BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G05590.2

Length=766
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490066 jgi|Araly1|490066|fgenesh2_kg.6__3200__AT4G05590.2         483    1e-135


> Ahg490066 jgi|Araly1|490066|fgenesh2_kg.6__3200__AT4G05590.2
Length=616

 Score =  483 bits (261),  Expect = 1e-135
 Identities = 363/410 (89%), Gaps = 16/410 (4%)
 Strand=Plus/Plus

Query  278  TCGATGTGTGAACTTTAATGTTTATATGATGCCTCGTATGGCTGTC-ATTGTATCAGTGA  336
            |||||||||||||||| ||||||||||||||||||||||   || | |||||||||||||
Sbjct  221  TCGATGTGTGAACTTTTATGTTTATATGATGCCTCGTATTTTTG-CTATTGTATCAGTGA  279

Query  337  TCACAGGTACTGGACTTGTTTGGTCACGTTACAGCACTGTAATTACTCCGAAAAACTGGA  396
            ||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct  280  TCACAGGCACTGGACTTGTTTGGTCGCGTTACAGTACTGTAATCACTCCGAAAAACTGGA  339

Query  397  ATCTCTTTAGCGTGAGTCTTGGTATGGCTGTGACAGGGATATACCAACTTACTCGTAAAA  456
            ||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct  340  ATCTCTTTAGCGTAAGTCTTGGAATGGCCGTGACAGGCATATACCAACTTACTCGTAAAA  399

Query  457  TAAAGCACGATTATGTATATGAAGCAAATTCTATTGTTGCAAAAGAATGATGAAGATGAA  516
            ||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct  400  TAAAGCACGATTATGCATCTGAAGCAAATCCTATTGTTGCAAAAGAATGATGAAGATGAA  459

Query  517  GATTTGCGGTTTTTATTAAAAACCCCATCTTTCTTGCAGATTCATTCAAAAATATTATCA  576
            |  ||| |||| |||||||||||   |||||||    |  |||   ||||| ||| ||||
Sbjct  460  GCCTTGTGGTTCTTATTAAAAACTA-ATCTTTC----A--TTC---CAAAA-TATCATCA  508

Query  577  TGTCAAGGCTTGGTTTTGTTTCCATACCCAAATCtttttttGGGTTGTTAATTGTTTATG  636
            |||||||||||| ||||||||  |||||||||| |||||| ||||| | ||||| |||||
Sbjct  509  TGTCAAGGCTTGATTTTGTTTGAATACCCAAATATTTTTT-GGGTTATAAATTGGTTATG  567

Query  637  TTATAGTTAGAAAGTGAAATACTGGTGTGAGTACTAT-AATTGTATAACT  685
            |||| |||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct  568  TTATCGTTAGAAAATGAAATACTGGTGTGAGTACTATGAAT-GTATAACT  616


 Score =  294 bits (159),  Expect = 5e-79
 Identities = 167/171 (98%), Gaps = 0/171 (0%)
 Strand=Plus/Plus

Query  54   AGAGAAAAATTGATGGCAACTTCGAAGCTTCAAGCTCTTTGGAATCATCCAGCTGGACCT  113
            ||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  33   AGAAAAAAATCGATGGCAACTTCGAAGCTTCAAGCTCTCTGGAATCATCCAGCTGGACCT  92

Query  114  AAGACAATTCATTTTTGGGCGCCGACGTTCAAGTGGGGTATAAGCATTGCCAATATTGCA  173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  93   AAGACAATTCATTTTTGGGCGCCGACGTTCAAGTGGGGTATAAGCATTGCCAACATTGCA  152

Query  174  GACTTTCAAAAACCTCCAGAGACACTTTCATACCCTCAACAAATTGGTATT  224
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  153  GACTTTCAAAAACCTCCAGAGACACTTTCATACCCTCAACAAATTGGTATT  203



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28249081497


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5