BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G07410.1
Length=2752
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942536 jgi|Araly1|942536|scaffold_603080.1 3875 0.0
Ahg313471 jgi|Araly1|313471|fgenesh1_pm.C_scaffold_1002251 686 0.0
> Ahg942536 jgi|Araly1|942536|scaffold_603080.1
Length=2480
Score = 3875 bits (2098), Expect = 0.0
Identities = 2368/2497 (95%), Gaps = 24/2497 (1%)
Strand=Plus/Plus
Query 67 CACTTCTCCTTCTGCTTCCGTCATGCTCGAGTACCGTTGCAGCTCCGTTGACTGGAAACC 126
||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 CACTTCTCCTTCTTC-TCCGTCATGCTCGAATACCGTTGCAGCTCCGTTGACTGGAAACC 59
Query 127 ATCACCGGTGGTAGCCCTAGCTAACAGCTCCGACGACTCTCAAGTCGCCGCCGCTCGCGA 186
||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 60 ATCACCGGTGGTAGCCCTAGCTAACAGCTCCGACGACTCACAAGTCGCGGCGGCTCGCGA 119
Query 187 GGACGGTTCTCTTGAAATCTGGCTCGTCTCCCCCGGCGCCGTCGGATGGCACTGTCAACT 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGACGGTTCTCTTGAAATCTGGCTCGTCTCCCCCGGCGCCGTCGGATGGCACTGTCAACT 179
Query 247 CACTATCCATGGCGATCCAAATTCGAGAATCTCGTCTCTTGCGTGGTGCTGTTCTCCTTC 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 CACTATCCATGGCGATCCAAATTCGAGAATCTCGTCTCTTGCGTGGTGCTGTTCTGGTTC 239
Query 307 TATAGGGCTTCCTTCTGGTCGGTTATTCTCCTCTAGCATCGATGGCTCTATTTCTGAATG 366
|| |||||| ||||| |||||||| || || ||||||||||||||||| |||||||||||
Sbjct 240 TAAAGGGCTGCCTTCGGGTCGGTTGTTTTCTTCTAGCATCGATGGCTCCATTTCTGAATG 299
Query 367 GGATCTTTTCGATTTGAAGCAGAAGATTGTGCTTGAGTCTATTGGAATCTCGATATGGCA 426
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 300 GGATCTTTTCGATTTGAAGCAGAAGATTGTGCTTGAGTCTATTGGATTCTCGATATGGCA 359
Query 427 AATGGCATTGGCTCCGATTAGCGGATTCTCGAGTGATGTAGAAGGTATTAAGAATGGATA 486
||||||||||||||||||||| | | ||| | |||||||||||||||||||||||||||
Sbjct 360 AATGGCATTGGCTCCGATTAGTGTAGCCTCCATTGATGTAGAAGGTATTAAGAATGGATA 419
Query 487 CTTGAGTGAGAAATCGAATGATGAGGAAGAGATTGGGAGTGAAGAAGATGGTTCTGATTC 546
|| |||| | | | | |||||||||||| |||||||||||||||||||||||| ||
Sbjct 420 CTCGAGT--G--A--G-A--ATGAGGAAGAGAGTGGGAGTGAAGAAGATGGTTCTGACTC 470
Query 547 CGATGAGTTTCATGAG-AAGTCAGA-GG--AGGAGATAGATAGGATTCTTGCAGCTGCTT 602
||||||||||||||| || ||||| || || | ||||||| |||||||||||||||
Sbjct 471 GGATGAGTTTCATGAGCAA-TCAGATGGTTCTGATACAGATAGGCTTCTTGCAGCTGCTT 529
Query 603 GTGATGATGGTTGTGTGAGACTGTACCGTATCTCTAATTTAGAAAAGTTAACTTACTATA 662
||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct 530 GTGATGATGGTTGTGTGAGACTGTACCGTATCTCTGACTTAGACAAGTTAACTTACTATA 589
Query 663 GATCATTGCCTAGGGTCAGTGGACGTGCTTTAAGTGTAACATGGAGTCCAGATGCAAAAA 722
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 590 GATCATTGCCTAGGGTCAGTGGACGTGCTTTAAGTGTAACATGGAGTCCGGACGCAAAGA 649
Query 723 GGATCTTTTCGGGGAGCAGTGATGGGCTGATAAGATGCTGGGACGCTACCTCGTGTCATG 782
||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| |
Sbjct 650 GGATCTTTTCGGGTAGCAGTGATGGGCTGATAAGATGCTGGGACGCTAACTCATGTCAGG 709
Query 783 AGGTATACAGAATTACAGCTGGTCTTGGTGGACTAGGAAGTAGTTCTGAGATCTGTGTTT 842
|||||||| ||||||| | ||||||||||||||| || ||||||||||||||||||||||
Sbjct 710 AGGTATACCGAATTACCGTTGGTCTTGGTGGACTGGGGAGTAGTTCTGAGATCTGTGTTT 769
Query 843 GGTCACTTCTTTCGTTGAGGTGTTCAGTTCTTGTGAGTGGAGATAGTACAGGAACTGTCC 902
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 GGTCACTTCTATCGTTGAGGTGTTCAGTTCTTGTGAGTGGAGATAGTACAGGAACTGTCC 829
Query 903 AGTTTTGGGATAGTGAGCATGGAACCCTTTTGGAAGCACACTCTAATCACAAAGGTGATG 962
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 AATTTTGGGATAGTCAGCATGGAACCCTTTTGGAAGCACACTCTAATCACAAAGGTGATG 889
Query 963 TCAATACTCTTGCAGCAGCCCCCAGCCATAATCGAGTCTTTTCTGCTGGTGCGGATGGAC 1022
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 TCAATACTCTTGCAGCATCCCCCAGCCATAATCGAGTCTTTTCTGCTGGTGCGGATGGAC 949
Query 1023 AGGTTATCCTTTATAAGCTCTCTGGTAGTACTAACGGTTCTCAAGATTTGAAGCCTTCTT 1082
||||||| || ||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 950 AGGTTATTCTCTATAAGCTCTCCGGTAGGACTAATGGTTCTCAAGATTTGAAGCCTTCTT 1009
Query 1083 CCTCTCAGAAATGGGACTATATTGGTTATGTCAAGGCTCATACACATGACATCAGAGCTC 1142
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1010 CCTCTCAGAAATGGGACTATATTGGTTATGTAAAGGCTCATACACATGACATCAGAGCTC 1069
Query 1143 TTACAGTTGCTGTACCAATTAGTCGAGAAGATCCTTTTCCGGATGATATACTGCCAGATA 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 TTACAGTTGCTGTACCAATTAGTCGAGAAGATCCTTTTCCGGATGATATACTGCCAGATA 1129
Query 1203 AAGCGAGTCGTAAACATCGCAAAAAGGGGAAGCCGGTTGACTTCACTTATCATAAATGGG 1262
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1130 AAGCAAGTCGTAAACATCGCAAAAAGGGGAAGCCGGTTGACTTTACTTACCATAAATGGG 1189
Query 1263 CTCATTTGGGTGTTCCGATGCTTATTTCTGCTGGTGATGATGCAAAGCTTTTTGCATATT 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 CTCATTTGGGTGTTCCGATGCTTATTTCTGCTGGTGATGATGCAAAGCTTTTTGCATATT 1249
Query 1323 CAATTCAGGAATTTACTAAGTTCTCCCCACATGATATATGTCCTGCGCCTCAGAGAATAC 1382
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1250 CAATTCAGGAATTTACTAAGTTCTCCCCACATGATATATGTCCTGCACCTCAGAGAGTAC 1309
Query 1383 CCATGCAAATGGTACATAATTCGATGTTCAATAAGACTTCTCTTCTACTGGTTCAGGGTA 1442
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1310 CCATGCAAATGGTACATAATTCGATGTTCAATAAGACTTCTCTTCTCCTGGTTCAGGGTA 1369
Query 1443 TTAGTACTTTAGATATTCTTCGACTTAATATAAGCAGTGATTCTAGTGGTCGTGCCTCAA 1502
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1370 TTAGTACTTTAGATATTCTTCGACTTAATATAAGCAGTGATTCTAGTGGACGTGCCTCAA 1429
Query 1503 CAAAGTCATTGGTTCGTGTTAAAAGTAGAGATGCCCGAAAGATCATATGCAGTGCAATTT 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 CAAAGTCATTGGTTCGTGTTAAAAGTAGAGATGCCCGAAAGATCATATGCAGTGCAATTT 1489
Query 1563 CTAACACCGGATCACATTTTGCTTACTCTGACCAAATTGGCCCCAGTCTGTTCGAGTTGA 1622
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1490 CTAACACCGGATCACTTTTTGCTTACTCTGACCAAATTGGCCCCAGTCTGTTTGAGTTGA 1549
Query 1623 AGAAAAATGAATTTACAAAGTGTCCATGGAGTGTTAGTAGAAGGCGACTTCCTGAACTTC 1682
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 AGAAAAATGAGTTTACAAAGTGTCCATGGAGTGTTAGTAGAAGGCGACTTCCTGAACTTC 1609
Query 1683 CATTTGCACATTCCATGATTTTCAGTTCGGACTGCTCTCGTCTAATAATAGCAGGGCATG 1742
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1610 CATTTGCACATTCCATGATTTTCAGTTCGGACTGCTCTCGCCTAATAATAGCCGGGCATG 1669
Query 1743 ATAGAAGGATATATACTATTGACATAAGTAGTTTGGAACTAGTATATGCATTTACACCAT 1802
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 ACAGAAGGATATATACTATTGACATAAGTAGTTTGGAACTAGTATATGCATTTACACCAT 1729
Query 1803 CTAGGGAGGAGCATGAAGGTGAAGCTCCAACACCTAAGGAGCCTCCAATAACAAAATTGT 1862
|| |||||||||||||||||||||||||| | | |||||||||||| |||||||||||||
Sbjct 1730 CTCGGGAGGAGCATGAAGGTGAAGCTCCA-C-C-TAAGGAGCCTCCGATAACAAAATTGT 1786
Query 1863 TTACTAGCTCAGATGGTCAGTGGCTAGCTGCTATCAATTGCTTTGGGGACATCTATGTAT 1922
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1787 TTACTAGCTCAGATGGTCAGTGGCTAGCTGCTATCAATTGCTTTGGGGACGTCTATGTAT 1846
Query 1923 TCAACCTCGAAACACAAAGGCAGCACTGGTTCATTTCAAGACTCGATGGTGCATCTGTTA 1982
| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 1847 TTAACCTCGAAACACAAAGGCAGCATTGGTTCATATCAAGACTTGATGGTGCATCTGTTG 1906
Query 1983 CCGCTGCTGGATTTCATCCCTGGAATAACAATGCACTTGTGATCTCAACCTCCTCGAATC 2042
| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
Sbjct 1907 CGGCTGCTGGATTTCATCCCTGGAACAACAATGTGCTTGTGATCTCAACCTCCTCGAACC 1966
Query 2043 AGGTCTTTGCTTTTGATGTAGAAGCTAGACAGTTAGGCAAGTGGTCGTTGCTAAACACTT 2102
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1967 AGGTCTTTGCTTTTGATGTAGAAGCTAGACAGTTAGGCAAGTGGTCGTTGCTACACACAT 2026
Query 2103 ATGTTCTGCCAAAGAGGTATCAAGAGTTTCCTGGGGAGGTCCTTGGACTCTCATTCTCCC 2162
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2027 ATGTTCTGCCAAAGAGGTATCAAGAGTTTCCCGGGGAGGTCCTTGGACTCTCATTCTCCC 2086
Query 2163 CGTCACCAAATTCATCATCTGTGATAGTTTACAGTTCCAGAGCGAAATGTTTGATCGACT 2222
| |||||||||||||| |||||||| |||||||||||||| ||||| ||||| |||||||
Sbjct 2087 CATCACCAAATTCATCGTCTGTGATCGTTTACAGTTCCAGGGCGAAGTGTTTAATCGACT 2146
Query 2223 TCGGGAAGCCTGTGGAAGAAGATGAAGAGTATGATTTACCAAACGGCAAT-TTGTCTAAA 2281
| ||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 2147 TTGGGAAGCCTGTGGAAGAAGATGAAGAGAATGATTTACCAAACGGCAATCTT-TCTAAA 2205
Query 2282 ACGCTAGAAGGTAAACTTGTCAACTTGGGCTTGAAAAAGGGAAAGGGTACAAACCGAAAA 2341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2206 ACGCTAGAAGGTAAACTTGTCAACTTGGGCTTGAAAAAGGGAAAGGGTACAAACCGAAAA 2265
Query 2342 CGTCGGTTAGATGAGTATCAGTTAGAGGGTAAGAG-TAATGA-ACGAAAGAACTTCGAAA 2399
||||||||||||||||||||||||||||||||| | || || | |||||||||| ||||
Sbjct 2266 CGTCGGTTAGATGAGTATCAGTTAGAGGGTAAG-GCTACCGAGA-GAAAGAACTTTGAAA 2323
Query 2400 TCTTACCTTCAAACCACCCTGTTTTATTCGTGGGTCACCTTTCTAAAAACTCAATCCTGG 2459
||||||| ||||| || || |||||||||||||| |||||||||||||||||||||||||
Sbjct 2324 TCTTACCCTCAAAGCATCCAGTTTTATTCGTGGGACACCTTTCTAAAAACTCAATCCTGG 2383
Query 2460 TGATAGAGAAACCATGGATGGATGTTGTCAAGAGTTTGGATAATCAACCAGTAGACAGAC 2519
||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 2384 TGATAGAGAAACCGTGGATGGATGTTGTCAAGAGTTTGGATTCTCAACCAGTGGACAGAC 2443
Query 2520 ATATTTTTGGAACTTGAAGACAATGGAGTTGTTTGTC 2556
||||||||||||||||||| |||||||||||||||||
Sbjct 2444 ATATTTTTGGAACTTGAAGTCAATGGAGTTGTTTGTC 2480
> Ahg313471 jgi|Araly1|313471|fgenesh1_pm.C_scaffold_1002251
Length=3147
Score = 686 bits (371), Expect = 0.0
Identities = 708/869 (81%), Gaps = 30/869 (3%)
Strand=Plus/Plus
Query 1449 CTTTAGATATTCTTCG-ACTTAATATAAGCAGTGATTCTAGTGGTCGTGCCTCAACAAAG 1507
|||||||||||||||| | || | ||||||| |||||| ||||| || | ||| || |||
Sbjct 1235 CTTTAGATATTCTTCGTA-TTCACATAAGCAATGATTCCAGTGGGCGAGTCTCCACCAAG 1293
Query 1508 TCATTGGTTCGTGTTAAAAGTAGAGATGCCCGAAAGATCATATGCAGTGCAATTTCTAAC 1567
|||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1294 CCATTGGTTCGCGTTAAAAGTAAAGATGCCCGGAAGATCATATGCAGTGCAATTTCTAAC 1353
Query 1568 ACCGGATCACATTTTGCTTACTCTGACCAAATTGGCCCCAGTCTGTTCGAGTTGAAGAAA 1627
|| ||||||| ||||||||| ||||| ||| || |||| |||||||| ||||||||||||
Sbjct 1354 ACAGGATCACTTTTTGCTTATTCTGATCAAGTTCGCCCAAGTCTGTTTGAGTTGAAGAAA 1413
Query 1628 AATGAATTTACAAAGTGTCCATGGAGTGTTAGTAGAAGGCGACTTCCTGAA-CTTCCATT 1686
||| || || |||| ||||||||||| || ||||| ||||||||| || ||||| ||
Sbjct 1414 AATAAACTTGGAAAGAATCCATGGAGTGCTAATAGAAAGCGACTTCCC-AATCTTCCGTT 1472
Query 1687 TGCACATTCCATGATTTTCAGTTCG-GACTGCTCTCGTCTAATAATAGCAGGGCATGATA 1745
||| ||||||||| ||||||| | | |||||| ||| || ||||| || || |||||||
Sbjct 1473 TGCCCATTCCATGGTTTTCAGCT-GTGACTGCAGTCGGCTGATAATTGCTGGACATGATA 1531
Query 1746 GAAGGATATATACTATTGACATAAGTAGTTTGGAACTAGTATATGCATTTACACCAT-CT 1804
|||||||||||| | ||||| | |||| |||| ||| || || | ||||| ||| |
Sbjct 1532 GAAGGATATATATTGTTGACGTTGGTAGCATGGAGCTATTACATTCTTTTACTCCACGCC 1591
Query 1805 AGGGAGGAGCATGAAGGTGAAGCTCCAACACCTAAG-GAGCCTCCAATAACAAAATTGTT 1863
||| ||| ||| ||||| ||| |||| | | | | ||||||||||| |||||| |||
Sbjct 1592 AGG-AGGGGCAGGAAGGCGAATCTCCT-C-C-TC-GCGAGCCTCCAATTACAAAACTGTA 1646
Query 1864 TACTAGCTCAGATGGTCAGTGGCTAGCTGCTATCAATTGCTTTGGGGACATCTATGTATT 1923
|||||||||| ||| | | ||| |||||||||||||||||||||||||||| ||||| ||
Sbjct 1647 TACTAGCTCAAATGATGATTGGTTAGCTGCTATCAATTGCTTTGGGGACATATATGTGTT 1706
Query 1924 CAACCTCGAAACACAAAGGCAGCACTGGTTCATTTCAAGACTCGATGGTGCATCTGTTAC 1983
|||||| ||||| || |||||||| |||||||| ||||| || ||||||||||||||| |
Sbjct 1707 CAACCTAGAAACGCAGAGGCAGCATTGGTTCATATCAAGGCTTGATGGTGCATCTGTTGC 1766
Query 1984 CGCTGCTGGATTTCATCCCTGGAATAACAATGCACTTGTGATCTCAACCTCCTCGAATCA 2043
|| ||||| |||||||| || | ||||||| ||||||||||| ||||| || || ||
Sbjct 1767 AGCCGCTGGTTTTCATCCGAGGGACAACAATGTGCTTGTGATCTCGACCTCTTCAAACCA 1826
Query 2044 GGTCTTTGCTTTTGATGTAGAAGCTAGACAGTT-AGGCAAGTGGTCGTTGCTAAACACTT 2102
||||||||| || || || || |||||| |||| || ||||||||| |||| ||||||
Sbjct 1827 GGTCTTTGCATTGGACGTGGAGGCTAGAGAGTTGAG-CAAGTGGTCACTGCTGCACACTT 1885
Query 2103 AT-GTTCTGCCAAAGAGGTATCAAGAGTTTCCTGGGGAGGTCCTTGGACTCTCATTCTCC 2161
| ||| |||||||||| || ||| | |||||||| |||||| | ||||||||||||||
Sbjct 1886 TTTGTT-TGCCAAAGAGCTACCAAAATTTTCCTGGTGAGGTCGTAGGACTCTCATTCTCT 1944
Query 2162 CCGTCACCAAATTCATCATCTGTGAT-AGTTTACAGTTCCAG-AGCGA-AA-TGTTTGAT 2217
|||||||||| |||||||||||| || | ||||||| ||||| || | || ||||||||
Sbjct 1945 CCGTCACCAAGTTCATCATCTGTAATCA-TTTACAGCTCCAGCAGAGCTAAGTGTTTGAT 2003
Query 2218 CGACTTCGGGAAGCCTGTGGAAGAAGATGAAGA-GTATGATTTACCAAACGGCAATTTGT 2276
|| || |||||||| | |||| |||| || || | |||| ||| | ||||||||
Sbjct 2004 TGAATTTGGGAAGCCGGCGGAACAAGACGAGGAAGCG-GATTCGCCAT--G-CAATTTGT 2059
Query 2277 CT-AAAACGCTAGAAGGTAAACTTGTCAA 2304
|| |||| ||||||||||||||||| |||
Sbjct 2060 CTGAAAA-GCTAGAAGGTAAACTTG-CAA 2086
Score = 405 bits (219), Expect = 9e-112
Identities = 429/526 (82%), Gaps = 32/526 (6%)
Strand=Plus/Plus
Query 876 TGAGTGGAGATAGTACAGGAACTGTCCAGTTTTGGGATAGTGAGCATGGAACCCTTTTGG 935
||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||
Sbjct 725 TGAGTGGAGATAGTACAGGAAGTGTCCAGTTTTGGGATAGCCAGCATGGAACCCTATTGC 784
Query 936 AAGCACACTCTAATCACAAAGGTGATGTCAATACTCTTGCAGCAGCCCCCAGCCATAATC 995
| || || ||||||||||| |||||||||||| |||||||||||||||| || ||||| |
Sbjct 785 AGGCGCATTCTAATCACAAGGGTGATGTCAATGCTCTTGCAGCAGCCCCAAGTCATAACC 844
Query 996 GAGTCTTTTCTGCTGGTGCGGATGGACAGGTTATCCTTTATAAGCTCTCTGGTAGTACTA 1055
| || |||||||| | || | | || || | | ||||||||||| |||| |
Sbjct 845 GGGTGTTTTCTGC-AG-GC-GCT-GA-TGG--A--C------AGCTCTCTGGTGGTAC-A 888
Query 1056 -ACGGTTCTCAAGATTTGAAGCCTTCTTCCTCTCAGAAATGGGACTATATTGGTTATGTC 1114
|| |||||||| || ||||||||||||||||| ||||| ||||| |||| |||
Sbjct 889 TTTAAATCACAAGATTTTAAACCTTCTTCCTCTCAGAAGTGGGATTATATCGGTTGTGT- 947
Query 1115 AA-GGCTCATACACATGACATCAGAGCTCTTACAGTTGCTGTACCAATTAGTCGAGAA-G 1172
|| ||||||||||||||||||||| ||||| || ||||| || ||||| ||| | ||| |
Sbjct 948 AAGGGCTCATACACATGACATCAGGGCTCTAACTGTTGCAGTGCCAATAAGTTGGGAAGG 1007
Query 1173 ATCCTTTTCCGGATGATA-TACTGCCAGA-TAAAGCGAGTCGTAAACATCGCAAAAAGGG 1230
||| |||| | || | || ||| | | | || | |||| |||||| |||| ||||
Sbjct 1008 TTCC-CTTCC--A-GACAGTAATGCAAAAGT-AA-CAAGTCCTAAACAGCGCAGGAAGGA 1061
Query 1231 GAAGCCGGTTGACTTCACTTATCATAAATGGGCTCATTTGGGTGTTCCGATGCTTATTTC 1290
||||||||||| |||| ||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 1062 GAAGCCGGTTGGTTTCAGTTATCATAAATGGGCACATTTGGGGGTTCCGATGCTCATTTC 1121
Query 1291 TGCTGGTGATGATGCAAAGCTTTT-TGCATATTCAATTCAGGAATTTACTAAGTTCTCC- 1348
|||||||||||||||||| |||| |||||| ||| |||| || |||||||||||| ||
Sbjct 1122 AGCTGGTGATGATGCAAAG-TTTTATGCATACTCAGTTCAAGAGTTTACTAAGTTC-CCT 1179
Query 1349 CCACATGATATATGTCCTGCGCCTCAGAGAATACCCATGCAAATGG 1394
|||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 1180 CCACATGATATATGTCCTGCGCCTCAGAGAGTGCCCATGCAGATGG 1225
Score = 403 bits (218), Expect = 3e-111
Identities = 532/677 (79%), Gaps = 48/677 (7%)
Strand=Plus/Plus
Query 95 GAGTACCGTTGCAGCTCCGTTGACTGGAAACCATCACCGGTGGTAGCCCTAGCTAACAGC 154
|||||||| ||||||||| | || ||||| ||||| ||||||||||| || |||| ||||
Sbjct 7 GAGTACCGGTGCAGCTCCATCGATTGGAAGCCATCGCCGGTGGTAGCTCTTGCTACCAGC 66
Query 155 TCCGACGACTCTCAAGTCGCCGCCGCTCGCGAGGACGGTTCTCTTGAAATCTGGCTCGTC 214
||||||| |||||| || ||||| ||||| || || ||||||||||| |||||||||||
Sbjct 67 TCCGACGGCTCTCAGGTTGCCGCAGCTCGAGAAGATGGTTCTCTTGAGCTCTGGCTCGTC 126
Query 215 TCCCCCGGCGCCGT-CGGATGGCACTGTCAACTCACT-ATCCATGGCGATCCAAATTCGA 272
|| || || | | | | ||||||||||| |||| | |||||||| |||||||| ||||
Sbjct 127 TCTCCGGGTG-CTTCCTCTTGGCACTGTCAGCTCA-TCATCCATGGAGATCCAAAATCGA 184
Query 273 GAATCTCGTC-TCTTGCGTGGTGCT-GTTCTCCTTCTATAGGGCTTC--CTTCTGGTCGG 328
|||||||| | |||||||||| | || || ||||| | || ||| |||||| | |
Sbjct 185 GAATCTCG-CACCTTGCGTGGT-TTGGTGCTGGTTCTA-AAGG-TTCGTCTTCTGCTAGA 240
Query 329 TTATTCTCCTCTAGCATCGATGGCTCTATTTCTGAATGGGATCTTTTCGATTTGAAGCAG 388
|| || || |||||||| |||||| | ||||| || |||||||||||||| ||||||||
Sbjct 241 TTGTTTTCTTCTAGCATTGATGGCACAATTTCAGAGTGGGATCTTTTCGACTTGAAGCAA 300
Query 389 AAGATTGTGCTTGAGTCTA-TTGGAATCTCGATATGGCAAATGGCAT-T-G-G-CTC--- 440
||| | || || ||||| | ||||| | || || |||||||| || | | | | |||
Sbjct 301 AAGGTCGTTCTAGAGTC-ACTTGGAGTATCAATCTGGCAAATAGC-TCTGGCGCCTCTTT 358
Query 441 CGATT--AGCGGATTCTCGAGTGATG-TAGAAGGT-ATTAAGAATGGATACTTGAGTGAG 496
| ||| ||| || || | || | || || | ||| ||||||||||||||||||||
Sbjct 359 CCATTGAAGCAGAAGGTC-A-AGAAGCTA-AA-CTGATTCAGAATGGATACTTGAGTGAG 414
Query 497 AAATCGA-ATGATGAGGAAGAGATTGGGAGTGAAGAAGATGGTTCTGA-TTCCGATGAGT 554
||||| | |||| |||||||| | | ||||| ||||||| |||||| || || |||
Sbjct 415 AAATC-AGATGACGAGGAAGAAAGT-GGAGT--TGAAGATGATTCTGAGTT-GGACGAGC 469
Query 555 TTCATGAG-AAGTCAGAGGAGGAGATAGATAGG-ATTCTTGCAGCTGCTTGTGATGATGG 612
|| ||||| |||| | |||| | |||||| | ||||||||||||||||||||||||
Sbjct 470 TTGATGAGAAAGT---A-GAGGCCTTGGATAGGCA-TCTTGCAGCTGCTTGTGATGATGG 524
Query 613 TTGTGTGAG-ACTGTACCGTATCTCT-AATTTAGAAAAGTTAACTTACTATAGATCATTG 670
||||||||| | | || ||||||| ||| ||| |||||||||||||||||||| |||
Sbjct 525 TTGTGTGAGGA-TATATTATATCTCTGAATC-AGACAAGTTAACTTACTATAGATCGTTG 582
Query 671 CCTAGGGTCAGTGGACGTGCTTTAAGTGTAACATGGAGTCCAGATGCAAAAAGGATCTTT 730
|||||||||||||| |||||||||||||| || |||||| | || ||| | || ||||||
Sbjct 583 CCTAGGGTCAGTGGTCGTGCTTTAAGTGTGACGTGGAGTTCGGACGCACAGAGAATCTTT 642
Query 731 TCGGGGAGCAGTGATGG 747
||||| || || |||||
Sbjct 643 TCGGGCAGTAGCGATGG 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103834007870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5