BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08390.1
Length=1516
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489749 jgi|Araly1|489749|fgenesh2_kg.6__2883__AT4G08390.2 1862 0.0
Ahg476914 jgi|Araly1|476914|fgenesh2_kg.2__2044__AT1G77490.1 686 0.0
Ahg895293 jgi|Araly1|895293|Al_scaffold_0006_3289 291 1e-77
> Ahg489749 jgi|Araly1|489749|fgenesh2_kg.6__2883__AT4G08390.2
Length=1362
Score = 1862 bits (1008), Expect = 0.0
Identities = 1257/1373 (92%), Gaps = 34/1373 (2%)
Strand=Plus/Plus
Query 70 AATTACTATTATACCCCTCAGAAAAATGGCAGAGCGTGTGTCTCTCACACTCAACGGAAC 129
||||||||||||| ||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct 1 AATTACTATTATA-CCC-CA-AAAAATGACAGAGCGTGTGTCTCTCACACTCAACGGAAC 57
Query 130 CCTCCTTTCTCCTCCTCCCacaacaacaacaacaacaaTGtcttcttctctccgatctac 189
||||| || | ||||||||| ||| || |||||||||||||||||||||||||| || ||
Sbjct 58 CCTCC-TT-T-CTCCTCCCAAAACCACCACAACAACAATGTCTTCTTCTCTCCGTTCCAC 114
Query 190 caccgccgcttctcttctcctccgctcctcctcctcctcctccagatccactctcactct 249
||||| |||||||| ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 115 CACCGTCGCTTCTCGTCTCCTCCG---CTCCTCCTCCTCCACCAGATCCACTCTCACTCT 171
Query 250 ctccgcttcctcctctctctccttcgtcagatctctcgtctcttctccacgtctctcttc 309
|||||||||| | ||||||||||||| ||||||||||||||||||||||| | |||| ||
Sbjct 172 CTCCGCTTCCACTTCTCTCTCCTTCGCCAGATCTCTCGTCTCTTCTCCAC-T-TCTC-TC 228
Query 310 ttcttcatccc-t--ctct-cAGAAGAAATATCGAATTGCGTCGGTGAATCGGAGTTTCA 365
||||||| ||| | | | ||||||| | ||||| || |||||||||||||||| ||||
Sbjct 229 TTCTTCA-CCCTTGGATTTCCAGAAGAGACATCGAGTTTCGTCGGTGAATCGGAGCTTCA 287
Query 366 ACTCCACCACCGCCGCTACTAAATCTTCATCTTCAGATCCTGATCAGTTGAAGAACGCTA 425
|||||||| |||| ||||||||| |||| ||||||||||||||||||| || ||||||
Sbjct 288 ACTCCACCGCCGCAACTACTAAATGTTCAGCTTCAGATCCTGATCAGTTAAAAAACGCTC 347
Query 426 GAGAAGATATCAAAGAGCTTCTCAGCACCAAATTCTGCCATCCGATTTTGGTTAGATTAG 485
|||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||
Sbjct 348 GAGAAGATATCAAAGAGCTTCTCAACACCAAATTCTGCCATCCAATTTTGGTTCGATTAG 407
Query 486 GTTGGCATGATGCTGGTACGTATAACAAGAACATTAAGGAATGGCCACAAAGAGGTGGAG 545
| ||||||||||||||||| || || ||||||||||||||||||||||| ||||||||||
Sbjct 408 GGTGGCATGATGCTGGTACATACAATAAGAACATTAAGGAATGGCCACAGAGAGGTGGAG 467
Query 546 CTAATGGAAGTTTGAGATTCGATATTGAGCTTAAACATGCTGCTAACGCTGGTCTTGTGA 605
||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||
Sbjct 468 CTAATGGAAGTTTGAGATTTGAGATTGAGCTTAAGCATGCTGCTAATGCTGGTCTTGTGA 527
Query 606 ATGCTTTAAACTTGATTAAGGATATCAAAGAGAAATACTCTGGGATCAGTTATGCTGATT 665
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 528 ATGCTTTAAACTTGATTAAGGATATCAAAGAGAAGTACTCTGGGATCACTTATGCTGATT 587
Query 666 TGTTCCAGTTAGCTAGTGCTACTGCTATAGAGGAAGCTGGAGGACCGAAAATACCGATGA 725
| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 588 TATTCCAATTGGCTAGTGCTACTGCTATAGAGGAAGCTGGAGGACCTAAAATACCGATGA 647
Query 726 AATATGGTAGAGTTGATGCCTCTGGTCCTGAGGATTGTCCAGAAGAAGGAAGGCTTCCAG 785
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 648 AATATGGAAGAGTTGATGCCTCTGGTCCTGAGGATTGTCCTGAAGAAGGAAGGCTTCCTG 707
Query 786 ATGCTGGTCCTCCTTCACCTGCTACTCATCTCAGAGAAGTTTTTTACAGAATGGGATTAG 845
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 708 ATGCTGGTCCTCCTTCACCTGCTAATCATCTCAGAGAAGTTTTTTACAGAATGGGACTAG 767
Query 846 ATGACAAGGACATAGTTGCATTATCTGGTGCTCACACGTTAGGAAGATCTAGGCCAGAAC 905
| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 768 ACGACAAGGACATAGTTGCGTTGTCTGGTGCTCACACGTTAGGAAGATCTAGGCCAGAAC 827
Query 906 GTAGTGGTTGGGGGAAGCCTGAGACGAAGTACACGAAAGAAGGACCTGGAGCACCAGGAG 965
||||||||||||||||||| ||||| || ||||||||||| ||||| || ||||||||||
Sbjct 828 GTAGTGGTTGGGGGAAGCCAGAGACAAAATACACGAAAGAGGGACCAGGCGCACCAGGAG 887
Query 966 GACAGTCATGGACACCAGAGTGGCTGAAGTTTGATAATTCTTACTTCAAGGAGATCAAGG 1025
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 888 GACAGTCATGGACACCAGAGTGGCTGAAGTTTGACAATTCTTACTTCAAGGAAATCAAGG 947
Query 1026 AAAAGAGAGATGAAGATCTCCTTGTCCTACCCACTGATGCTGCCATCTTCGAAGATTCTT 1085
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 948 AAAAGAGAGATGAAGATCTCCTTGTCCTACCCACTGATGCTGCCATCTTTGAAGATTCTT 1007
Query 1086 CTTTCAAGGTCTATGCTGAAAAGTATGCTGCAGATCAGGATGCATTTTTCAAGGATTACG 1145
|||||||| |||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 1008 CTTTCAAGATCTATGCTGAGAAGTATGCTGCAGATCAGGATGCCTTCTTCAAGGATTACG 1067
Query 1146 CTGTAGCCCATGCGAAGCTCAGCAATCTTGGAGCAGAATTTAACCCTCCGGAGGGTATCG 1205
||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct 1068 CTGTAGCCCATGCGAAGCTCAGCAATCTTGGAGCAAAATTTGACCCTCCTGAGGGTATCG 1127
Query 1206 TTATCTAATGGGGGCACATAATTTACTCAACC---A--------G-ACTTATGATTTTAG 1253
|||||||| |||| ||| |||||||||| ||| | | ||||||||| | ||
Sbjct 1128 TTATCTAACGGGG-CACCTAATTTACTCTACCTCTATTTAAACAGGACTTATGATAT-AG 1185
Query 1254 AGAAACGTAGTTCAATAATGAAAGAGAAGAAAAAGTTGACGGAGAACTTTTCATGCGAGT 1313
||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| |||
Sbjct 1186 AGAAACGTAGTTCAATAATGATAGAGAAGAAAAAGTTGTTGGAGAACTTTTCCTGCAAGT 1245
Query 1314 ACTTTTCGAGATACCTTTTGGACAATGTTTCTGGCTGTTCAAAGGATTTTGTTTAGCCGA 1373
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 ACTTTTCGAGATATCTTTTGGACAATGTTTCTGGCTGTTCAAAGGATTTTGTTTAGCCGA 1305
Query 1374 AAGTATTTGATCGTTTTCATGGTTTTGGGCTTT--CATGTTTTTTCTTGTAAT 1424
||||||||||||||||||||||||||||||||| || |||| ||||| |||
Sbjct 1306 AAGTATTTGATCGTTTTCATGGTTTTGGGCTTTTACAAATTTTGTCTTG-AAT 1357
> Ahg476914 jgi|Araly1|476914|fgenesh2_kg.2__2044__AT1G77490.1
Length=1568
Score = 686 bits (371), Expect = 0.0
Identities = 676/822 (82%), Gaps = 26/822 (3%)
Strand=Plus/Plus
Query 396 CTTCAGATCCTGATCAGTTGAAGAA-CGCTAGAGAAGATATCAAAGAGCTTCTCAGCACC 454
|||| ||| | | ||| ||| |||| ||||| |||||||||||||| |||||| | ||
Sbjct 353 CTTCTGATGCAGCTCAATTG-AGAAGCGCTAAAGAAGATATCAAAGTTCTTCTCCGGACT 411
Query 455 AAATTCTGCCATCCGATTTTGGTTAGATTAGGTTGGCATGATGCTGGTACGTATAACAAG 514
|| || |||||||| ||||||||||| || || ||||| ||||||||||| | |||||||
Sbjct 412 AAGTTTTGCCATCCCATTTTGGTTAGGTTGGGATGGCACGATGCTGGTACATTTAACAAG 471
Query 515 AACATTAAGGAATGGCCACAAAGAGGTGGAGCTAATGGAAGT-TTGAGATTCGATATTGA 573
| |||| |||| |||||||||||||||||||||||||||||| || || || || |||
Sbjct 472 AGCATTGAGGAGTGGCCACAAAGAGGTGGAGCTAATGGAAGTCTT-AGGTTTGAGGCTGA 530
Query 574 GCTTAAACATGCTGCTAACGCTGGTCTTG-TGAATGCTTTAAA-CTTGATTAAGGATATC 631
|||||| |||||||| || || ||||| | | ||||||||||| || ||| || ||||
Sbjct 531 GCTTAAGCATGCTGCAAATGCCGGTCT-GCTTAATGCTTTAAAGCTC-ATTCAGCCTATC 588
Query 632 AAAGAGAAATACTC-TGGGATCAGTTATGCTGATTTGTTCCAGTTAGCTAGTGCTACTGC 690
||||| || || || | ||| |||||| || || ||||||||||||||||| |||||
Sbjct 589 AAAGACAAGTA-TCCTAACATCTCTTATGCGGACTTATTCCAGTTAGCTAGTGCCACTGC 647
Query 691 TA-TAGAGGAAGCTGGAGGACC-GAAAATACCGATGAAATATGGTAGAGTTGATGCCTCT 748
| ||||||| ||||| || || |||| | |||||||||||||| |||||||||| | |
Sbjct 648 -AGTAGAGGAGGCTGGTGGTCCTGAAA-TCCCGATGAAATATGGGAGAGTTGATGTCG-T 704
Query 749 GGT-CCTGAGGATTGTCCAGAAGAAGGAAGGCTTCCAGATGCTGGTCCTCCTTCACCTGC 807
| ||||| | ||||||||||||||||| || || |||||||| ||||| ||||| ||
Sbjct 705 AGCACCTGAACAGTGTCCAGAAGAAGGAAGACTCCCTGATGCTGGACCTCCCTCACCAGC 764
Query 808 T-ACTCATCTCAGAGAAGTTTTTTACAGAATGGGATTAGATGACAAGGACATAGTTGCAT 866
| | |||| | ||||| || ||||||||||||||| ||||||||||||| |||||||| |
Sbjct 765 TGA-TCATTTGAGAGATGTATTTTACAGAATGGGACTAGATGACAAGGAAATAGTTGCCT 823
Query 867 TATCTGGTGCTCACACGTTAGGAAGATCTAGGCCAGAACGTAGTGGTTGGGGGAAGCCTG 926
| |||||||| || || ||||||||| | |||||||| ||||| |||||||| || ||||
Sbjct 824 TGTCTGGTGCACATACCTTAGGAAGAGCCAGGCCAGACCGTAGCGGTTGGGGAAAACCTG 883
Query 927 AGACGAAGTACACGAAAGAA-GGACCTGGAGCACCAGGAGGACAGTCATGGACACC-AGA 984
|||| |||||||||||| | ||||| |||| | |||||||||||||||||||| | |
Sbjct 884 AGACAAAGTACACGAAA-ACTGGACCAGGAGAAGCAGGAGGACAGTCATGGACAGTGAAA 942
Query 985 GTGGCTGAAGTTTGATAATTCTTACTTCAAGGAGATCAAGGAAAAGAGAGATGAAGATCT 1044
||||| |||||||| ||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct 943 -TGGCTTAAGTTTGACAATTCTTACTTCAAGGATATCAAAGAAAAGAGGGACGAAGATCT 1001
Query 1045 CCTTGTCCTACCCACTGATGCTGC-CATCTTCGAAGATTCTTCTTTCAAGGTCTATGCTG 1103
|| || |||||||||||||||| | | ||||||||| |||| |||||| |||||| |
Sbjct 1002 TCTGGTGTTACCCACTGATGCTGCAC-TATTCGAAGATCCTTCATTCAAGAACTATGCGG 1060
Query 1104 AAAAGTATGCTGCAGATCAGGATGCATTTTTCAAGGATTACGCTGTAGCCCATGCGAAGC 1163
| |||||||||| ||||| || ||||||||||||||||||||||| ||| ||||| ||||
Sbjct 1061 AGAAGTATGCTGAAGATCCGGCTGCATTTTTCAAGGATTACGCTGAAGCTCATGCCAAGC 1120
Query 1164 TCAGCAATCTTGGAGCAGAA-TTTAACCCTCCGGAGGGTATC 1204
|||||||||| || || ||| ||| | ||||| ||||| |||
Sbjct 1121 TCAGCAATCTCGGCGC-GAAATTTGATCCTCCCGAGGGCATC 1161
> Ahg895293 jgi|Araly1|895293|Al_scaffold_0006_3289
Length=288
Score = 291 bits (157), Expect = 1e-77
Identities = 235/273 (86%), Gaps = 3/273 (1%)
Strand=Plus/Plus
Query 382 TACTAAATCTTCATCTTCAGATCCTGATCAGTTGAAGAA-CGCTAGAGAAGATATCAAAG 440
||| |||| |||| ||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 18 TACAAAATATTCAGCTTGGGATCCTGATCAGTTGAA-AAGTGCTAGAGAAGATATCAAAG 76
Query 441 AGCTTCTCAGCACCAAATTCTGCCATCCGATTTTGGTTAGATTAGGTTGGCATGATGCTG 500
|||| |||| ||||||||||||||| ||||||||| | ||||| |||||||||| ||
Sbjct 77 AGCTGCTCAATTTCAAATTCTGCCATCCAATTTTGGTTCGGTTAGGGTGGCATGATGTTG 136
Query 501 GTACGTATAACAAGAACATTAAGGAATGGCCACAAAGAGGTGGAGCTAATGGAAGTTTGA 560
| |||| |||||||||||| | || ||| ||||| ||||||||||||| ||||||| | |
Sbjct 137 GAACGTTTAACAAGAACATCACGGTATGTCCACAGAGAGGTGGAGCTATTGGAAGTCTCA 196
Query 561 GATTCGATATTGAGCTTAAACATGCTGCTAACGCTGGTCTTGTGAATGCTTTAAACTTGA 620
||| || |||| |||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 197 TATTTGAGATTGCGCTTAAACATGCTGCTAATGCCGGTCTTGTAAATGCTTTAAACTTGA 256
Query 621 TTAAGGATATCAAAGAGAAATACTCTGGGATCA 653
|||||||||||||||| ||||||||| || |||
Sbjct 257 TTAAGGATATCAAAGAAAAATACTCTTGG-TCA 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56754465050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5