BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G05180.1 Length=1037 Score E Sequences producing significant alignments: (Bits) Value Ahg490167 jgi|Araly1|490167|fgenesh2_kg.6__3301__AT4G05180.1 1325 0.0 Ahg492755 jgi|Araly1|492755|fgenesh2_kg.7__2188__AT4G21280.2 442 2e-123 > Ahg490167 jgi|Araly1|490167|fgenesh2_kg.6__3301__AT4G05180.1 Length=893 Score = 1325 bits (717), Expect = 0.0 Identities = 840/898 (94%), Gaps = 14/898 (2%) Strand=Plus/Plus Query 1 GTCACATAACCAAACACCAAAAATTATAACTCAAC-A-CTTCACTAATC-AATTATTCAA 57 ||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||| Sbjct 1 GTCACATAACCAAACACCAAAAATTATAACTCAACAATCTTCACTAATCAAATTATTCAA 60 Query 58 AGCAGATaaaaaaaaaaTGGCTCAAGCAGTGACTTCGATGGCTGGCTTACGTGGAGCATC 117 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 61 AGCAGAT---AAAAAAATGGCTCAAGCAGTGACTTCGATGGCTGGCTTACGTGGCGCATC 117 Query 118 TCAGGCTGTCCTTGAAGGAAGTTTACAGATCAACGGCTCAAACCGTTTGAACATCTCAAG 177 |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 118 TCAGGCTGTCCTTGAAGGAAGTCTACAGATCAATGGCTCAAACCGTTTGAACATCTCAAG 177 Query 178 AGTCTCGGTTGGGTCTCAGAGAACCGGACTTGTGATCAGGGCTCAGCAGAACGTGTCAGT 237 |||| ||||||| ||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 178 AGTCACGGTTGGATCTCAAAGAACCGGACTTGTGATCAGGGCTCAGCAGAACGAGTCAGT 237 Query 238 ACCAGAAAGTAGTCGCCGGTCAGTGATTGGACTCGTGGCGGCTGGTTTAGCCGGTGGTTC 297 |||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||| Sbjct 238 ACCAGAAAGTAGTCGCAGGTCAGTGATCGGGCTCGTGGCGGCTGGTTTAGCCGGTGGTTC 297 Query 298 ATTCGTTAAAGCTGTTTTCGCCGAAGCTATTCCGATCAAAGTTGGTGGTCCTCCACTTCC 357 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 298 ATTCGTTAAAGCTGTTTTCGCCGAAGCTATTCCGATCAAAGTTGGTCCTCCTCCACCTCC 357 Query 358 TTCCGGTGGCCTACCTGGAACAGATAACTCAGACCAAGCAAGAGACTTTTCATTGGCATT 417 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 358 TTCCGGTGGCCTACCTGGAACAGATAACTCAGACCAAGCAAGAGATTTTTCATTGGCATT 417 Query 418 GAAAGATAGATTTTACATACAACCATTGTCACCAACAGAAGCTGCAGCTAGAGCCAAAGA 477 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GAAAGACAGATTTTACATACAACCATTGTCACCAACAGAAGCTGCAGCTAGAGCCAAAGA 477 Query 478 TTCTGCTAAAGAGATCATCAACGTTAAGTCATTTATCGACAAAAAAGCTTGGCCCTATGT 537 ||||||||||||||||| |||||||||||| | |||||||||||||||||||| || || Sbjct 478 ATCTGCTAAAGAGATCATTAACGTTAAGTCACTGATCGACAAAAAAGCTTGGCCTTACGT 537 Query 538 TCAGAACGATCTCCGTTTAAGAGCATCGTACCTCCGTTACGATCTCAACACCGTTATCTC 597 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 538 TCAGAACGATCTCCGTTTAAGAGCATCGTACCTTCGTTACGATCTTAACACCGTTATCTC 597 Query 598 CGCTAAGCCTAAGGAAGAGAAGCA-AAGCCTTAAAGATCTCACCG-CAAAGCTTTTCCAA 655 |||||||||||| |||||||| | || ||||||||| || |||| ||| ||| ||| || Sbjct 598 CGCTAAGCCTAAAGAAGAGAAAAAGAA-CCTTAAAGAACTTACCGGCAA-GCTCTTCGAA 655 Query 656 ACCATTGACAACTTGGACTATGCGGCGAGATCAAAGAGTAGCCCAGATGCTGAGAAGTAT 715 ||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct 656 ACCATCGACAACTTGGACTATGCGGCGAGGTCTAAGAGCAGCCCAGATGCTGAGAAGTAT 715 Query 716 TACTCAGAAACTGTCTCGAGTTTGAACAATGTTCTTGCCAAGCTCGGTTAATGAAGAAAG 775 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 716 TACTCAGAAACTGTCTCGAGTTTGAACAATGTTCTTGCCAAGCTTGGTTAATGAAGAAAG 775 Query 776 ACTTGCGTTGTAATCTGTTGATGTCGATGTTATTATAATTACTGCTATCCAAGTACTTTG 835 | |||| ||||||| ||||||||||||||||||||| |||| | |||||||||||||||| Sbjct 776 ATTTGCTTTGTAATGTGTTGATGTCGATGTTATTATTATTATTACTATCCAAGTACTTTG 835 Query 836 TCTTTCTCCTTCTCTTCTTG-T---CTGATCAAATCGGTTATCTCTAATTTCAGTTTC 889 |||||||||| |||||||| | ||||||||||||||||| ||||||||||||||| Sbjct 836 TCTTTCTCCTCCTCTTCTTAATTATCTGATCAAATCGGTTATTTCTAATTTCAGTTTC 893 > Ahg492755 jgi|Araly1|492755|fgenesh2_kg.7__2188__AT4G21280.2 Length=890 Score = 442 bits (239), Expect = 2e-123 Identities = 550/695 (79%), Gaps = 42/695 (6%) Strand=Plus/Plus Query 90 CTTCGATGGCTGGCTTACGTGGAGCATCTCAGGCTGTCCTTGAAGGAAGTTTACAGATCA 149 ||||||||| ||| |||| || ||||||| ||| || ||||||||||| ||| |||||| Sbjct 42 CTTCGATGGGTGGATTACACGGTGCATCTCCGGCGGTTCTTGAAGGAAGCTTAAAGATCA 101 Query 150 ACGGCTCAAACCGTTTGAACAT--CT-CAAGAGTCTCGGTTGGGTCTCAGAGAACCGGAC 206 | ||||| | |||| |||| | || |||||| ||| | || |||| || | ||| Sbjct 102 ATGGCTCGAGCCGTCTGAATGTCCCTGGAAGAGTGGCGG-T-GG-CTCAAAGGTCTAGAC 158 Query 207 TTGTGATCAGGGCTCAGCAGAACGTGTCAGTACCAGAAAGTAGTCGCCGGTCAGTGATTG 266 ||||| |||| ||||||||| | || | | ||| | | ||| ||||| ||||||| Sbjct 159 TTGTGGTCAGAGCTCAGCAG---G-GT--G-A--AGAGACTTCTCGTCGGTCTGTGATTG 209 Query 267 GACTCGTGGCGGCTGGTTTAGCCGGTGGTTCATTCGTTAAAGCTGTTTTCGCCGAAGCTA 326 | |||||||| ||||| ||||||||||| || || ||| | ||||| ||||||| ||| Sbjct 210 GGCTCGTGGCTGCTGGATTAGCCGGTGGCTCGTTTGTTCAGGCTGTCCTCGCCGATGCTG 269 Query 327 TTCCGATCAAAGTTGGTGGTCCTCCACTTCCTTCCGGTGGCC-T--ACCTGGAACAGATA 383 ||||||||||||||||| |||||||| |||||||||||||| | | |||| ||||| | Sbjct 270 TTCCGATCAAAGTTGGTCCTCCTCCACCTCCTTCCGGTGGCCTTCCAGCTGGGACAGAGA 329 Query 384 ACTCAGACCAAGCAAGAGACTTTTCATTGGCATTGAAAGATAGATTTTACATACAACCAT 443 ||||||||||||||||||||||| ||||||||||||||| || |||||| |||| |||| Sbjct 330 ACTCAGACCAAGCAAGAGACTTTGAATTGGCATTGAAAGACAGGTTTTACTTACAGCCAT 389 Query 444 TGTCACCAACAGAAGCTGCAGCTAGAGCCAAAGATTCTGCTAAAG-AGATCATCAACGTT 502 || ||||||||||||||||||||||||||||||| ||||| |||| | ||||| || || Sbjct 390 TGCCACCAACAGAAGCTGCAGCTAGAGCCAAAGAATCTGC-AAAGGATATCATAAATGTG 448 Query 503 AAGTCATTTATCGACAAAAAAGCTTGGCCCTATGTTCAGAACGATCTCCGTTT-AAGAGC 561 ||| |||| ||||||| ||||||||||| |||||||| ||||||||||||| ||| || Sbjct 449 AAGCCATTGATCGACAGGAAAGCTTGGCCATATGTTCAAAACGATCTCCGTTCCAAG-GC 507 Query 562 ATCGTACCTCCGTTACGATCTCAACACCGTTATCTCCGCTAAGCCTAAGGAAGAGAAGCA 621 || || || ||||| || || ||||| | || ||| | || || ||||| |||||| | Sbjct 508 TTCTTATCTTCGTTATGACCTTAACACAATCATTTCCTCCAAACCCAAGGACGAGAAG-A 566 Query 622 AAG-CCTTAAAG-ATCTCACCGCAAAGCTTTTCCAAACCATTGACAA-CTTGGACTATGC 678 | | || ||||| | |||||| | ||||| ||| | ||||| ||||| || ||| ||||| Sbjct 567 A-GTCCCTAAAGGAGCTCACCACCAAGCTCTTCGATACCATCGACAATCT-GGATTATGC 624 Query 679 GGCGA-GATCAAAGAGTAGC--C-CAGATGCTGAGAAGTATTACT-CAGAAACTGTCTC- 732 ||||| || || |||| | | ||| ||||||||||| || | | || || ||||| Sbjct 625 GGCGAAGAAGAA-GAGTC-CTTCGCAG--GCTGAGAAGTACTA-TGCTGAGACAGTCTCT 679 Query 733 GAGTTTGAAC-AATGTTCTTGCCAAGCTCGGTTAA 766 | ||||||| || |||||||||||||| |||||| Sbjct 680 GC-TTTGAACGAA-GTTCTTGCCAAGCTTGGTTAA 712 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38580392004 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5