGTGCGAATCACGCTTCTGGAGGCCGCAGACCACATCC 945 | ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| Sbjct 779 TTTATCCTAGAGCCAAGGGTTCAGTACGAATCACACTTCTCGAGGCCGCAGACCACATCC 838 Query 946 TGACCATGTTTGACAAGAGAATCACTGAGTTTGCCGAAGAAAAGTTTAGCAGAGATGGAA 1005 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 TGACCATGTTTGACAAGAGAATCACTGAGTTTGCCGAAGAAAAGTTTAGCAGAGATGGAA 898 Query 1006 TTGATGTGAAACTTGGCTCGATGGTAACTAAAGTGAATGAGAAAGATATATCTGCTAAAA 1065 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 899 TTGATGTGAAACTTGGCTCTATGGTAACTAAAGTGAATGAGAAAGATATATCTGCTAAAA 958 Query 1066 CCAAAGGAGGAGAGGTTTCCTCGATTCCTTATGGAATGATTGTCTGGTCAACTGGTATTG 1125 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 959 CGAAAGGAGGAGAGGTTTCCTCTATTCCTTATGGAATGATTGTCTGGTCAACTGGTATTG 1018 Query 1126 GAACTCGTCCTGTGATAAAAGATTTTATGAAACAAATTGGTCAGGGTAATAGACGAGCTC 1185 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1019 GAACTCGTCCTGTGATAAAAGATTTTATGAAACAAATTGGTCAGGGTAATAGACGTGCTC 1078 Query 1186 TGGCAACTGATGAATGGCTTCGCGTAGAAGGAACTGATAATATATATGCCCTTGGTGATT 1245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 TGGCAACTGATGAATGGCTTCGCGTAGAAGGAACTGATAATATATATGCCCTTGGTGATT 1138 Query 1246 GCGCAACCATTAACCAGCGCAAAGTCATGGAAGATGTTTCTGCTATTTTTAGCAAAGCAG 1305 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 GTGCAACCATTAACCAGCGCAAAGTCATGGAAGATGTTTCTGCTATTTTTAGCAAAGCAG 1198 Query 1306 ACAAAGACAAGTCTGGGACACTGACTCTCAAAGAGTTCCAAGAAGCAATGGATGACATTT 1365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 ACAAAGACAAGTCTGGGACACTGACTCTCAAAGAGTTCCAAGAAGCAATGGATGACATTT 1258 Query 1366 GTGTTAGATACCCTCAAGTGGAGCTCTACTTGAAGAGTAAACGTATGCGTGGCATTGCAG 1425 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1259 GTGTTAGATACCCTCAAGTTGAGCTCTACTTGAAGAGTAAACGTATGCGTGGCATTGCAG 1318 Query 1426 ATCTTCTTAAAGAAGCCGAAACTGATGATGTATCTAAGAATAACATTGAACTGAAGATCG 1485 |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| Sbjct 1319 ATCTTCTTAAAGAAGCCGAAACTGATGATGTATCCAAGAAGAACATCGAACTGAAGATCG 1378 Query 1486 AAGAGTTCAAATCGGCTCTATCTCAGGTTGACTCACAAGTGAAGTTTCTTCCAGCTACTG 1545 |||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 1379 AAGAATTCAAATCAGCTCTTTCTCAGGTTGACTCACAAGTGAAGTTTCTTCCAGCTACAG 1438 Query 1546 CACAGGTTGCTGCGCAGCAAGGTGCTTACCTAGCTAAATGCTTTGACCGTATGGAAGAGT 1605 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | Sbjct 1439 CACAGGTTGCTGCGCAGCAAGGTGCTTACCTAGCTAAATGCTTTGATCGCATGGAAGATT 1498 Query 1606 GTGAGAAGAGTCCAGAAGGTCCCATTAGGATGAGAGGAGAAGGTCGTCACCGTTTCCGCC 1665 | ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1499 GCGAGAAGAATCCAGAAGGTCCCATTAGGATGAGAGGAGAAGGTCGTCATCGTTTCCGCC 1558 Query 1666 CCTTCAG 1672 ||||||| Sbjct 1559 CCTTCAG 1565 Score = 363 bits (196), Expect = 5e-99 Identities = 208/214 (97%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 1782 AGGTATAGGCATCTGGGACAATTTGCACCACTGGGAGGGGAGCAAACGGCAGCACAACTT 1841 ||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1564 AGGTACAGACATTTGGGACAATTTGCACCACTGGGAGGGGAGCAAACGGCAGCACAACTT 1623 Query 1842 CCAGGAGATTGGGTTTCTATTGGACACAGCAGCCAGTGGCTCTGGTACTCCGTCTACGCC 1901 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 1624 CCAGGAGATTGGGTTTCTATTGGACAAAGCAGCCAGTGGCTCTGGTATTCCGTCTACGCC 1683 Query 1902 AGTAAGCAAGTGAGCTGGCGTACGAGAGTGCTTGTGGTTTCAGATTGGATGAGGCGTTTC 1961 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1684 AGTAAGCAAGTGAGCTGGCGTACGAGAGTGCTTGTGGTTTCAGATTGGATGAGGCGTTTC 1743 Query 1962 ATCTTTGGTAGAGATTCCAGTAGCATCTGATTTT 1995 ||||||||||| |||||||||||||||||||||| Sbjct 1744 ATCTTTGGTAGGGATTCCAGTAGCATCTGATTTT 1777 > Ahg492734 jgi|Araly1|492734|fgenesh2_kg.7__2167__AT4G21490.1 Length=1650 Score = 1441 bits (780), Expect = 0.0 Identities = 1250/1472 (85%), Gaps = 51/1472 (3%) Strand=Plus/Plus Query 222 GGTGGTGGACTTATAG-CGTATTCTGAGGCAAACGCATCTTATGGAGCAAATGGTGGTGC 280 ||||| |||||||||| | || ||||||||||| ||||| ||| ||| || || Sbjct 1 GGTGGAGGACTTATAGTC-TACTCTGAGGCAAATGCATCATAT--AGC-AA---CAATG- 52 Query 281 TGTTGTTGAAACTGGAACCAAG-AAGAAGAAGGTGGTGCTGCTCGGAACTGGATGGGCTG 339 | ||||||||||| |||| || ||||| || || ||| ||||||||||||||||||||| Sbjct 53 -G-TGTTGAAACTGAAACC-AGAAAGAAAAAAGTAGTGTTGCTCGGAACTGGATGGGCTG 109 Query 340 GAACTAGTTTCTTGAAGAATTTGAACAATTC-TCAATATGAGGTTCAGATTATATCGCCT 398 || | ||||||||||||| | |||| || || || |||||||||||| ||||||||||| Sbjct 110 GAGCAAGTTTCTTGAAGACTCTGAATAACTCTTC-TTATGAGGTTCAGGTTATATCGCCT 168 Query 399 CGGAACTACTTTGCTTTCACTCCTTTACTACCTAGTGTTACTTGTGGAACTGTTGAAGCT 458 || |||||||||||||||||||| || |||||||||||||||| ||||||||||||||| Sbjct 169 CGAAACTACTTTGCTTTCACTCCCTTGTTACCTAGTGTTACTTGCGGAACTGTTGAAGCT 228 Query 459 CGTAGTGTTGTTGAGCCTATTCGAAACATTGGAAGAAAGAATGTTGATACT-TCTTACTT 517 || ||||||||||| ||||| || ||||||||||||||||||||||| | | |||| ||| Sbjct 229 CGCAGTGTTGTTGAACCTATCCGCAACATTGGAAGAAAGAATGTTGAGA-TGTCTTTCTT 287 Query 518 GGAGGCAGAATGT-TTCAAAATTGATCCAGC-TAGCAAGAAGGTTTACTGCCGATCCAAA 575 ||||||||||||| || ||||||||||| | |||||||| |||||||| ||||||||| Sbjct 288 GGAGGCAGAATGTGTT-AAAATTGATCC-TCGAAGCAAGAAAGTTTACTGTCGATCCAAA 345 Query 576 CAAGGCCTTAGTTCAAATGGAAAGAAAGAATTTTCTGTTGACTATGACTACCTTGTAATT 635 |||||| | | ||| || || |||| ||||||| |||||||||||| |||||||||||| Sbjct 346 CAAGGCGTGAATTCGAACGGGAAGAGAGAATTTGATGTTGACTATGATTACCTTGTAATT 405 Query 636 GCTACTGGAGCTCAGTCTAACACCTTTAACATACCCGGAGTGGAGGAGAACTGTCATTTT 695 ||||||||||||||||| ||||| ||||| || || || |||||||||||||||||||| Sbjct 406 GCTACTGGAGCTCAGTCAAACACATTTAATATTCCAGGGGTGGAGGAGAACTGTCATTTC 465 Query 696 CTGAAAGAGGTTGAAGATGCTCAGAGAATCCGTAAAACTGTAATTGATTCCTTTGAGAAG 755 || ||||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||| Sbjct 466 CTCAAAGAGGTTGAAGATGCACAGAGAATCCGTAGCACTGTCATTGATTCATTTGAGAAG 525 Query 756 GCAAGTCTACCAGAACTAAGCGATGAAGAGAGAAAGAGAATCCTGCATTTTGTGGTTGTT 815 |||||| |||| | ||||| ||| ||||||||||||||||| || |||||||| |||||| Sbjct 526 GCAAGTTTACCGGGACTAAACGAAGAAGAGAGAAAGAGAATGCTACATTTTGTAGTTGTT 585 Query 816 GGTGGTGGGCCAACAGGTGTTGAGTTTGCCGCTGAGCTACATGATTTTGTT-ACTGAGGA 874 |||||||| ||||| |||||||||||||| ||||||| |||||||||||| || ||||| Sbjct 586 GGTGGTGGACCAACCGGTGTTGAGTTTGCTTCTGAGCTTCATGATTTTGTTAAC-GAGGA 644 Query 875 TCTAGTCAGTCTCTATCCTAGAGCCAAG-GGTTCAGTGCGA-ATCACGCTTCTGGAGGCC 932 | |||||| |||||||| | ||||||| || ||||| | ||||| || || ||||| Sbjct 645 TTTAGTCAAACTCTATCCCAAAGCCAAGAACTT-AGTGC-AGATCACTCTGCTAGAGGCT 702 Query 933 GCAGACCACATCCTGACCATGTTTGACAAGAGAATCACTGAGTTTGCCGAAGAAAAGTTT 992 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 703 GCAGACCACATCCTGACCATGTTTGACAAGAGAATCACTGAGTTTGCTGAAGAAAAGTTT 762 Query 993 AGC-AGAGATGGAATTGATGTGAAACTTGGCT-CGATGGTAA-CTAAAGTGAATGAGAAA 1049 | | |||||||| |||||||||||| |||| | | ||||| | ||||||||||| || Sbjct 763 A-CTAGAGATGGTATTGATGTGAAA-TTGGGTTCTATGGTGGTC-AAAGTGAATGATAAG 819 Query 1050 GATATATCTGCTAAAACCAAAGGAGGAGAGGTTTCCT-CGATTCCTTATGGAATGATTGT 1108 || || |||||||||||||||||||||||||| || | | ||||||||||||||||| || Sbjct 820 GAAATTTCTGCTAAAACCAAAGGAGGAGAGGTCTC-TACTATTCCTTATGGAATGATCGT 878 Query 1109 CTGGTCAACTGGTATTGGAACTCGTCCTGTGATAAAAGATTTTATGAAACAAATTGGTCA 1168 ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 879 TTGGTCAACTGGTATTGGGACTCGTCCTGTGATCAAAGATTTTATGAAACAAATTGGTCA 938 Query 1169 GGGTAATAGACGAGCTCTGGCAACTGATGAATGGCTTCGCGTAGAAGGAACTGATAATAT 1228 ||| |||||||| ||| | || || |||||||||||||| || |||||| |||||| || Sbjct 939 GGGAAATAGACGTGCTTTAGCTACCGATGAATGGCTTCGTGTTGAAGGATGTGATAACAT 998 Query 1229 ATATGCCCTTGGTGATTGCGCAACCATTAACCAGCGCAAAGTCATGGAAGATGTTTCTGC 1288 |||||| ||||||||||||||||| || |||||| | |||||||||||||| | |||| Sbjct 999 ATATGCACTTGGTGATTGCGCAACAATCAACCAGAGAAAAGTCATGGAAGACATAGCTGC 1058 Query 1289 TATTTTTA-GCAAAGCAGACAAAGACAAGTCTGGGACACTGACTCTCAAAGAGTTCCAAG 1347 ||| || | | |||||||| || || || || || |||||||| | ||||| || |||| Sbjct 1059 TATATTCAAG-AAAGCAGATAAGGAAAATTCAGGAACACTGACAATGAAAGAATTTCAAG 1117 Query 1348 AAGCAATGGATGACATTTGTGTTAGATACCCTCAAGTGGAGCTCTACTTGAAGAGTAAAC 1407 ||| ||||| |||||| |||| |||||||||||||||| | |||||||||||||||||| Sbjct 1118 AAGTAATGGGTGACATATGTGATAGATACCCTCAAGTGCAACTCTACTTGAAGAGTAAAG 1177 Query 1408 GTATGCGTGGCATTGCAGATCTTCTTAAAGAAGC-CGAAACTGATGA-TG-TATCTAAGA 1464 |||||| ||||||| | |||||||| |||||||| | || |||| || || | || || | Sbjct 1178 GTATGCATGGCATTACCGATCTTCTAAAAGAAGCAC-AAGCTGA-GAATGGT-TCCAATA 1234 Query 1465 A-TAACATTGAACT-GAAGATCGAAGAG-TTCAAATCGGCTCTATCTCAGGTTGACTCAC 1521 | | | | ||||| || || ||||| || ||||| ||||| | ||| |||||||||| Sbjct 1235 AGTC-CGTCGAACTCGAT-ATAGAAGAACTT-AAATCAGCTCTTTGTCAAGTTGACTCAC 1291 Query 1522 AAGTGAAGTTTCTTCCAGCTACTGCACAGGTTGCTGCGCAGCAAGGTGCTTACCTAGCTA 1581 |||||||| ||||||||||||| | |||||| ||||| ||||||||| ||||||| || | Sbjct 1292 AAGTGAAGCTTCTTCCAGCTACAGGACAGGTCGCTGCTCAGCAAGGTACTTACCTTGCAA 1351 Query 1582 AATGCTTTGACCGTATGGAAG-AGTGTGAGAAGAGTCCAGAAGGTCCCATTAGGATGAGA 1640 |||||||||| |||||||||| | || ||||||| ||| ||||||||||||||||| ||| Sbjct 1352 AATGCTTTGATCGTATGGAAGTA-TGCGAGAAGAATCCTGAAGGTCCCATTAGGATTAGA 1410 Query 1641 GGAGAAGGTCGTCACCGTTTCCGCCCCTTCAG 1672 |||||||| ||||| |||||||| |||||||| Sbjct 1411 GGAGAAGGCCGTCATCGTTTCCGTCCCTTCAG 1442 > Ahg480917 jgi|Araly1|480917|fgenesh2_kg.3__3618__AT2G20800.1 Length=1790 Score = 141 bits (76), Expect = 2e-32 Identities = 153/190 (81%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 1803 TTTGCACCACTGGGAGGGGAGCAAACGGCAGCACAACTTCCAGGAGATTGGGTTTCTATT 1862 ||||| || ||||||||||| || || |||||| |||| ||||| |||||||| || ||| Sbjct 1602 TTTGCTCCGCTGGGAGGGGAACAGACAGCAGCAGAACTGCCAGGGGATTGGGTCTCCATT 1661 Query 1863 GGACACAGCAGCCAGTGGCTCTGGTACTCCGTCTACGCCAGTAAGCAAGTGAGCTGGCGT 1922 ||||||||||||||||||||||||||||| ||||||||||| || | || |||||||| Sbjct 1662 GGACACAGCAGCCAGTGGCTCTGGTACTCTGTCTACGCCAGCAAACTGGTAAGCTGGCGC 1721 Query 1923 ACGAG-AGTGCTTGTGGTTTCAGATTGGA-T-GAGGCGTTTCATCTTTGGTAGAGATTCC 1979 || || | |||| || | || ||||||| | || || ||| ||||||| | || || Sbjct 1722 ACAAGGA-TGCTCGTCATCTCTGATTGGACTCGACGC-TTTG-TCTTTGGCCGTGACTCT 1778 Query 1980 AGTAGCATCT 1989 || ||||||| Sbjct 1779 AGCAGCATCT 1788 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89054992810 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5