BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G05590.2 Length=766 Score E Sequences producing significant alignments: (Bits) Value Ahg490066 jgi|Araly1|490066|fgenesh2_kg.6__3200__AT4G05590.2 483 1e-135 > Ahg490066 jgi|Araly1|490066|fgenesh2_kg.6__3200__AT4G05590.2 Length=616 Score = 483 bits (261), Expect = 1e-135 Identities = 363/410 (89%), Gaps = 16/410 (4%) Strand=Plus/Plus Query 278 TCGATGTGTGAACTTTAATGTTTATATGATGCCTCGTATGGCTGTC-ATTGTATCAGTGA 336 |||||||||||||||| |||||||||||||||||||||| || | ||||||||||||| Sbjct 221 TCGATGTGTGAACTTTTATGTTTATATGATGCCTCGTATTTTTG-CTATTGTATCAGTGA 279 Query 337 TCACAGGTACTGGACTTGTTTGGTCACGTTACAGCACTGTAATTACTCCGAAAAACTGGA 396 ||||||| ||||||||||||||||| |||||||| |||||||| |||||||||||||||| Sbjct 280 TCACAGGCACTGGACTTGTTTGGTCGCGTTACAGTACTGTAATCACTCCGAAAAACTGGA 339 Query 397 ATCTCTTTAGCGTGAGTCTTGGTATGGCTGTGACAGGGATATACCAACTTACTCGTAAAA 456 ||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||| Sbjct 340 ATCTCTTTAGCGTAAGTCTTGGAATGGCCGTGACAGGCATATACCAACTTACTCGTAAAA 399 Query 457 TAAAGCACGATTATGTATATGAAGCAAATTCTATTGTTGCAAAAGAATGATGAAGATGAA 516 ||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||| Sbjct 400 TAAAGCACGATTATGCATCTGAAGCAAATCCTATTGTTGCAAAAGAATGATGAAGATGAA 459 Query 517 GATTTGCGGTTTTTATTAAAAACCCCATCTTTCTTGCAGATTCATTCAAAAATATTATCA 576 | ||| |||| ||||||||||| ||||||| | ||| ||||| ||| |||| Sbjct 460 GCCTTGTGGTTCTTATTAAAAACTA-ATCTTTC----A--TTC---CAAAA-TATCATCA 508 Query 577 TGTCAAGGCTTGGTTTTGTTTCCATACCCAAATCtttttttGGGTTGTTAATTGTTTATG 636 |||||||||||| |||||||| |||||||||| |||||| ||||| | ||||| ||||| Sbjct 509 TGTCAAGGCTTGATTTTGTTTGAATACCCAAATATTTTTT-GGGTTATAAATTGGTTATG 567 Query 637 TTATAGTTAGAAAGTGAAATACTGGTGTGAGTACTAT-AATTGTATAACT 685 |||| |||||||| ||||||||||||||||||||||| ||| |||||||| Sbjct 568 TTATCGTTAGAAAATGAAATACTGGTGTGAGTACTATGAAT-GTATAACT 616 Score = 294 bits (159), Expect = 5e-79 Identities = 167/171 (98%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 54 AGAGAAAAATTGATGGCAACTTCGAAGCTTCAAGCTCTTTGGAATCATCCAGCTGGACCT 113 ||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 33 AGAAAAAAATCGATGGCAACTTCGAAGCTTCAAGCTCTCTGGAATCATCCAGCTGGACCT 92 Query 114 AAGACAATTCATTTTTGGGCGCCGACGTTCAAGTGGGGTATAAGCATTGCCAATATTGCA 173 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 93 AAGACAATTCATTTTTGGGCGCCGACGTTCAAGTGGGGTATAAGCATTGCCAACATTGCA 152 Query 174 GACTTTCAAAAACCTCCAGAGACACTTTCATACCCTCAACAAATTGGTATT 224 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 153 GACTTTCAAAAACCTCCAGAGACACTTTCATACCCTCAACAAATTGGTATT 203 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28249081497 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5