BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G07960.1
Length=2622
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489694 jgi|Araly1|489694|fgenesh2_kg.6__2828__AT4G07960.1 3692 0.0
> Ahg489694 jgi|Araly1|489694|fgenesh2_kg.6__2828__AT4G07960.1
Length=2562
Score = 3692 bits (1999), Expect = 0.0
Identities = 2270/2400 (95%), Gaps = 22/2400 (1%)
Strand=Plus/Plus
Query 227 aaaaaaaaaaTGGCACCAAAGTTTGAATGGTGGGCTAAAGGAAACAACAACAAC-ACTCG 285
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 181 AAAACAAAAATGGCACCAAAGTTTGAATGGTGGGCTAAAGGAAACAACAACAACAAC-CG 239
Query 286 TAAAGGAACACCAGTCGTTGTCAAAATGGAAAACCCTAATAACTGGTCAATGGTGGAACT 345
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TAAAGGAACACCAGTCGTCGTCAAAATGGAAAACCCTAATAACTGGTCAATGGTGGAACT 299
Query 346 TGAATCACCTTCTCATGACGATTTCCTCGTAAGAACTCATGAGAAATCTCGTAACAAGAA 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGAATCACCTTCTCATGACGATTTCCTCGTAAGAACTCATGAGAAATCTCGTAACAAGAA 359
Query 406 CGCAAGACAGCTCACTTGGGTTCTACTTCTCAAAGCTCATCGTGCCGCAGGTTGTCTCAC 465
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 360 CGCAAGACAGCTCACTTGGGTTCTACTTCTTAAAGCTCACCGTGCCGCAGGTTGTCTCAC 419
Query 466 TTCTCTCGGTTCTGCATTATTCGCTCTCGGCACCGCCGTGCGCCGCCGTATCGCCGCCGG 525
||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||
Sbjct 420 TTCTCTCGGTTCTGCATTAATCGCTCTCGGCACTGCCGTACGCCGCCGTATCGCCGCCGG 479
Query 526 CCGTACAGACATTGAAATCTCCTCCTCGGGAGT-GGGTTCATTACAGAAGCAAAACCATA 584
||||||||||| ||||||||||||||| | || | ||||||||||||||| |
Sbjct 480 CCGTACAGACACTGAAATCTCCTCCTC----CTCCGG---AGTACAGAAGCAAAACCCTG 532
Query 585 CGAAGAAATCGAAACTTTTCTACTCTTGCTTAAAGGTGTTTCTATGGCTTTCTTTAATCC 644
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CGAAAAAATCGAAACTTTTTTACTCTTGCTTAAAGGTGTTTCTATGGCTTTCTTTAATCC 592
Query 645 TTTTGGGTTTTGAGATTGCTGCTTATTTCAAAGGTTGG-AGCTTTGGAACTTCTAAGCTT 703
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 593 TTTTGGGTTTTGAGATTGCTGCTTATTTCAAAGGTTGGCA-CTTTGGAACTTCTAAGCTT 651
Query 704 CAGCTTCAGTTTATCTTCAATAAAGGGTTCTTTGATTGGGTTTACACGAGATGGGTTTTG 763
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 652 CAGCTTCAGTTTATCTTCAATAAAGGATTCTTTGATTGGGTTTACACGAGATGGGTTTTG 711
Query 764 CTTCGTGTTGAGTATCTTGCTCCTCCTCTTCAGTTTCTTGCTAATGGCTGCATTGTTCTG 823
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 712 CTTCGTGTTGAGTATCTTGCTCCTCCGCTTCAGTTTCTTGCTAATGGCTGCATCGTTCTG 771
Query 824 TTTCTTGTTCAGAGTCTTGATAGACTCATTCTTTGTCTTGGTTGTTTTTGGATCCGGTTT 883
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 772 TTTCTTGTTCAGAGTCTTGATAGACTCATTCTTTGTCTTGGTTGTTTTTGGATCCG-TTT 830
Query 884 -AAGAAGATTAAACCGGTTCCTAAACCGGATTCTATCTCTGATCTTGAATCTGGTGATAA 942
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 831 CAAGAAGATTAAACCGGTTCCTAAACCAGATTCTATCTCTGATCTTGAATCTGGTGACAA 890
Query 943 TGGTGCTTTCCTCCCTATGGTTCTTGTTCAAATCCCTATGTGTAATGAGAAAGAGGTTTA 1002
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TGGTGCCTTCCTCCCTATGGTTCTTGTTCAAATCCCTATGTGTAATGAGAAAGAGGTTTA 950
Query 1003 TCAGCAATCTATTGCAGCTGTGTGTAACTTAGACTGGCCTAAAGGGAAGATTTTGATTCA 1062
||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 951 TCAGCAATCAATTGCTGCTGTTTGTAACTTAGACTGGCCAAAAGGGAAGATTTTGATTCA 1010
Query 1063 AATTCTCGATGATTCGGATGATCCGATAACGCAGAGTTTGATTAAAGAAGAGGTTCATAA 1122
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 AATTCTTGACGATTCGGATGATCCGATAACGCAGAGTTTGATTAAAGAAGAGGTTCATAA 1070
Query 1123 ATGGCAGAAGCTAGGTGCACGCATTGTGTATCGTCACCGTGTTAATAGAGAAGGTTACAA 1182
||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1071 ATGGCAGAATCAAGGTGCACGCATTGTGTATCGTCACCGTGTTAACAGAGAAGGTTACAA 1130
Query 1183 AGCTGGTAATCTTAAGTCTGCTATGAACTGTAGTTATGTTAAAGACTACGAATTCGTTGC 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1131 AGCTGGTAATCTTAAGTCTGCTATGAACTGTAGTTATGTTAAAGACTACGAATTCGTCGC 1190
Query 1243 GATTTTCGACGCAGATTTTCAACCTCTACCTGATTTCCTCAAGAAGACCATTCCTCATTT 1302
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1191 GATTTTCGACGCTGATTTTCAACCTCTACCTGATTTCCTCAAAAAGACAATTCCTCATTT 1250
Query 1303 TAAGGACAATGAGGAAATAGGATTGGTTCAAGCTAGGTGGTCTTTTGTGAATAAGGAAGA 1362
|||||| ||||||||| |||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1251 TAAGGATAATGAGGAACTAGGATTGGTTCAAGCGAGGTGGTCCTTTGTGAATAAGGAAGA 1310
Query 1363 GAACTTGTTGACAAGATTACAGAATATTAACTTGGCTTTTCACTTTGAGGTTGAGCAACA 1422
||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1311 GAATTTGTTGACACGATTACAGAACATTAACTTGGCTTTTCACTTTGAGGTTGAGCAGCA 1370
Query 1423 AGTGAATAGTGTCTTCTTGAATTTCTTCGGGTTTAACGGGACAGCCGGTGTGTGGAGGAT 1482
||||||||| ||||||||||||||||| || || || || ||||||||||| ||||||||
Sbjct 1371 AGTGAATAGCGTCTTCTTGAATTTCTTTGGATTCAATGGAACAGCCGGTGTCTGGAGGAT 1430
Query 1483 CAAAGCTTTGGAAGATTCCGGTGGTTGGCTCGAGAGAACTACCGTCGAGGATATGGACAT 1542
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 CAAAGCTTTGGAAGATTCTGGTGGTTGGCTCGAGAGAACTACCGTCGAGGATATGGACAT 1490
Query 1543 TGCGGTTCGTGCTCACCTTCACGGATGGAAATTCGTTTTCCTAAATGACGTTGAGTGCCA 1602
||| ||||||||||||||||| |||||||||||| |||||||||| |||||||||||||
Sbjct 1491 TGCTGTTCGTGCTCACCTTCATGGATGGAAATTCATTTTCCTAAACAACGTTGAGTGCCA 1550
Query 1603 ATGTGAATTACCGGAATCGTATGAAGCTTATAGAAAACAGCAACATAGATGGCATTCAGG 1662
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1551 ATGTGAATTACCGGAATCGTATGAAGCTTACAGAAAACAGCAACATAGATGGCATTCAGG 1610
Query 1663 TCCTATGCAACTATTTCGTCTTTGTTTGCCCGCGGTCATTAAATCAAAGATAAGCATAGG 1722
||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 1611 ACCTATGCAACTATTTCGCCTTTGTTTGCCGGCTGTCATTAAATCAAAGATAAGCATAGG 1670
Query 1723 AAAGAAATTCAATTTGATATTCCTCTTCTTTCTCCTGAGGAAGCTAATCTTGCCATTCTA 1782
||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1671 AAAGAAATTCAATCTGATATTCCTCTTCTTCCTCCTGAGGAAGCTTATCTTGCCATTCTA 1730
Query 1783 CTCATTCACTCTCTTTTGTATTATCCTGCCAATGACTATGTTTGTACCCGAAGCTGAGCT 1842
|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1731 CTCATTTACCCTCTTTTGTATTATCCTGCCAATGACTATGTTTGTACCCGAGGCTGAGCT 1790
Query 1843 TCCCGCTTGGGTTGTTTGCTACATACCTGCCACAATGTCTTTCCTCAACATCCTTCCCGC 1902
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1791 TCCCGCTTGGGTTGTTTGCTACATACCTGCCACAATGTCGTTCCTCAACATCCTTCCCGC 1850
Query 1903 CCCGAAGTCGTTTCCGTTTATCGTCCCGTACCTTCTCTTTGAGAACACAATGTCTGTGAC 1962
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1851 CCCGAAGTCATTTCCGTTTATAGTCCCGTACCTTCTCTTTGAGAACACAATGTCTGTGAC 1910
Query 1963 TAAGTTCAACGCAATGGTCTCGGGTTTGTTTCAGCTAGGAAGTGCTTATGAATGGGTTGT 2022
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1911 CAAGTTCAACGCAATGGTCTCGGGTCTATTTCAGCTAGGAAGTGCTTATGAATGGGTTGT 1970
Query 2023 TACaaaaaaaTCAGGACGGTCATCAGAAGGAGATCTTGCTGCGTTAGTCGAAAAAGACGA 2082
|||||||||||| ||||| ||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct 1971 TACAAAAAAATCTGGACGATCATCGGAAGGCGATCTTGCTGCTTTAGTTGAAAAAGACGA 2030
Query 2083 AAAGACAACTAAACATCAGAGAGGTGTGTCTGCACCCGAAACCGAAGCCGAGAAAAAGGC 2142
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 AAAGAAAACGAAACATCAGAGAGGTGTGTCTGCACCCGAAACCGAAGCCGAGAAAAAGGC 2090
Query 2143 GGAAAAGACTAAGAGGAAGAAGAAGAAGCACAATAGGATTTATATGAAGGAGCTATCTCT 2202
||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2091 GGAAAAGACAAAGAAAAAGAAGAAGAAGCACAATAGGATATATATGAAGGAGCTATCACT 2150
Query 2203 AGCGTTTCTGTTACTGACCGCGGCAACTCGAAGTCTTTTATCGGCGCAAGGAATCCATTT 2262
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 2151 AGCGTTTCTGTTACTGACTGCAGCAACTCGAAGTCTTTTATCGGCGCAAGGAATCCATTT 2210
Query 2263 CTACTTCCTTTTGTTTCAAGGAATATCTTTCTTACTTGTGGGTCTAGATCTTATTGGAGA 2322
|||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||||||
Sbjct 2211 TTACTTCCTCTTGTTTCAAGGAATCTCCTTCTTACTTGTTGGTCTAGATCTAATTGGAGA 2270
Query 2323 ACAAGTTGAATGACACTCAAAGAGATTGAAGTAGTGCTTGTAGAAGAGACGTTGTAGAAG 2382
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2271 GCAAGTTGAATGACACTCAAAGAGACTGAAGTAGTGCTTGTAGAAGAGACGTTGTAGAAG 2330
Query 2383 ACAGGAAACATGAAGAGAAAAAGGAAGAGGGTCTGGACCCaaaaaaaTACAATACAACAT 2442
||||||| ||||||||||| |||||| ||||||||||||||||| ||||||||||| |||
Sbjct 2331 ACAGGAA-CATGAAGAGAAGAAGGAA-AGGGTCTGGACCCAAAAGAATACAATACATCAT 2388
Query 2443 TGAACATAGATCGGTTTCATTGAGGAAGGACATGGATTAACTCTGTTGGTAGTGAATGTG 2502
||||||||||||||||||| | |||||||||||| ||||||||||| |||| | ||||
Sbjct 2389 TGAACATAGATCGGTTTCACTAAGGAAGGACATGAATTAACTCTGT-GGTA---A-TGTG 2443
Query 2503 TAAGGTTTTAACTTTTCTCTCTTTTGGGTTTGCCCACAGTTGTTTATTCTTTCGATTAAA 2562
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 2444 TAAGGTTTTAACTTTTCTTTCTTTTGGGTTTGGCCACAGTTGTTTATTCTTTCGTTTAA- 2502
Query 2563 TGGGGACAACTCTTTTGTAAGAAAGTTTTGTTCAATTATGAAAGCAAATTGTTTTAGCTC 2622
||||||||| |||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 2503 TGGGGACAATTCTTTTGTAAGAAAGTCTTGTTCAATTAAGAAAGCAAATTATTTTAGCTC 2562
Score = 189 bits (102), Expect = 9e-47
Identities = 161/188 (86%), Gaps = 9/188 (5%)
Strand=Plus/Plus
Query 1 CGCGTGTGATTATTAACTCGAGGTAATTTCTCTAATCCCAGTTAATATCACACGCGGAAT 60
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 CGCGTGTGATCATTAACTCGAGGTAAATTCTCTAATCCCAGTTAATATCACACGCGGAAT 60
Query 61 ATCAAAGATCTGATTTTTTGTAAACATTGTACCAAAATCATCAGAAGATTATAA-GTGGA 119
|||||||||| ||||| ||| ||||||||||| |||| || || || ||| |||||
Sbjct 61 ATCAAAGATCCGATTT---GTA--CATTGTACCAACATCAG-AGGAGGTT-TAAAGTGGA 113
Query 120 GTCTTTCGAAGAAGAACAAATTTG-TAACACGCGTCTCCATCAATCTTCTAGCTGGCAAT 178
|| ||| |||||| |||||| |||||||||||||| |||||| ||| |||| ||||
Sbjct 114 GTATTTGGAAGAACAACAAAGCCAATAACACGCGTCTCCTTCAATCCTCTCGCTGTCAAT 173
Query 179 GAGATCCA 186
||||||||
Sbjct 174 GAGATCCA 181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98882276020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5