BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G08350.1 Length=3410 Score E Sequences producing significant alignments: (Bits) Value Ahg327088 jgi|Araly1|327088|fgenesh1_pm.C_scaffold_6002308 2427 0.0 Ahg482364 jgi|Araly1|482364|fgenesh2_kg.4__1424__AT2G34210.1 1520 0.0 > Ahg327088 jgi|Araly1|327088|fgenesh1_pm.C_scaffold_6002308 Length=3156 Score = 2427 bits (1314), Expect = 0.0 Identities = 1451/1516 (96%), Gaps = 13/1516 (1%) Strand=Plus/Plus Query 118 ATGCCGCGAAGCAGAGACGAAGACGATGAATTAGACGGTGACTACGAAGCATTAGATTTa 177 |||||||||||||||||||||||||||||| ||||||| |||||||||| ||| || ||| Sbjct 1 ATGCCGCGAAGCAGAGACGAAGACGATGAAATAGACGGAGACTACGAAGGATTGGAATTA 60 Query 178 gaggaagaagaggaagaagacgaagaagaagaagaagagagaggaagaggtggcggcggt 237 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 61 GAGGAAGAAGAGGAAGAAGAC---GAAGAAGAAGAAGAGAGAGGAAGAGGCGGCGGCGGT 117 Query 238 tctagacggaagagaggaagaTCGAATTTTATCGATGATTATGCTGAGGAAGATTCTCAG 297 ||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||| Sbjct 118 TCTAGGCGGAAGAGAGGAAGATCGAATTTTATTGATGATTATGCGGATGAAGATTCTCAG 177 Query 298 GAAGAAGATGATGACGATGAAGATTATGGTAGTAGCCGTGGAGGTAAAGGAGCTGCTAGT 357 |||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||| Sbjct 178 GAAGAAGACGATGATGATGAAGATTAT-G--GTAGCCGTGGAGGTAAAGGAGCTGCTAGT 234 Query 358 AAGAGAAAGAAGCCATCTGCTTCTATTTTCTTAGACCGAGAAGCTCATCAAGTTGATGAT 417 |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 235 AAGAGAAAGAAGCCTTCTGCTTCCATTTTCTTAGACCGAGAAGCTCATCAGGTTGATGAT 294 Query 418 GAAGACGAAGAGGAAGAAGATGAAGCAGAAGATGATTTTATTGTGGATAATGGAACGGAC 477 || || |||||||| ||||| |||| ||||||||| |||||||||||| |||||||||| Sbjct 295 GAGGAGGAAGAGGACGAAGAAGAAGGAGAAGATGACTTTATTGTGGATGCTGGAACGGAC 354 Query 478 CTTCCGGATGAGCGTGGTGATAGACGGTACGAACGGAGGTTTCTTCCTCGAGACGAAAAT 537 ||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 355 CTTCCTGATGAGCGTGGTGATAGACGGTACGAACGGAGGTTTCTTTCTCGTGACGAAAAT 414 Query 538 GATGAGGATGTGGAAGATCTCGAGAGAAGAATTCAAGAGCGGTTCTCCTCTAGGCATCAT 597 |||||||||||||||||||| ||||||||||||||||||||| | | ||||||||||||| Sbjct 415 GATGAGGATGTGGAAGATCTTGAGAGAAGAATTCAAGAGCGG-T-T-CTCTAGGCATCAT 471 Query 598 GAAGAATATGATGAAGAAGCTACAGAAGTTGAGCAACAAGCGCTTTTGCCATCAGTCCGT 657 |||||||||||||||||||| || || ||||||||||||||||||||||||||||| || Sbjct 472 GAAGAATATGATGAAGAAGCCACTGATGTTGAGCAACAAGCGCTTTTGCCATCAGTTCGC 531 Query 658 GATCCGAAATTGTGGATGGTGAAATGTGCGATTGGCCGTGAAAGGGAGGTTGCTGTTTGT 717 || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 532 GACCCGAAATTGTGGATGGTGAAATGTGCGATTGGTCGCGAAAGGGAGGTTGCTGTTTGT 591 Query 718 CTTATGCAAAAATTTATAGATCGAGGAGCTGATTTGCAGATTAGATCTGTTGTTGCCCTT 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 CTTATGCAAAAATTTATAGATCGAGGAGCTGATTTGCAGATTAGATCTGTTGTTGCCCTT 651 Query 778 GACCATCTTAAGAATTTTATATATGTTGAAGCAGACAAGGAAGCTCATGTGAAAGAGGCA 837 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 652 GACCATCTTAAGAATTATATATATGTTGAAGCAGACAAGGAAGCTCATGTGAAAGAGGCA 711 Query 838 ATCAAGGGCATGAGGAATATATATGCTAATCAGAAGATCTTACTTGTCCCGATAAGAGAA 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 712 ATCAAGGGCATGAGGAATATATATGCTAATCAGAAGATCTTACTTGTCCCGATAAGAGAA 771 Query 898 ATGACAGATGTTCTTTCTGTTGAGAGCAAAGCCATTGATCTATCACGGGATACCTGGGTT 957 ||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||| Sbjct 772 ATGACAGATGTGCTTTCTGTTGAAAGCAAAGCAATTGATCTATCTCGGGATACCTGGGTT 831 Query 958 AGAATGAAAATCGGGACGTATAAAGGTGATCTTGCAAAGGTAGTTGATGTTGATAATGTG 1017 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 832 AGAATGAAAATCGGGACGTATAAAGGTGATCTTGCAAAGGTAGTTGACGTTGATAATGTG 891 Query 1018 CGTCAGAGGGTCACAGTCAAGTTAATCCCAAGAATTGATCTGCAGGCACTAGCCAGTAAG 1077 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 892 CGTCAGAGGGTCACAGTCAAGTTAATCCCAAGAATTGATCTGCAGGCACTAGCCAGTAAG 951 Query 1078 CTGGACGGAAGAGAAGTTTCAAAGAAAAAAGCCTTTGTTCCACCTCCACGTTTCATGAAC 1137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 952 CTGGACGGAAGAGAAGTTTCAAAGAAAAAAGCCTTTGTTCCACCTCCACGTTTCATGAAC 1011 Query 1138 ATTGATGAAGCGAGGGAACTGCACATACGTGTTGAGCGTCGGCGTGATCACATGACTGGT 1197 ||||||||||| |||||| |||||||||||||||||||||||||||||| |||||| ||| Sbjct 1012 ATTGATGAAGCAAGGGAATTGCACATACGTGTTGAGCGTCGGCGTGATCCCATGACGGGT 1071 Query 1198 GATTACTTTGAAAATATTGGTGGCATGCTTTTCAAAGATGGGTTTCAT-TACAAA-CAAG 1255 ||||||||||||||||||||||||||||||||||||||||| ||| || |||||| || | Sbjct 1072 GATTACTTTGAAAATATTGGTGGCATGCTTTTCAAAGATGGTTTT-ATGTACAAAACA-G 1129 Query 1256 TATCATTGAAGTCCATCACTGTTCAGAATGTTACACCAACTTTTGACGAACTTGAAAAAT 1315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1130 TATCATTGAAGTCCATCACTGTTCAGAATGTTACACCAACTTTTGACGAACTTGAAAAAT 1189 Query 1316 TCAATAAACCAAGTGAAAATGGAGAGGGCGACTTTGGTGGTCTGTCAACATTATTTGCAA 1375 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 1190 TCAATAAACCAAGTGAAAATGGAGAGGGCGATTTTGGTGGTCTGTCAACTTTATTTGCAA 1249 Query 1376 ACAGAAAGAAAGGTCATTTCATGAAGGGTGATGCAGTTATTGTTATCAAGGGGGATCTGA 1435 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1250 ACAGAAAGAAAGGGCATTTCATGAAGGGTGATGCAGTTATTGTTATAAAGGGGGATCTGA 1309 Query 1436 AAAACTTGAAGGGTTGGGTTGAGAAAGTAGATGAAGAAAATGTCCTTATCAGATCAGAAG 1495 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1310 AAAACTTGAAGGGTTGGGTTGAGAAAGTAGATGAAGAAAATGTCCTTATCAGATCAGAAA 1369 Query 1496 TGAAAGGTCTCCCTGATCCTCTTGCTGTAAATGAGAGAGAGCTTTGCAAGTACTTTGAAC 1555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1370 TGAAAGGTCTCCCTGATCCTCTTGCTGTAAATGAGAGAGAGCTTTGCAAGTACTTTGAAC 1429 Query 1556 CTGGAAATCATGTGAAGGTTGTCTCTGGGACCCATGAAGGAGCAACAGGCATGGTTGTCA 1615 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1430 CTGGAAATCATGTGAAGGTTGTTTCTGGGACCCATGAAGGAGCAACAGGCATGGTTGTCA 1489 Query 1616 AAGTTGATCAACACGT 1631 |||||||||||||||| Sbjct 1490 AAGTTGATCAACACGT 1505 Score = 1493 bits (808), Expect = 0.0 Identities = 853/875 (97%), Gaps = 2/875 (0%) Strand=Plus/Plus Query 2369 CAGTTGATCGGGGTGCAATATCAGATAATGTTGCGACAACACCGTTTAGAGATACATCTC 2428 |||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 2284 CAGTTGATCGGGATGCAATATCAGATAATGTTGCGACAACACCCTTT--AGATACATCTC 2341 Query 2429 GGTATAGTATGGGAAGCGAAACACCTATGCATCCTTCACGGACTCCACTTCATCCTTATA 2488 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 2342 GGTATAGTATGGGAAGCGAAACACCTATGCATCCTTCTCGGACTCCACTTCATCCTTATA 2401 Query 2489 TGACTCCAATGCGGGACTCTGGAGCTACACCAATCCATGATGGAATGAGGACACCCATGC 2548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2402 TGACTCCAATGCGGGACTCTGGAGCTACACCAATCCATGATGGAATGAGGACACCCATGC 2461 Query 2549 GTGATAGAGCTTGGAATCCTTACACGCCTATGAGTCCACCTAGGGATAACTGGGAAGATG 2608 | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2462 GAGATAGAGCGTGGAATCCTTACACGCCTATGAGTCCACCAAGGGATAACTGGGAAGATG 2521 Query 2609 GAAATCCGGGATCTTGGGGAACGAGTCCTCAATATCAGCCGGGAAGTCCTCCTTCACGGG 2668 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2522 GAAATCCGGGATCTTGGGGAACGAGTCCTCAATATCAGCCGGGAAGTCCTCCTTCACGGG 2581 Query 2669 CATATGAAGCACCAACGCCTGGCTCAGGATGGGCTAGTACTCCTGGTGGTAGTTACTCGG 2728 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2582 CATATGAAGCACCAACTCCTGGCTCAGGATGGGCTAGTACTCCTGGTGGTAGTTACTCGG 2641 Query 2729 ATGCGGGGACACCTAGAGACCATGGTTCAGCTTATGCTAATGCCCCAAGTCCTTACCTGC 2788 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2642 ATGCGGGGACGCCTAGAGACCATGGTTCAGCTTATGCTAATGCCCCAAGTCCTTACCTGC 2701 Query 2789 CATCAACACCTGGGCAACCCATGACACCAAGCTCGGCTTCATACTTACCTGGTACTCCCG 2848 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 2702 CATCGACACCTGGGCAACCCATGACACCAAGCTCGGCTTCATACTTACCTGGAACTCCTG 2761 Query 2849 GAGGACAACCAATGACTCCTGGAACTGGCCTCGATGTCATGTCTCCTGTTATAGGTGGGG 2908 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2762 GAGGACAACCAATGACTCCTGGAACTGGCCTCGATGTCATGTCTCCTGTTATAGGTGGGG 2821 Query 2909 ATGCTGAAGCATGGTTCATGCCCGATATTTTGGTTGACATACACAAGGCTGGAGAGGACA 2968 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 2822 ATGCTGAAGCATGGTTCATGCCCGATATTTTGGTTGACGTACACAAGGCTGGAGAAGACA 2881 Query 2969 CCGATGTGGGCGTCATCCGAGATGTTTCGGATGGAACGTGTAAAGTGTCTCTCGGGTCCA 3028 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2882 GCGATGTGGGCGTCATCCGAGATGTTTCGGATGGAACGTGTAAAGTGTCTCTCGGGTCCA 2941 Query 3029 GCGGTGAAGGTGACACTATAATGGCCCTCCCAAGCGAACTGGAGATAATTCCTCCGAGGA 3088 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2942 GCGGTGAAGGTGACACTATAATGGCCCTCCCAAGCGAACTGGAGATAATTCCTCCGAGGA 3001 Query 3089 AATCCGATCGTGTCAAAATAGTTGGCGGTCAGTATCGTGGGTCTACAGGTAAGCTGATCG 3148 |||| |||||||||||||||||||| || || |||||||||||||||||||||||||||| Sbjct 3002 AATCTGATCGTGTCAAAATAGTTGGTGGCCAATATCGTGGGTCTACAGGTAAGCTGATCG 3061 Query 3149 GAATCGACGGGTCTGACGGTATCGTTAAGATAGATGATAATCTTGACGTCAAGATTCTGG 3208 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 3062 GAATCGACGGGTCTGACGGAATCGTTAAGATAGATGATAATCTTGACGTCAAGATTCTGG 3121 Query 3209 ACCTGGCCTTATTAGCCAAGTTTGTGCAACCGTGA 3243 ||||||||||||||||||||||||||||||| ||| Sbjct 3122 ACCTGGCCTTATTAGCCAAGTTTGTGCAACCTTGA 3156 Score = 1230 bits (666), Expect = 0.0 Identities = 696/711 (98%), Gaps = 0/711 (0%) Strand=Plus/Plus Query 1661 AACATGTCCGAGTGTTTGCTGATCATGTTGTTGAGAGTTCAGAAGTGACAACTGGTGTTA 1720 |||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1499 AACACGTTCGAGTGTTTGCTGATCATGTTGTTGAGAGCTCAGAAGTGACAACTGGTGTTA 1558 Query 1721 CCAAAATTGGGGACTATGAACTTCATGATCTTGTGCTTCTGGATAACCTGAGCTTTGGAG 1780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 CCAAAATTGGGGACTATGAACTTCATGATCTTGTGCTTCTGGATAACCTGAGCTTTGGAG 1618 Query 1781 TAATTATACGACTAGAGAATGAAGCTTTTCAGGTTCTTAAAGGGGTTCCTGACAGACCAG 1840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1619 TAATTATACGACTAGAGAATGAAGCTTTTCAGGTTCTTAAAGGGGTTCCTGACAGACCAG 1678 Query 1841 AGGTTGCTCTTGTCAAACTCAGAGAAATCAAATGCAAACTTGAGAAGAAAATCAATGTTC 1900 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1679 AGGTTGCTCTTGTCAAACTCAGAGAAATCAAATGCAAAATTGAGAAGAAAATCAATGTTC 1738 Query 1901 AAGATCGCTACAAAAATGTCATTGCTGTGAAAGATGACGTCAGAGTGATCGAGGGTCCTA 1960 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1739 AAGATCGCTACAAAAATGTCATTGCTGTGAAAGATGACGTCAGAGTCATCGAGGGTCCTA 1798 Query 1961 GCAAAGGTAAACAAGGTCCTGTAAAGCATATCTACAAAGGAGTCTTATTTATATATGATC 2020 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1799 GCAAAGGTAAACAAGGTCCGGTGAAGCATATCTACAAAGGAGTCTTATTTATATATGATC 1858 Query 2021 GACATCACCTTGAGCATGCTGGATTTATCTGCGCTAAATGCACATCATGCATTGTTGTTG 2080 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1859 GGCATCACCTTGAGCATGCTGGATTTATCTGCGCTAAATGCACATCATGCATTGTTGTTG 1918 Query 2081 GTGGATCACGTTCTGGTGCTAATAGAAATGGTGGTGATTCGCTTTCAAGGTATGGCAATT 2140 |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 1919 GTGGATCACGTTCTGGCGCTAATAGAAATGGTGGTGATTCTTTTTCAAGGTATGGCAATT 1978 Query 2141 TCAAGGCACCTGCCCCAGTACCCTCATCTCCAGGAAGATTTCAACGTGGCAGAGGCGGAG 2200 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1979 TCAAGGCACCTGCCCCAGTACCCTCATCCCCAGGAAGATTTCAACGTGGCAGAGGCGGAG 2038 Query 2201 GATATAATAACTCTGGAGGGAGGCATGGGGGTGGAAGAGGACGGGGAGACGATTCTTTAT 2260 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 2039 GATATAATAACTCTGGAGGGAGGCATGGGGGCGGAAGAGGACGGGGAGACGATTCTTTGT 2098 Query 2261 TGGGTACTACTGTTAAAATCCGTCTAGGACCTTTCAAGGGGTATAGGGGACCTGTAGTAG 2320 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2099 TGGGTACTACTGTTAAGATCCGTCTAGGACCTTTCAAGGGGTATAGGGGACCTGTAGTAG 2158 Query 2321 AAGTGAAAGGAAATTCAGTGCGTGTAGAACTTGAGATGAAGATTGTGACAG 2371 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2159 AAGTGAAAGGAAATTCAGTGCGTGTAGAACTTGAGATGAAGATTGTGACAG 2209 > Ahg482364 jgi|Araly1|482364|fgenesh2_kg.4__1424__AT2G34210.1 Length=2937 Score = 1520 bits (823), Expect = 0.0 Identities = 1260/1472 (86%), Gaps = 26/1472 (2%) Strand=Plus/Plus Query 626 TTGAGCAACAAGCGCTTTTGCCATCAGTCCGTGATCCGAAATTGTGGATGGTGAAATGTG 685 ||||||||||||||||||||||||||||||| || |||||||||||| |||| ||||||| Sbjct 428 TTGAGCAACAAGCGCTTTTGCCATCAGTCCGCGACCCGAAATTGTGGTTGGTCAAATGTG 487 Query 686 CGATTGGCCGTGAAAGGGAGGTTGCTGTTTGTCTTATGCAAAAATTTATAGATCGAGGAG 745 |||||||||||||||| || |||||||||||||||||||||||| | |||||| ||||| Sbjct 488 CGATTGGCCGTGAAAGAGAAGTTGCTGTTTGTCTTATGCAAAAAATCATAGATAGAGGAT 547 Query 746 CTGATTTGCA-GATTAGATCTGTTGTTGCCCTTGACCATCTT-AAGAATTTTATATATGT 803 | || || || ||||||||||| | |||||||||| |||||| || || | | |||| | Sbjct 548 CAGAGTT-CAAGATTAGATCTGCTATTGCCCTTGATCATCTTCAA-AACTATGTATACAT 605 Query 804 TGAAGCAGACAAGGAAGCTCATGTGAAAGAGGCAATCAAGGGCATGAGGAATATATATGC 863 |||||| || | ||||||||||||||||||||| |||||||||||| ||||||| ||||| Sbjct 606 TGAAGCGGATATGGAAGCTCATGTGAAAGAGGCTATCAAGGGCATGCGGAATATTTATGC 665 Query 864 TAATCAGAAGATCTTACTTGTCCCGATAAGAGAAATGACAGATGTTCTTTCTGTTGAGAG 923 |||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| || Sbjct 666 TAATCAGAAGATTTTACTTGTCCCCATAAAAGAAATGACAGATGTTCTTTCTGTTGAAAG 725 Query 924 CAAAGCCATTGATCTATCACGGGATACCTGGGTTAGAATGAAAATCGGGACGTATAAAGG 983 ||||| || |||||||| || ||||| ||||||||||||||| | |||| ||||| || Sbjct 726 TAAAGCAATCGATCTATCCCGTGATACATGGGTTAGAATGAAACTTGGGATATATAAGGG 785 Query 984 TGATCTTGCAAAGGTAGTTGATGTTGATAATGTGCGTCAGAGGGTCACAGTCAAGTTAAT 1043 |||||| || |||| ||||||||||||||||||||| ||||||||||||||||||| || Sbjct 786 TGATCTAGCTCAGGTGGTTGATGTTGATAATGTGCGTAAGAGGGTCACAGTCAAGTTGAT 845 Query 1044 CCCAAGAATTGATCTGCAGGCACTAGCCAGTAAGCTGGACGGAAGAGA-AGTTTCAAAGA 1102 ||||||||||||||||||||| ||||||| ||||||||| |||||||| | | |||| || Sbjct 846 CCCAAGAATTGATCTGCAGGCTCTAGCCAATAAGCTGGAAGGAAGAGAGAATGTCAA-GA 904 Query 1103 AAAAAGCCTTTGTTCCACCTCCACGTTTCATGAACATTGATGAAGCGAGGGAACTGCACA 1162 | ||||| |||| |||||||||||||||||||||||||||||| || |||||||| |||| Sbjct 905 AGAAAGCTTTTGCTCCACCTCCACGTTTCATGAACATTGATGAGGCAAGGGAACTTCACA 964 Query 1163 TACGTGTTGAGCGTCGGCGTGATCACA-TGACTGGTGATTACTTTGAAAATATTGGTGGC 1221 |||||||||||| |||||||||| || |||| ||||| |||||| ||||| | ||| Sbjct 965 TACGTGTTGAGCACCGGCGTGATC-CAATGACGGGTGACCCCTTTGAGAATATCGATGGT 1023 Query 1222 ATGCTTTTCAAAGATGGGTTTCATTACAA-ACAAGTATC-ATTGAAGTCCATCACTGTTC 1279 ||||||||||||||||| |||| |||||| | ||||||| | |||||| || ||| || Sbjct 1024 ATGCTTTTCAAAGATGGTTTTCTTTACAAGA-AAGTATCGAC-GAAGTCAATTGCTGCTC 1081 Query 1280 AGAATGTTACACCAACTTTTGACGAACTTGAAAAATTCAATAAACCAAGTGAAAATGGAG 1339 ||||| |||||||||| || || |||||||||| |||||| | ||||| ||||||||| | Sbjct 1082 AGAATATTACACCAACCTTCGATGAACTTGAAAGATTCAAGAGACCAAATGAAAATGGGG 1141 Query 1340 AGGGCGACTTTGGTGGTCTGTCAACATTATTTGCAAACAGAAAGAAAGGTCATTTCATGA 1399 || |||||| | || || || || ||||||||||| |||||||| ||||||||||||| Sbjct 1142 AGATCGACTTCGTTGATCCCTCCACTTTATTTGCAAATAGAAAGAAGGGTCATTTCATGA 1201 Query 1400 AGGGTGATGCAGTTATTGTTATCAAGGGGGATCTGAAAAACTTGAAGGGTTGGGTTGAGA 1459 | |||||||| ||||||||||||||||||||||| | |||||| ||||||||| |||||| Sbjct 1202 AAGGTGATGCGGTTATTGTTATCAAGGGGGATCTTATAAACTTAAAGGGTTGGATTGAGA 1261 Query 1460 AAGTAGATGAAGAAAATGTCCTTATCAGATCAGAAG-TGAAAGGTCTCCCTGATCCTCTT 1518 ||||||||||||| ||||| ||||||||||| ||| |||||||||| ||| ||||| || Sbjct 1262 AAGTAGATGAAGAGAATGTTCTTATCAGATC-GAATATGAAAGGTCTTCCTAATCCTATT 1320 Query 1519 GCTGTAAATGAGAGAGAGCTTTGCAAGTACTTTGAACCTGGAAATCATGTGAAGGTTGTC 1578 || ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 1321 GCGGTAAATGAGAGAGAGCTTTGCAAATACTTTGAACCTGGAAATTTTGTGAAGGTTGTG 1380 Query 1579 TCTGGGACCCATGAAGGAGCAACAGGCATGGTTGTCAAAGTTGATCAACACGTGCTTATC 1638 ||||| | ||||||||||| ||| |||||| |||||||||||||||| || |||||||| Sbjct 1381 TCTGGCATCCATGAAGGAGGAACTGGCATGATTGTCAAAGTTGATCAGCATATGCTTATC 1440 Query 1639 ATTCTGTCTGACACGACCAAAGAACATGTCCGAGTGTTTGCTGATCATGTTGTTGAGAGT 1698 ||||||||||| || |||||||||||| | || || || ||||||||||| | ||||| Sbjct 1441 ATTCTGTCTGATACAACCAAAGAACATATTCGCGTCTTCGCTGATCATGTCGCCAAGAGT 1500 Query 1699 TCAGAAGTGAC-AACTGGTGTTACCAAAATTGGGGACTATGAACTTCATGATCTTGTGCT 1757 |||||||||| || || ||| || |||||||| |||||||||||||||||||||||| | Sbjct 1501 GCAGAAGTGACTAA-TGCTGTCACAAAAATTGGAGACTATGAACTTCATGATCTTGTGAT 1559 Query 1758 TCTG-GATAACCTGAGCTTTGGAGTAATTATACGACTAGAGAATGAAGCTTTTCAGGTTC 1816 ||| | | || |||||||||||||||| ||| ||| || | ||||||| | ||| ||| Sbjct 1560 TCTAAG-TGACTTGAGCTTTGGAGTAATCATAAAACTTGATAGTGAAGCTATCCAGATTC 1618 Query 1817 TTAAAGGGGTTCCTGACAGAC-CAGAGGT-TGCTCTTGTCAAA-CTCAGAGAAATCAAAT 1873 ||||||||||||||||||| | ||||||| | || |||||||| | ||| ||||| |||| Sbjct 1619 TTAAAGGGGTTCCTGACAG-CTCAGAGGTCT-CTATTGTCAAAGC-CAGCGAAATAAAAT 1675 Query 1874 GCAAACTT-GAGAAGAAAATCAATGTTCAAGATCGCTACAAAAATGTCATTGCTGTGAAA 1932 |||| || | |||||||| |||||||||||| || |||||||||||||| || |||||| Sbjct 1676 ACAAAATTTG-GAAGAAAAGCAATGTTCAAGACCGTTACAAAAATGTCATCGCGGTGAAA 1734 Query 1933 GATGACGTCAGAGTGATCGAGGGTCCTAGCAAAGGTAAACAAGGTCCTGTAAAGCATATC 1992 |||| ||||| || || ||||||||||||||||||||||||||||| || ||| ||| Sbjct 1735 GATGTTGTCAGGGTCATTGAGGGTCCTAGCAAAGGTAAACAAGGTCCAGTGGTGCAAATC 1794 Query 1993 TACAAAGGAGTCTTATTTATATATGATCGACATCACCTTGAGCATGCTGGATTTATCTGC 2052 ||||||||||| || |||||| |||| || ||| || |||| || |||||||||||||| Sbjct 1795 TACAAAGGAGTGTTGTTTATACATGACCGGCATAACTTTGAACACACTGGATTTATCTGC 1854 Query 2053 GCTAAATGCACATCATGCATTGTTGTTGGTGG 2084 ||| |||| |||| || || |||||||||| Sbjct 1855 ACTAGATGCTCATCTTGTGTTCTTGTTGGTGG 1886 Score = 189 bits (102), Expect = 1e-46 Identities = 329/436 (75%), Gaps = 25/436 (6%) Strand=Plus/Plus Query 2809 ATGACACCAAGCTCGGCTTCATACTTACCTGGTACTCCCGGAGGACAACCAATGACTCCT 2868 |||||||||||||| ||||| ||| ||||| || |||||||||||||||||||||||| Sbjct 2500 ATGACACCAAGCTCAGCTTCCTACCTACCTACCACACCCGGAGGACAACCAATGACTCCT 2559 Query 2869 GGAACTGGCCTCGATGTCATGTCTCCTG-TTATAGGTGGGGATGCTGAAGCATGGTTCAT 2927 ||||| | |||||||||||||||| || || ||||||| ||||| ||| || |||| | Sbjct 2560 GGAACCGATCTCGATGTCATGTCTCATGATT-TAGGTGGAGATGCAGAAACAAGGTTTGT 2618 Query 2928 GCCCGATATTTTGGTTGACATACACAAGGCTGGAGAGGACACCGATGTGGGCGTCATCCG 2987 ||| | ||||||||| || ||||||| ||||||||||| | | || |||||||| Sbjct 2619 GCCTGGTATTTTGGTCAACGTACACAAAGCTGGAGAGGATAGTAAACCCGGTGTCATCCG 2678 Query 2988 AGATGTT-T-C-GGATGGAACGTGTAAAGT-GTCTCTCGGGTC-CAGCGGTGAAGGTGAC 3042 ||||||| | | |||||| | ||| ||| | | || || | ||| |||||||| | Sbjct 2679 AGATGTTCTTCCGGATGGCTCATGTGTAGTCG-CACTTGGA-CACAGAGGTGAAGGCGGG 2736 Query 3043 ACTATAATGGCC-CTCCCAAGCGAACTGGAGA-TAATTCCTCCGAGGAA-ATCCGATCGT 3099 || |||||||| | | || | || || || || || ||| | ||| | | || ||| Sbjct 2737 ACGATAATGGCGACACAGAA-CAAAGTG-AGCCTAGTTTGTCCAAAGAAGAAC-GAACGT 2793 Query 3100 GTCAAAATAGTTGGCGGTCA-GTATCGTGGGTCTACAGGTAAGCTGATCGG--AATCGAC 3156 || || || |||| || || |||| |||| || ||||||||| | || || || ||| Sbjct 2794 GTGAAGATTCTTGGAGG-CAAGTATGGTGGTTCAACAGGTAAGGTCATTGGTGAA--GAC 2850 Query 3157 GGGTCTGACGGTATCGTTAAGATAGATGATAA-TCTTGACGTCAAGATTCTGGACCTGGC 3215 || | ||| |||| |||||| ||||||| || ||| || |||||||| || | ||||| Sbjct 2851 GGATGGGACAGTATAGTTAAGCTAGATGA-AAGTCTCGATGTCAAGATAATGAAGCTGGC 2909 Query 3216 CT-TATTAGCCAAGTT 3230 | ||||||||||||| Sbjct 2910 -TATATTAGCCAAGTT 2924 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 128748769459 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5