BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05090.1
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490158 jgi|Araly1|490158|fgenesh2_kg.6__3292__AT4G05090.1 1914 0.0
> Ahg490158 jgi|Araly1|490158|fgenesh2_kg.6__3292__AT4G05090.1
Length=1240
Score = 1914 bits (1036), Expect = 0.0
Identities = 1184/1254 (94%), Gaps = 16/1254 (1%)
Strand=Plus/Plus
Query 53 AAACCGGTTTAATTTCACCGGTTTACCTTCCGCCGTAGATATCAGCCGCAATGTACATTC 112
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACCGGTTTAATTCCACCGGTTTACCTTCCGCCGTAGATATCAGCCGCAATGTACATTC 60
Query 113 TCGACACCGGAGCTCGATTCTCCGCCGTCAGATTCTCACCGGTATTCAATCCTCCTCCAA 172
|||||||||||||||||||||||||||||||||||||||| | | ||||| |
Sbjct 61 TCGACACCGGAGCTCGATTCTCCGCCGTCAGATTCTCACC-----T---T-CTCCT---A 108
Query 173 CATCTCTCCGTAGACGATACTTCATCGTAAGAGCTAATCTTCCATTCCCAAAGCATCAAG 232
|| ||||||| ||||||||||||||||||||| |||||||||| || || ||||||||||
Sbjct 109 CACCTCTCCGCAGACGATACTTCATCGTAAGAACTAATCTTCCGTTTCCGAAGCATCAAG 168
Query 233 CTAAGTATCATAAAGAGCTTGAGGTCGCCATTGATGCTGTTGATCGAGCTTGTCGTCTCT 292
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 169 CTAAGTATCATAAAGAGCTTGAGGTCGCCATTGATGCTGTTGATAGAGCTTGTCGTCTCT 228
Query 293 GTGTTGATGTCAAAAGATCTCTTTTTTCTTCTAAAGAGAAGATTGTTGAGAAGAATGATC 352
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 229 GTGTTGATGTCAAAAGATCGCTTTTTTCTTCTAAAGAGAAGATTGTTGAGAAGAATGATC 288
Query 353 AAACTCCAGTTACAATTGCAGATTTTGGAGTTCAAGCTTTAGTCAGCTTGGAGCTTTCGA 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 AAACTCCAGTTACAATTGCAGATTTTGGAGTTCAAGCTTTAGTCAGCTTGGAGCTTTCGA 348
Query 413 AATTGTTTCCTTCAATACCATTAGTGGCTGAGGAAGACTCTCATTTTGTGCGTGCTAATA 472
|| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 349 AAGTGTTTCCTTCAATACCTTTGGTGGCTGAGGAAGACTCTCATTTTGTGCGTGCTAATA 408
Query 473 ACCTTGTAAGCTCTGTGGTAAGTGAAGTCAAATCAAAAGCAAGCATTGGAGACAATCACT 532
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 409 ACCTTGTAAGCTCTGTAGTAAGTGAAGTCAAATCAAAAGCAAGCATTGGAGACAATGAGT 468
Query 533 TGTCTGATGCTGATGTACTTGAAGCAATTGATAGAGGTGGCAAAGATGCTTACACGTTTT 592
|||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||
Sbjct 469 TGTCTGATGCTGATGTACTTGAAGCAATTGATAGAGGTGGAAAAGGTGCTTACGCGTTTT 528
Query 593 GCAACAAACCAGCTACTTATTGGGTTTTGGATCCAATTGATGGCACCAGGGGATTTCTTA 652
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 529 GCAACAAACCAGCTACTTATTGGGTTTTGGATCCAATTGATGGCACAAGGGGGTTTCTTA 588
Query 653 AAGGAGATGAGGCTTTATATGTGGTAGGATTGGCCCTTGTTGTAGATAATGAAATTGTGC 712
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 AAGGAGATGACGCTTTATATGTGGTAGGATTGGCCCTTGTTGTAGATAATGAAATTGTGC 648
Query 713 TAGGAGTCATGGGTTGTCCAAACTGGCCAGGAGAT-TCTTCAGATGGATCTACTGGAACC 771
||||||||||||| |||||||||||||||| ||| | |||||||||||| || ||||||
Sbjct 649 TAGGAGTCATGGGCTGTCCAAACTGGCCAGAAGAAAT-TTCAGATGGATCCACCGGAACC 707
Query 772 CTAATGCTCTCGCATATAGGCTGTGGAACGTGGACCAAGAAGTTACAAAATGTCTCTGGC 831
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 708 CTAATGCTCTCGCATATTGGCTGTGGAACGTGGACCAAGAGGTTACAAAATGTCTCTGGC 767
Query 832 AATGTAGCCGGTGATTGGATAAGGTGTTTCGTTGATGCTTGTGTTTTAATGAACAAAGCA 891
|| ||| ||||||| |||| ||||||||| |||||||| |||||||||||||||||||||
Sbjct 768 AAAGTAACCGGTGACTGGACAAGGTGTTTTGTTGATGCCTGTGTTTTAATGAACAAAGCA 827
Query 892 AGATTTTGTATACAAGAAAGCCAAACCTGGGAATCACTTCCTCTCTCTGGTTTCTTCGAC 951
|| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 828 AGGTTTTGTATACAAGAAAGCCAAATCTGGGAATCGCTTCCTCTCTCTGGTTTCTTCGAC 887
Query 952 GCAAGTACT-GTTTCAGAGGACTTAAAACATAAAGAGATTCTTCTTTTGCCCACATGTTG 1010
|||| || | |||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 888 GCAAATA-TAGTTTTAGAGGACTTACAACATAAAGAGATTCTTCTTTTGCCCACATGTTG 946
Query 1011 TGGAAGTTTGTGCAAGTATCTGATGGTAGCTTCTGGCAGAGCATCAGTTTTTCTTCTCCG 1070
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 947 TGGAAGTTTGTGCAAGTATCTGATGGTAGCTTCCGGTAGAGCATCAGTTTTCCTTCTCCG 1006
Query 1071 AGCCAAAACTCAGAGAACAATAAAGTCGTGGGATCATGCTGTTGGGATCATATGTGTACA 1130
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1007 AGCCAAAACTCAGCGAACCATAAAGTCGTGGGATCATGCTGTTGGGATCATATGTGTTCA 1066
Query 1131 TGAAGCTGGAGGAAAGGTAACAGATTGGGAAGGAGATGAAATAAATTTGGAGGAAGATCA 1190
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1067 TGAAGCCGGAGGAAAGGTAACAGATTGGGAAGGAGATGAAATCAATTTGGAGGAAGATCA 1126
Query 1191 ATCAGAAAGGAGGCTCATTTTTCCGGCGGGCGGTGTTGTAGTAAGCAACGGAAGTTTACA 1250
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||
Sbjct 1127 ATCAGAAAGGAGGCTCATTTTTCCCGCGGGTGGTGTTGTAGTAAGCAACGGAAGTCTACA 1186
Query 1251 TAATCAGATTCTTGAGATGATCTCTTCTGCTTCACCAACTCTTTGATTTATGAC 1304
|||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 1187 TAATCAGATTCTTGAGATGATCACTTCTACTTCACCAACTTTTTGATTTATGAC 1240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53516794225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5