BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G05150.1 Length=1668 Score E Sequences producing significant alignments: (Bits) Value Ahg490165 jgi|Araly1|490165|fgenesh2_kg.6__3299__AT4G05150.1 2414 0.0 > Ahg490165 jgi|Araly1|490165|fgenesh2_kg.6__3299__AT4G05150.1 Length=1602 Score = 2414 bits (1307), Expect = 0.0 Identities = 1526/1628 (94%), Gaps = 29/1628 (2%) Strand=Plus/Plus Query 18 aaaaacaaaaaTCCCCAAATTACCAAAATCCTCGGCGACAAagaggagagatagagagag 77 ||| ||||||||||||||||||||||||||||||||||| || | ||| | |||||||| Sbjct 1 AAACACAAAAATCCCCAAATTACCAAAATCCTCGGCGAC-AA-A-GAG-G--AGAGAGAG 54 Query 78 agaaagagGCGAAAATAATGGCGTCGATCCCTCCGCCGGAGCTTGACAACGACTCACTGG 137 || ||| |||||||||||| ||||||| |||||||||||| |||||||||||||||| Sbjct 55 AG--AGA---GAAAATAATGGCTTCGATCCTTCCGCCGGAGCTGGACAACGACTCACTGG 109 Query 138 CGTCATCGCCGAGATCGGAGTACGATAGTCAGCCACGCGTACGGTTCATGTGTACTTTTG 197 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 110 CATCATCGCCGAGATCGGAGTACGATAGTCAGCCACGTGTACGGTTCATGTGTACTTTCG 169 Query 198 GAGGAAGGATCTTGCCACGTCCGCCGGATAATCAGCTCTGTTACGTCGGCGGCGATAATC 257 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 170 GAGGAAGGATCTTGCCTCGTCCGCCGGATAATCAGCTCTGTTACGTCGGCGGCGATAATC 229 Query 258 GCATGGTCGCTGTTCATCGTCACACTACTTTCGCCTCTCTCCTTAGTAAACTTGCTAAAC 317 | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 230 GTATGGTCGCTGTTCATCGTCACACTACTTTTGCTTCTCTCCTTAGTAAACTTGCTAAAC 289 Query 318 TCTCCGGTAAAAGCAACATAAGCGTGAAGTACCAGCTACCAAACGAAGATCTTGACGCGT 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 290 TCTCCGGTAAAAGCAACATAAGCGTGAAGTACCAGCTACCAAACGAAGATCTTGACGCGT 349 Query 378 TGATTTCCGTATCAACGGACGAAGATGTAGAGAACATGATGGACGAATACGACCGCGTCG 437 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 350 TGATTTCCGTATCAACGGACGAAGATGTAGAGAACATGATGGACGAGTACGACCGCGTCG 409 Query 438 CACAGAATCAAAACCCACGCGCCTCTCGTCTTCGTCTTTTTCTCTTCACCAAAAACGTCG 497 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 410 CACAGAATCAAAACCCACGCGCCTCTCGTCTTCGTCTCTTTCTCTTCACCAAAAACGTCG 469 Query 498 CCGGAGAAGAAGATAACGATAGTCGAGCTAGCAGTATCAGCTCTCTCCTCGATAGCTCTG 557 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 470 ACGGAGAAGAAGATAACGATAGTCGAGCTAGCAGTATCAGTTCTCTCCTCGATAGCTCCG 529 Query 558 TTAATCGGGAGCAATGGTTCCTCGACGCTCTTAACCTCGGTTCTTCCGCCGCCGCAACCG 617 ||||||| ||||| ||||||||||| ||||| || ||||||||||||||||||||||||| Sbjct 530 TTAATCGAGAGCAGTGGTTCCTCGATGCTCTCAATCTCGGTTCTTCCGCCGCCGCAACCG 589 Query 618 CGG-TATCTAACGGTGGGTCCGGTAGAGTCTTT-GAGCGAGTTAGATCTGAAGTCTCGTC 675 | | | |||||||| || ||||||||||| ||| ||||| |||||||||||||||||||| Sbjct 590 CAGCT-TCTAACGGCGGATCCGGTAGAGT-TTTCGAGCGCGTTAGATCTGAAGTCTCGTC 647 Query 676 GATTGTTTCTGAAGTTCCTGATTATCTCTTTGGATTGGATAATTTCGATGAAACTGCTCC 735 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 648 GATTGTTTCTGAAGTTCCTGATTATCTCTTTGGATTGGATAATTTTGATGAAACTGCTCC 707 Query 736 GCCGCATGAGCTTCGTGATCGTGATCCGAGAGCTAAGATCCAACGAGAAGTCTCGACGCT 795 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 708 GCCGCATGAGCTTCGTGATCGTGATCCGAGAGCTAAGATTCAACGAGAAGTCTCGACGCT 767 Query 796 TTCGGATCCTGGTTCGCCTCGTCGCGATGTTCCTTCGCCGTATGGTTCGACGTCTTCGGC 855 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 768 TTCGGATCCTGGTTCGCCTCGTCGCGATGTTCCTTCGCCGTATGGTTCTACGTCTTCGGC 827 Query 856 TCCTGTGATGCGAATATCTACACCGGAACTTCCACCACCAGTTTTTATTAAACCGGAAAG 915 |||||||||||||| |||||||||||||||||||||||| ||||| | |||||| ||||| Sbjct 828 TCCTGTGATGCGAACATCTACACCGGAACTTCCACCACCGGTTTTGACTAAACCAGAAAG 887 Query 916 TCCAGAACCGGTTTCGACTCCGAAATCCAATCCTCAACCGGAACAAGTAATGCAACAGAG 975 |||||||||||||||||| || ||||| || ||||||||||||||||||| ||||| || Sbjct 888 TCCAGAACCGGTTTCGACCCCTAAATCTGATTCTCAACCGGAACAAGTAATTCAACAAAG 947 Query 976 TAATCTCCCGGTTAACTCGCAATGGCAATATGCCCCTGGCCCAGGCCAACAGGTTCATTA 1035 |||||||||||||||| ||||||||||||| ||||| |||||||||| |||||||||||| Sbjct 948 TAATCTCCCGGTTAACACGCAATGGCAATACGCCCCAGGCCCAGGCCCACAGGTTCATTA 1007 Query 1036 CCAGGGTCATACCATTCACCAATCACCGGTTTATTACGTTCCTGGTTCGGTTCCGGGTAA 1095 |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 1008 CCAGGGTCATACCATTCACCAAACACCGGTTTATTACGTTCCTGGTTCTGTTCCGGGTAA 1067 Query 1096 TCATATGGTCCAGCAAGGAAATCATATGGTTCAACCGGGTAATCATATGGTACAACCGGT 1155 | ||||||| || | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1068 TAATATGGTTCAACCGGGAAATCATATGGTTCAACCGGGTAATCATATGGTACAACCGGT 1127 Query 1156 TCAAATGCCGGGTCAGTATCTTCAACAATACCATCATGTACCAATGGGATACCACCAACC 1215 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1128 TCAAATGCAGGGTCAGTATCTTCAACAATACCATCATGTACCAATGGGATACCACCAACC 1187 Query 1216 TCAGACTCATCAGATGGCTGGTCCGGGTCAAGTATATGGTGGAACGGTTAGGCCGGTTAT 1275 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1188 TCAGACTCATCAGATGGCTGGTCCGGGTCAAGTATATGGTGGAGCGGTTAGGCCGGTTAT 1247 Query 1276 GATGGCAGTTGATGGAATGAACCGGACGGGTTATTATGGAATGAAAACACCCGGTCCGGT 1335 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1248 GATGGCAGTGGATGGAATGAACCGGACGGGTTATTATGGAATGAAAACACCCGGTCCGGT 1307 Query 1336 TCAAATGTATCAGCATCACACTGGTATGGTTGTTCCTGGTGTAGAAGAACAACAACAATA 1395 |||||||||||| || ||| ||||||||||||||||||||||||||||||||||| || Sbjct 1308 TCAAATGTATCATCAGCACCCTGGTATGGTTGTTCCTGGTGTAGAAGAACAACAA---TA 1364 Query 1396 CAGAACCGAAACGGATTCGGATACGGGTCGGGCTTCTTAGCTGTTTGAAGAAGAAATATG 1455 ||||||||| |||||||||||| |||||||||||||||||||| |||||||| | |||| Sbjct 1365 CAGAACCGAGACGGATTCGGATCCGGGTCGGGCTTCTTAGCTGGTTGAAGAA-A--TATG 1421 Query 1456 AAAAATTATCACATCCGGGGTTTTCGTCTTTTCATTGGAGTCGTTCTTATTCGTTACtgt 1515 |||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 1422 AAAAATAATCACATCCGGGGTTTTCGTATTTTCATTGGAGTCGTACTTATTCGTTACTGT 1481 Query 1516 gtgaactgtgtattattttttgtttt-acttttgtaaaatttatttttgtgtgtaataat 1574 |||||||||||| ||||||||||||| ||| || || ||| |||||| ||||| |||| Sbjct 1482 GTGAACTGTGTAATATTTTTTGTTTTTACTCTT-TATTATT-ATTTTT-TGTGTG-TAAT 1537 Query 1575 tttgtattaCAAAATATAATGAACAGTAAAACCCAATAATAATAACATTATAATCTATCA 1634 ||||||||||||| | | |||||||||||||||||||||||| ||||||||||| ||| Sbjct 1538 TTTGTATTACAAACTGTGATGAACAGTAAAACCCAATAATAA---CATTATAATCTGTCA 1594 Query 1635 ATAGTGAA 1642 ||| |||| Sbjct 1595 ATAATGAA 1602 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62544182290 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5