BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05380.1
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490182 jgi|Araly1|490182|fgenesh2_kg.6__3316__AT4G05380.1 1051 0.0
> Ahg490182 jgi|Araly1|490182|fgenesh2_kg.6__3316__AT4G05380.1
Length=745
Score = 1051 bits (569), Expect = 0.0
Identities = 689/747 (92%), Gaps = 7/747 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCCTGAGCTCAAGAACACATTGATCCGTGACCTAGACGCTTTCTCCAATGGAAAA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAACCTGAGCTCAAGAACACATTGATCCGTGACCTAGACGCTTTCTCCAATGGAAAA 60
Query 61 GACTTCTTCAAAACCGTGGGACGAGCTTGGAAACGCGGTTATCTTCTTTACGGTCCACCT 120
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||
Sbjct 61 GACTTCTTCAAAACCGTAGGAAGAGCTTGGAAACGCGGTTATCTTCTTTACGGTCCTCCT 120
Query 121 GGAACCGGAAAATCATCGCTTGTTGCTGCAATTGCTAATTTTATGAACTATAGTATCTAT 180
|||||||||||| |||||||||||||||| ||||||||| |||||| ||||||||||||
Sbjct 121 GGAACCGGAAAAACATCGCTTGTTGCTGCCATTGCTAATCATATGAAGTATAGTATCTAT 180
Query 181 GATCTTCAGATTCAGAGCGTTAAAGATGATGCAATGCTTAGACAGATTCTTACCTCAACC 240
||||||||||||||||| |||| |||||||||| || ||||||||||||| || | |||
Sbjct 181 GATCTTCAGATTCAGAGTGTTAGAGATGATGCATTGTTTAGACAGATTCTCACTTTGACC 240
Query 241 GAGAACCGCTCCATTCTTCTCATTGAAGATCTTGATTGCAGTGGAGCAGATACTACTTGT 300
||||||||||||||||||||||| ||||||||||||||||||||||| ||| || |||||
Sbjct 241 GAGAACCGCTCCATTCTTCTCATCGAAGATCTTGATTGCAGTGGAGCGGATGCTTCTTGT 300
Query 301 AGAAAGGAAAATAAAGATGAAACAGAGTATGGTGAGAATCAGAACAAGAAGAAGAAGAAG 360
||||| ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 301 AGAAACGAAAACAAAGATGAAACAGAATATGGCGAGAAACAGAACAAGAAGAAGAAGAAG 360
Query 361 ---GATCCTAAGGTAACTCTGTCTGGGCTACTAAACTTTGTAGACGGGTTATGGTCAAGC 417
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 AATGATCCTAAGGTAACTTTGTCTGGTCTACTAAACTTTGTAGACGGGTTATGGTCAAGC 420
Query 418 TGTGTAGAAGAGA-GGATCATCA-TATTCACAACGAACCATAAGGAGAAACTCGATCCGG 475
||||||||||| | ||||||| | ||||||| ||||||||||||||||||||||||||||
Sbjct 421 TGTGTAGAAGA-ACGGATCAT-AGTATTCACTACGAACCATAAGGAGAAACTCGATCCGG 478
Query 476 CATTGCTGAGACCAGGAAGGATGGATGTTCACATCCTCATGGATTATTGCACGCCTATTG 535
||||||||||||||||||| |||||||||||||| |||||||||||||| || |||| ||
Sbjct 479 CATTGCTGAGACCAGGAAGAATGGATGTTCACATACTCATGGATTATTGTACACCTACTG 538
Query 536 TTTTCAAGAAACTTGCTGCATTGTATCTTGAAATCGAAGAACACGAGTTGTTTGACCCTA 595
||||||||||||| ||||||||||| ||||||||||||||||| || ||||||| ||||
Sbjct 539 TTTTCAAGAAACTCGCTGCATTGTACCTTGAAATCGAAGAACATGACATGTTTGAGCCTA 598
Query 596 TTGAGAAGATGTTCCTTGAGGTGAAAGCAACTCCAGCTGAGATCACAGAGAAGCTTATGG 655
||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 599 TTGAGAAGATGTTACTTGAGGTGAAAACAACTCCAGCTGAGATCACAGAGCAGCTTATGG 658
Query 656 TAAGCAAGGATCCGGATGTTACGCTTAAGGGTCTTGTTGAGTTTCTTGAATCCAAGAAGA 715
|||||||| |||| |||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 659 TAAGCAAGAATCCAGATGTTACGCTTAAGGGTCTTGTTGAGTTTCTTGAAACTAAGAAGT 718
Query 716 TGACCAAGGAGAGTGTTGATTCTGAAA 742
|||| || |||||||||||| ||||||
Sbjct 719 TGACTAAAGAGAGTGTTGATACTGAAA 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27524746074
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5