BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G08310.1 Length=1709 Score E Sequences producing significant alignments: (Bits) Value Ahg489743 jgi|Araly1|489743|fgenesh2_kg.6__2877__AT4G08310.1 2296 0.0 > Ahg489743 jgi|Araly1|489743|fgenesh2_kg.6__2877__AT4G08310.1 Length=1665 Score = 2296 bits (1243), Expect = 0.0 Identities = 1552/1692 (92%), Gaps = 58/1692 (3%) Strand=Plus/Plus Query 1 TTCTGAGAGAAATGTCTGACGGCGACTCGACGACGACTTCGGCTATGGAGATCTCCGGCG 60 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTCTGAGAGAAATGTCT---GGCGACTCGACGACGACTTCGGCTATGGAGATCTCCGGCG 57 Query 61 ACAAGATTGATTTGAAGGACGGTGAAGCAACAACACCACCAAAAACAGATATCGAGTCAC 120 |||||||||||| |||||||||| || ||||| | | ||||| ||||||||| | Sbjct 58 ACAAGATTGATTCCAAGGACGGTG-AG--GCAACA--A-C---AACAGCTATCGAGTCTC 108 Query 121 AGATTCTCGCGGCTATGCAGTCCCGAGTAACCTACCTCAGAGATAAAGCAGACAACTTCA 180 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 109 AGATTCTCGCGGCTATGCAGTCTCGAGTAACCTACCTCAGAGATAAAGCAGACAACTTCA 168 Query 181 CCTTTGAAGGTGTGCGGAGGTTGCTGGAGGAGGATCTGAAATTGGAGAAACATGCTTTGG 240 ||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 169 CCTTTGAGGGTGTTCGGAGGTTGCTAGAGGAGGATCTGAAATTGGAGAAACATGCTTTGG 228 Query 241 ATGTGCATAAGAGCTTTGTTAAGCAACATTTGGTTCAGTGCTTAGCAGGTGCTGAGAATG 300 ||| ||| |||||||||||||| ||||||||| | ||||||||| |||||||||||||| Sbjct 229 ATGCGCACAAGAGCTTTGTTAAACAACATTTGCATAAGTGCTTAGAAGGTGCTGAGAATG 288 Query 301 ATGAAACTTCAGAAAATTCTCTAGAAACTGAGAAGAAAGATGATGTAACTCCAGTGAAAG 360 |||||||||| |||||||||| |||||||||||||||||||| ||| ||||| ||||||| Sbjct 289 ATGAAACTTCGGAAAATTCTCAAGAAACTGAGAAGAAAGATGCTGTTACTCCTGTGAAAG 348 Query 361 AAGCAGCAGAGTTATCTAAAGAGCAC-ACGACGAAAAAAGATGGTAAGGAAGATATGACT 419 ||| |||| ||||||||||||||||| | || ||||||||||| ||||||||||| |||| Sbjct 349 AAGTAGCAAAGTTATCTAAAGAGCACAAGGA-GAAAAAAGATGTTAAGGAAGATACGACT 407 Query 420 GGTGATGATGAGAAAACAAAAGATTCTCCTGTGATGGGACTTCTGACAGAAGAAAACACG 479 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 408 GGTGATGATGAGAAAACGGAGGATTCTCCTGTGATGGGACTTCTGACAGAAGAAAACACA 467 Query 480 TCCAAATCTGTTGCTGAGCAAACAAAGGATGAGG--A-CAAAGAGGTCCTGCAGAGTGAT 536 ||| ||||||| |||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 468 TCCCAATCTGTAGCTGAGCAAACAAAGGATGAGGACAGCAAAGAGGTCCTGCAGAGTGAT 527 Query 537 ATAAAGAAAGCCCTTCGTAAAAGGTCTTCTTATATTAAGGCTAATTCAGAGAAAATTACA 596 ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 528 ATAAAAAAAGCCCTTCGTAAAAGGGCTTCTTATATTAAGGCTAATTCAGAGAAAATTACA 587 Query 597 ATGGGTTTACTTCGTCGACTTTTGGAGCAAGATCTTAAATTAGAGAAGTATTCTCTTGAC 656 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 588 ATGGGCTTACTTCGTCGACTTTTGGAGCAAGATCTTAAATTAGAGAAGTACTCTCTTGAC 647 Query 657 CCCTACAAGAAATTCATTAATGGAGAACTAGATGAAATACTACAAGCTCATGAAGCTACA 716 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 648 CCCTACAAGAAATTCATTAATGGAGAACTAGATGAAATACTACAAGCTCCTGAAGCTACA 707 Query 717 CAATCTTCAACTAAGGCTCAGAGGAAACCAGTATCTAAGAAGGTCAAGAGCACACCAGCT 776 |||| ||||||||||||||||||||| | ||| | |||||||||||||||||||||||| Sbjct 708 AAATCGTCAACTAAGGCTCAGAGGAAAACTGTAACCAAGAAGGTCAAGAGCACACCAGCT 767 Query 777 AAAAACTCAGACAGTGAAGAAATGTTTGATTCAGATGGTGAAGACGAGGAGGAGGACAAG 836 ||||| ||||||||||||||||||| ||||||||||||| ||||| |||||| Sbjct 768 AAAAATTCAGACAGTGAAGAAATGTCTGATTCAGATGGT---------GAGGACGACAAG 818 Query 837 GAAGT-AGCTGT--AAAA-AAGAAGATGGCGGAGAAAAGAAAATTATCAAAGTCAGAGGG 892 ||||| | |||| |||| ||||||| ||| ||||||||||||| |||||||||||||| Sbjct 819 GAAGTCA-CTGTAAAAAAGAAGAAGACGGCTGAGAAAAGAAAATCGTCAAAGTCAGAGGG 877 Query 893 AACCGGAAAGCGGAAACGTGAAAAGGAGAAACCTGCCTCTGCAAAGAAGACAAAACAAAC 952 |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| Sbjct 878 AACCGGAAAGCGGAAACGTGAAAAGGAGAAACTTGCATTTGCAAAGAAGACAAAACAAAC 937 Query 953 AGATTCACAGAGCGACAGTGACGCAGGAGAAAAGGCACCATCTTCAGAAAAATCTGTAAA 1012 ||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| || Sbjct 938 AGATTCACAGAGCGACAGTGATGCAGGAGAAAAGGCATCATCTTCCGAAAAATCTGTGAA 997 Query 1013 GAAACCGGAAACTCCAACGACTGGCTATGGGAAGCGTGTTGAGCACCTTAAATCGATCAT 1072 ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 998 GAAACAGGAAACTCCAACGACTGGCTACGGGAAGCGTGTTGAGCATCTTAAATCGATCAT 1057 Query 1073 CAAATCTTGTGGAATGAGTATTTCTCCATCGGTTTACAGGAAAGCCAAGCAGGCTCCTGA 1132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1058 CAAATCTTGTGGAATGAGTATTTCTCCATCGGTTTACAGGAAAGCCAAGCAGGCTCCTGA 1117 Query 1133 GGAGAAACGCGAGGAAATTCTGATTAAAGAACTTAAGGAGTTACTCGCCAAAGAAGGGTT 1192 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 1118 GGAGAAACGCGAGGAAACTCTGATAAAAGAACTTAAGGAGTTACTCGCCAAAGAAGGGTT 1177 Query 1193 GTCTGCAAATCCTTCagagaaagagatcaaggaagtcaagaaaagaaaagaaagaacaaa 1252 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1178 GTCTGCAAATCCTTCAGAGAAAGAGATCAAGGAAGTCAAAAAAAGAAAAGAAAGAACAAA 1237 Query 1253 gGAGCTTGAGGGTATTGATACAAGCAACATTGTGTCGAGTTCAAGGAGAAGATCCAGC-G 1311 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| | | Sbjct 1238 GGAGCTCGAGGGTATTGATACAAGCAACATTGTGTCGAGTTCGAGGAGAAGATCCA-CTG 1296 Query 1312 CAAGTTTTGTACCTCCTCCAAAGCCGATAAAAGCAGAAGAAAGCGAGAGCGATGATTCag 1371 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1297 CAAGTTTTGTACCTCCTCCAAAGCCGATAAAAGCAGAAGAAAGCGAGAGCGATGAATCAG 1356 Query 1372 aagattctgagaatgaagaggatgaggatgaagaagtagtagtagaagaagaagagga-g 1430 |||||||||||||||| || |||||||||||||||||||||||||||||||| || || | Sbjct 1357 AAGATTCTGAGAATGAGGAAGATGAGGATGAAGAAGTAGTAGTAGAAGAAGATGAAGACG 1416 Query 1431 --gaagaagacgagggaggt-agtgaagaTGGCGGAGAGGGAAGTCAAAACGAAGGAGAA 1487 ||||||||||||| |||| | ||||||||||||||| ||||||||||||||||||||| Sbjct 1417 AAGAAGAAGACGAGGTAGGTGA-TGAAGATGGCGGAGATGGAAGTCAAAACGAAGGAGAA 1475 Query 1488 CTAAAAACTGAGGATGGTGGTGAAGAAGAAA-GCGAATAATTGTAAGATCGTTGGTTGT- 1545 | ||| |||||||||||||||||||| |||| |||| |||||||||||||||||||||| Sbjct 1476 CCAAACACTGAGGATGGTGGTGAAGA-GAAAAGCGAGTAATTGTAAGATCGTTGGTTGTG 1534 Query 1546 -TT-G-T-------A--A----TGTAGCCTAGTTTCACTATGTACTGTTGTAGAGTGGTG 1589 || | | | | |||||| ||| ||| ||||||||||||||||||||||| Sbjct 1535 CTTAGCTTTGTCGCAGGAACAATGTAGCTTAGCTTCTCTATGTACTGTTGTAGAGTGGTG 1594 Query 1590 ATATTTTGTACCTTTTTAATGTGCTAATCATATTTATGACATTAGGATATGAATTTTAAG 1649 ||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||| Sbjct 1595 ATATTTTGTAC-TTTTTAAGGTGTTAATCATAATTATGACATTAGGATATGAATTTTAAG 1653 Query 1650 GCTTGCATTATA 1661 ||||||||||| Sbjct 1654 ACTTGCATTATA 1665 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64105882335 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5