BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G08510.1 Length=2820 Score E Sequences producing significant alignments: (Bits) Value Ahg489756 jgi|Araly1|489756|fgenesh2_kg.6__2890__AT4G08510.1 3681 0.0 Ahg913497 jgi|Araly1|913497|Al_scaffold_0001_3751 649 0.0 > Ahg489756 jgi|Araly1|489756|fgenesh2_kg.6__2890__AT4G08510.1 Length=2766 Score = 3681 bits (1993), Expect = 0.0 Identities = 2584/2849 (91%), Gaps = 122/2849 (4%) Strand=Plus/Plus Query 1 CCTTGAACAAGTTTTCTC---CAAACAAACCaaaaaaaaaaaaaCATTTCGCCTCC-T-T 55 |||||||||||||||||| ||||||| ||||||||||||||||||||||||| | | Sbjct 1 CCTTGAACAAGTTTTCTCAAAGAAACAAAAAAAAAAAAAAAAAACATTTCGCCTCCTTCT 60 Query 56 C-TCTTCTTCTTCGCTACCAGTCTCTTCTCTCTCGCACCATCGCAAAAACCCTAATTTTT 114 | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 61 CTTCTTCTTCTTCTCTACCAGTCTCTTCTCTCTCGCACCATCGCAAAAACCCTAA--TTT 118 Query 115 CTCTTCGATTTTCTCTTCTCACAAACCCTAATTGTTTCTTCCTCCCACCACTCGCTTTCT 174 |||||||||||||||||||||||||||||||||| || | |||||||||||||| | Sbjct 119 CTCTTCGATTTTCTCTTCTCACAAACCCTAATTG----TT--T-CCACCACTCGCTTTTT 171 Query 175 CCTTCCATCGTTTGGtttttttAATAAGTTTCTCTCTTTTTTCTTGTTTGGGGAAGAAGC 234 ||||||||||||||| ||| || |||| || |||| || ||||||||||||||||| Sbjct 172 CCTTCCATCGTTTGGGTTTGTT--TAAG-TT-TCTC----TT-TTGTTTGGGGAAGAAGC 222 Query 235 CATTGGTTTCTTTAAACGATTGAATCTATAAAActtcttctttttcttctgggttctgtg 294 ||||| ||||||| | ||||||||||||||||| | |||||| | | || Sbjct 223 CATTGTTTTCTTTGAGCGATTGAATCTATAAAA------C---TTCTTC-----T-T-TG 266 Query 295 ttcttcgtctctttcGTTGAACCCGTTGTTTCGATTTTCTTTCTTCTGAGGGAGAttttt 354 |||||||||||||||||||||||||||||||||||||||||| ||||| |||| | ||| Sbjct 267 TTCTTCGTCTCTTTCGTTGAACCCGTTGTTTCGATTTTCTTTGTTCTG-GGGA-A-ATTT 323 Query 355 tttCTGTTGATGCGTTGATACGAATTTTGCCGTTGTTTTGTTGAATTCTAGGAATAGTGA 414 |||||| ||||||||||| ||||||| |||||||||| |||||||||||||| |||||| Sbjct 324 TTTCTGGTGATGCGTTGAAACGAATTCTGCCGTTGTTGTGTTGAATTCTAGGGCTAGTGA 383 Query 415 TTAGGTGGTTAGGGTTTCTGGTTTAGTG-C--C-C-----A-TCAGGCTAGTTCCCTTAT 464 ||||||| |||||||||| || |||||| | | | | ||||||| ||||| |||| Sbjct 384 TTAGGTGATTAGGGTTTC-GGGTTAGTGACATCACTGTGAATTCAGGCTGGTTCCTTTAT 442 Query 465 TGGTGGATTT--A-GATGATG---ATGATGATCTTCTAGGTTGGTTTTAGA--GTGTGTC 516 |||||| ||| | ||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 443 TGGTGGGTTTGGATGATGATGATTATGATGATCTTCTAGGTTGGTCTTAGAGTGTGTGTC 502 Query 517 TTAGCCATCTGTGTGAGAGATGGATGTGTAGAGGGTTTA-ATCATCATTGAGACGATTCG 575 | ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 503 TAAGCCATCTGTGGGAGAGATGGATGTGTAGAGGGTTTTTATCATCATTGAGACGATTCG 562 Query 576 ATTCATTTGGTTTTGATTTGAGATTGGATTTTTCTTCCCTGCCCTTTGTGGTAGTAGGT- 634 |||||||||||||||| || ||||||||| ||||||||||||||||||| |||||| Sbjct 563 ATTCATTTGGTTTTGA---GA--TTGGATTTT-CTTCCCTGCCCTTTGTGGTGGTAGGTT 616 Query 635 GATTTAGATGTTTAGGAAGAATTAAGAAGAGTTCTTGAGAGTGATAGAGGTCATTGAATT 694 |||| |||||||||||||||| ||| || ||||||||||| | || | | Sbjct 617 GATT-AGATGTTTAGGAAGAA----GAA---TTATTGAGAGTGAT-----T--TT-A-T- 658 Query 695 GTTCTTTTTATCTGATGAAGTATAGCTTTCATAATGGAAAAACGCG---AACCCTCTTTA 751 || ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 659 ---CT--------GATGAAGTATAGCTTTCATAATGGAAAAACGCGGTGAACCCTCTTTA 707 Query 752 GTTCCTGAATGGTTGAGAAGTTCAGGACATGGTTCTGGTGTTGGGAGTTCAAATTCT-CT 810 || ||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 708 GTACCTGAATGGTTGAGAAGTTCAGGACATGGTTCTGGTGTTGGGAGTTCAAAT-CAGCT 766 Query 811 TTCAG-ATTCTTTACGTAATAGCAAGAATAGGAATGCTAGGAGCAGAAGTGATGCTGATT 869 || | || |||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 767 TTTATCAT-CTTTACGTAATAGCAAGAATAGGAATTCTAGGAGCAGAAGTGATGTTGATT 825 Query 870 CAGTTGGGTCTCCTTTTCTCGACCGGTCTTCTTCCACCAATACGAGGAGGGGATCTAGTA 929 ||||| |||||||||||||||| ||||||||||| |||||||| |||||||||||||||| Sbjct 826 CAGTTCGGTCTCCTTTTCTCGATCGGTCTTCTTCTACCAATACAAGGAGGGGATCTAGTA 885 Query 930 ATGGGTCTACAAAACATGCATATAGTAGTTTCAACTTTAATAGGAGCAACAGAGATAAAG 989 |||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 886 ATGGTTCTACCAAACATGCATATAGTAGTTTCAACTTCAATAGGAGCAACAGAGATAAAG 945 Query 990 ATCGGAGCAGGGAGAAGGATAGGATGAGCTACATGGATCCATGGGACAATGATAGTTCTA 1049 |||||||||||||||| |||||| ||||||||||||||||||||||| |||| | |||| Sbjct 946 ATCGGAGCAGGGAGAAAGATAGGTTGAGCTACATGGATCCATGGGACCATGACACTTCTC 1005 Query 1050 TGCCTTTTGGAACCTTCTTGATTGGTAGGGGAGAGGAGCCACTGAGACGATCACATTCAA 1109 |||||||||||||| || ||||||||| |||| |||||| |||||||||||||||||| | Sbjct 1006 TGCCTTTTGGAACCATCGTGATTGGTACGGGACAGGAGCAACTGAGACGATCACATTCCA 1065 Query 1110 TGACAACAAGGAAACAGGGAAACCATCTGGCTCAAGGATTTACAGTAGGATATAAAAATG 1169 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1066 TGACAACAAGGAAACAGGGCAACCATCTGGCTCAAGGATTTACAGTAGGATATAAAAATG 1125 Query 1170 GTGGAAACATTAATACTTTCAACGGACATGGTATACTTCCTGGAACTAGCCCTGTAAAGA 1229 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1126 GTGGAAACATTAATACTTACAACGGACATGGTATACTTCCTGGAACTAGCCCTGCAAAGA 1185 Query 1230 GCTCCAAAAGAATGGGTTTCAATAAGGATTTTCCTTTGCTTAGAGGTGAAGAGAGAAATG 1289 |||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 1186 GCTCCAAAAGAACAGGTTTCGATAAGGATTTTCCTTTGCTTAGAGCTGAAGAGAGAAATG 1245 Query 1290 GAGGCCCAGACGTTGTAAGAATCTCATCTCCTGGTCGAAGTCCTACTGCTCAGAGCTTGT 1349 ||||||||||||| |||||||| ||||||||| || |||||| |||||||||||||||| Sbjct 1246 GAGGCCCAGACGTCGTAAGAATAGCATCTCCTGTTCTAAGTCCAACTGCTCAGAGCTTGT 1305 Query 1350 CAGTTGCTAATCCAGCCTTGATTATCGGGGAAGGTTGGACATCGGCTCTGGCAGAGGTTC 1409 |||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 1306 CAGTTGGTAATCCAGCCTTGATTGTTGGGGAAGGTTGGACATCGGCTCTGGCAGAGGTTC 1365 Query 1410 CCAATGTTATTGAGAAGAGTGGTGGTGCTGAATCCCATGCTAATGTGGGTAATTCGGCTA 1469 | ||||||||||||||||||||| || | |||||| ||||||| |||| |||||||| Sbjct 1366 CAAATGTTATTGAGAAGAGTGGTACTGGT---TCCCATTCTAATGTTGGTAGTTCGGCTA 1422 Query 1470 CCTTATCTGG-ACCAGCTTGTCGTAACATGGCTGAAGCATTGGTGCAGGCTCCAGGAAGA 1528 ||||| | || |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1423 CCTTAAC-GGTACCAACTTGTCGTAACATGGCTGAAGCATTGGTGCAGGCTCCAGGAAGA 1481 Query 1529 ACTGGTACACCACCCCAGGCACAAACACTTGAGGACCGAGCTATTAGGCAATCTAGGCAG 1588 |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1482 ACTGTTACACCACCCCAGGCACAAACACTTGAGGACCGAGCTATTAGGCAGTCTAGGCAG 1541 Query 1589 TTGATACCGGTTGTGCCTTCAGCACCAAAGGGCTCAGTTCATAACTCTTCTGATAAATCC 1648 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1542 TTGATACCTGTTGTGCCTTCAGCACCAAAGGGCTCAGTTCATAACTCTTCTGATAAATCC 1601 Query 1649 AAGACCAAACCAATGTTTCGAAGTGGTGAAACCGGTCTTGCTTCTTCAAGAAATACCCAA 1708 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1602 AAGACCAAACCAATGTTTCGAAGTGGTGAAATCGGTCTTGCTTCTTCAAGAAATACCCAA 1661 Query 1709 CAGCAGTCCTCTGTGATGCTCGGTAATATGCAGTCTAATCCTGGTAGTCAGATCAAGCCT 1768 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1662 CAGCATTCCTCTGTGATGCTCGGTAATCTGCAGTCTAATCCTGGTAGTCAGATCAAGCCT 1721 Query 1769 GATACGACTAAGAAGCTGGTGATTCTCAAACCTGCTAGGGAAAATGGGGTAGTTGCTGGA 1828 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1722 GATACGACTAAGAAGCTGGTGATTCTCAAATCTGCTAGGGAAAATGGGGTAGTTGCTGGA 1781 Query 1829 GGTTCACCACCCAACAGCCGAGTTGCCGCTAGCCAGCCGACCACTGCCCCATCCACACAA 1888 ||||||||||||| |||||||| ||| |||||||||| ||||||||| ||||| |||||| Sbjct 1782 GGTTCACCACCCAGCAGCCGAGCTGCTGCTAGCCAGCTGACCACTGCTCCATCTACACAA 1841 Query 1889 TTTACTGCTTCTGTGAGAAGCACAAATGGTCCAAGGGATCTCAGGGGAGCTTCTGTAAAC 1948 |||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||| Sbjct 1842 TTTACTGCTTCTGTGAGAAGTACAAATGGTCCAAGGGAGCCCAGGGGAGCTTCTGTAAAC 1901 Query 1949 ATGTTAGCTGGAAAAGCCGCTGAAAAGAAACTTTCCTTGGCTCAAACTCAGAGCAGGCAT 2008 ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1902 ATGATAGCTGGAAAAACCGCTGAAAAGAAACTTTCCTTGGCTCAAACTCAGAGTAGGCAT 1961 Query 2009 GCATTTTACAGTGCTTTGAAGCAAAAAACATGTACGAACATCTCAACTGATCCATCAAAA 2068 ||||||| ||||||||||||||| ||||||| ||| |||||||||||||||||||||||| Sbjct 1962 GCATTTTTCAGTGCTTTGAAGCAGAAAACATCTACAAACATCTCAACTGATCCATCAAAA 2021 Query 2069 ACCAGCTCTTGCATCTTGTCTTCAGTGGAGGAACAGGCAAACAGTTCTAAGGAGCTTGTA 2128 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2022 ACCAGCTCTTGCATCTTGTCTTCAGTGGAGGAAAAGGCAAACAGTTCTAAGGAGCTTGTA 2081 Query 2129 GCTAGTGACCCTTCAAGTCCACAAGCTGCAGAAAGAGATGAAATCATGGAAAGTGTCGAG 2188 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2082 GCTAGTGACCCTTCAAGTCCACAGGCTGCAGAAAGAGATGAAATCATGGAAAGTGTCGAG 2141 Query 2189 AAAGTTTCTAACGTTGCAGAAAGGATTAGTAGATTTGAATCGGCAGTCCGTCCAGATCCA 2248 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2142 AAAGTTTCTGATGTTGCAGAAAGGATTAGTAGATTTGAATCGGCAGTCCGTCCAGATCCA 2201 Query 2249 AAAGAGGCTGCATTCCTTAAATCCCTTGGTTGGGATGAGAATGATAGCGACGAATACACC 2308 ||||||||||| ||||||||||||||||| |||||||| ||||| ||||| ||||||||| Sbjct 2202 AAAGAGGCTGCGTTCCTTAAATCCCTTGGGTGGGATGAAAATGACAGCGAAGAATACACC 2261 Query 2309 CACACAATGGAGGAGATGAGAGAATGGTGCAAGAAGTTCAAGCCATCACTGCTGCAGAAG 2368 | | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2262 CTCCCAATGGAGGAGATGATCGAATGGTGCAAGAAGTTCAAGCCATCACTGCTGCAGAAG 2321 Query 2369 CTGCCTATCATATAAGAAGCAACTGAGGACATAGCTCCCGACTCGTGATCAGATTTTGTT 2428 ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2322 CTGCCTATCATATAAGAAGCAACCGAGGACATAGCTCCCGACTCG--ATCAGATTTTGTT 2379 Query 2429 CGGGGTTTTCAGATGGAAGATAGtttttcattctcttttcttttctttattctctttggt 2488 ||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||| Sbjct 2380 CGGGGTTC-CAGATGGAAGATAGTTTT-CGTTCTCTTTTCTTTTCTTTATTTTCTTTGGC 2437 Query 2489 ttttttttttttCTTTTGGTTACTTCGGCGCTGGCTAGAAGGTGGAAAGGCTTTAGTTGC 2548 ||||||||||| ||||||||||||| || ||||| ||||||||| |||||||||||||| Sbjct 2438 TTTTTTTTTTTAATTTTGGTTACTTCAGCTCTGGCAAGAAGGTGGGAAGGCTTTAGTTGC 2497 Query 2549 AGTAAGAGTATTGTTCTGCTTCTTCTTCAGAGGTGCAACAAAATGAAAAATG--GCTGAC 2606 ||||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||| Sbjct 2498 AGTAAGAGTGTTGTTCTGCTTCTTCTTCAGAGTTGCTACAAAATGAAAAAAAAAGCTGAC 2557 Query 2607 TATTTTGTACATCTTTGGTCTGAAGATAAGTGGGCTTTGTCTATGGCATCTTCTTTTAGG 2666 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 2558 TATTTTGTACATCTTTGGTCTGAAGATAAGAGGGCTTTGTCTTTGGCATCTTCTTTTAGG 2617 Query 2667 TTTTCTAATGTTTGATGATCATT-CAT----GGTGAGGGAAAGAGAAAATTGCCGATGGG 2721 ||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||||| Sbjct 2618 TTTTCTAATGTTTGATGATCATTTCATTCATGGTCAGGGAAAGAGAAAAATGCCGATGGG 2677 Query 2722 GGTTAAGTAGAAAAGTTAAAGAATTCGttttcttacctttttatgaaattcatcttttag 2781 |||| || |||||| ||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 2678 GGTTTAGCAGAAAATTTAAAGAATTCGTTTTCTTACCTTTTTATGAAATTTATCCTTTAG 2737 Query 2782 gcttatatattttatattatttattcatt 2810 |||| |||||||||||| ||||||| ||| Sbjct 2738 GCTTTTATATTTTATATAATTTATTTATT 2766 > Ahg913497 jgi|Araly1|913497|Al_scaffold_0001_3751 Length=1749 Score = 649 bits (351), Expect = 0.0 Identities = 1083/1415 (77%), Gaps = 136/1415 (10%) Strand=Plus/Plus Query 826 TAATAGCAAGAATAGGAA-TGCTAGGAGCAGAAGTGATGCTGATTCAGTTGGGTCTCCTT 884 |||||||| ||||||||| | ||||||||| |||||| | ||||||| || ||||||| Sbjct 129 TAATAGCAGGAATAGGAACT-CTAGGAGCAAAAGTGACGTTGATTCAATTCATTCTCCTT 187 Query 885 TTCTCGACCGGTCTTCTTCCACCAATACGAGGAGGGGATCTAGTAATGGGTCTACAAAAC 944 |||| || || |||||||| || ||| | |||||||| |||||||||| ||| |||| | Sbjct 188 TTCTGGATCGATCTTCTTCTACTAATTCAAGGAGGGGCGCTAGTAATGGTTCTGCAAAGC 247 Query 945 ATGCATATAGTAGTTTCAACTTTAATAGGAG-CAACAGAGATAAAGATCGGAGCAGGGAG 1003 ||||||||||||||||||||||||||||||| ||| || ||||| || || |||||||| Sbjct 248 ATGCATATAGTAGTTTCAACTTTAATAGGAGTCAA-AGGGATAAGGACCGCAGCAGGGAC 306 Query 1004 AAGGATAGGATGAGCTACATGGATCCATGGGACAATGATAGTTCTATGCCTTTTGGAACC 1063 ||||||||| | ||||| |||||||||||||| ||| | ||||| ||| || |||| Sbjct 307 AAGGATAGGGTAAGCTATGTGGATCCATGGGACCTTGACACCTCTATCCCTCTTAGAAC- 365 Query 1064 T-TCTTGATTGGTAGGGGAGA-GGAGCCACTGAGACGATCACATTCAATGACAACAAGGA 1121 | |||||| |||||||| | ||| ||| |||||||||||||||||||| |||||||| Sbjct 366 TATCTTGACTGGTAGGG-ATCCGGATCCATTGAGACGATCACATTCAATGGTAACAAGGA 424 Query 1122 AACAGGGAAACCATCTGGCTCAAGGATTTACAGTAGGATAT-AAAAATGGTGGAAACAT- 1179 |||||||| |||| ||| ||| |||||| ||||| || | | ||||||||||| | | | Sbjct 425 AACAGGGAGACCACCTGTCTCGAGGATTAACAGTGGGCT-TGAAAAATGGTGGCA-C-TG 481 Query 1180 -TAATACTTTCAACGGACATGGTA-TACT-TCCTGGAACTAGCCCTGTAAAGAGCTC-CA 1235 ||||| || ||| ||| | || | |||| || |||| ||||| || || |||| || Sbjct 482 GTAATAGTTACAATGGAAACGG-AGTACTCTC-TGGACCTAGCATTGGGAATAGCTTTCA 539 Query 1236 AAAGAA-TGGGTTTCAATAAGGATTTTCCTT-TGCTTAGAGGTGAAGAGA-G-AAA-TGG 1290 | ||| ||||||| | |||||||||||||| | ||| ||| |||||||| | ||| ||| Sbjct 540 GA-GAACTGGGTTTGA-TAAGGATTTTCCTTCT-CTTGGAGCTGAAGAGAAGCAAAATGG 596 Query 1291 AGGCCCAGACGTTGTAAGAATCTCATCTCCTGGTCGAAGTCCTA-CTGCTCAGAGCTTGT 1349 | | ||| |||||| || |||||||||||| | |||| | | ||| ||||| ||| Sbjct 597 -G-CA-AGATGTTGTACGAGTCTCATCTCCTGTTATAAGTTC-AGCTGTTCAGAACTTAC 652 Query 1350 CAGTTGCTAA-TCCAGCCTTGATTA-TCGGGGAAGGTTGGACATCGGCTCTGGCAGAGGT 1407 |||||| ||| || ||| |||||| | ||||||||||||||||| |||||||||||||| Sbjct 653 CAGTTGGTAACTC-AGCTTTGATTGGT-GGGGAAGGTTGGACATCTGCTCTGGCAGAGGT 710 Query 1408 TCCCAATGTTATTGAGAAGAG-TGGT---GG-TGC-TGAA--TCCC-AT-G-CTAATG-T 1455 ||||||||| || |||||| | | || || | | | || |||| | | |||||| | Sbjct 711 TCCCAATGTCATCGAGAAG-GCTTGTACTGGGT-CATTAACGTCCCCAAAGGCTAATGCT 768 Query 1456 GGGTAATTCGGCTACCTTATCTGGACCAGCTTGTCGTAACATGGCTGAAGCATTGGTGCA 1515 | || ||| || ||| ||||| || || ||| ||||||||| ||||||||||| || Sbjct 769 GT-TAGCACGGGAACTTTAACTGGAACAACTGGTCTTAACATGGCAGAAGCATTGGTTCA 827 Query 1516 GGCTCCAGGAAGAACTGGTACACCACCCCA-GG--C----A---CA-AAC-ACTTGAGGA 1563 |||||||| ||||| | || || ||||| || | | || ||| ||| ||||| Sbjct 828 GGCTCCAGCAAGAAGTCACACCCCTCCCCAAGGATCGGTGAAGACACAACGACTCGAGGA 887 Query 1564 CC-GAGCTATTAGGCAATCTAGGCAGTTGATACCGGTTGTGCCTTCAGCACCAAAGGGCT 1622 | | || || | ||| || ||||| |||||||||||||||||||||||||||||| ||| Sbjct 888 CTTG-GCAATCAAGCAGTCAAGGCAATTGATACCGGTTGTGCCTTCAGCACCAAAGTGCT 946 Query 1623 C-AGTTCAT-AACTCTTCTGATAAATCCAAGACCAAACCAA-TGTTTCGAAGTGGTGAAA 1679 | ||| | | || |||||||||||||||||||| || | || || |||||| |||||||| Sbjct 947 CGAGT-C-TGAATTCTTCTGATAAATCCAAGACTAAGC-AAGTGGTTCGAACTGGTGAAA 1003 Query 1680 CCGGTCTTGCTTCTTCAAGAAATACCCAACAGCAGTCCTCTGTGATGCTCGGTAATATGC 1739 | |||||||| | ||||||||| ||||||| ||| ||||||| | || || ||| | | Sbjct 1004 CTTGTCTTGCTCCCTCAAGAAATGCCCAACAACAGCCCTCTGTCCTACTTGGGAATTTCC 1063 Query 1740 AGTCTAATCCTGGTAGTCAGATCAAGCCTGATACGACTAAGAAGCTGGTGATTCTCAAAC 1799 ||||||||||| || |||| ||||| ||||| || | ||||||| || ||||||||| Sbjct 1064 AGTCTAATCCTAGTGGTCAAATCAAACCTGA---GA--A-GAAGCTGTTGGTTCTCAAAC 1117 Query 1800 CTGCTAGGGAAAATGGGGT-AGTTGCTGG-AG-GT-TC---A--CC--ACC-C-AA--CA 1844 | |||||||||||||| || ||| |||| | | || | || | | || || Sbjct 1118 CGGCTAGGGAAAATGGTGTCAGT-GCTGTTAAAGAATCTGGAAGCCCTAGTGCTAATACA 1176 Query 1845 G-C-C--GAGTTGCCGCTAGCCAGCCGA---CCACTGCCCCATCCACACAATTTACTGCT 1897 | | ||| ||| ||||||||| || ||| ||| | ||| || |||| ||||| Sbjct 1177 AACACTCGAGCCGCCTCTAGCCAGCTGATGTCCAATGCTCAATCAACGCAAT---CTGCT 1233 Query 1898 TCTGTGAGAAGCACAAATGGTCCAAGGGATCTCAGGGGAGCTTCTG--TAAAC-ATGTTA 1954 |||||||||| ||||| | |||| ||| |||| ||||||| || | | ||| || Sbjct 1234 CCTGTGAGAAGTACAAACAGCCCAAAGGAGCTCAAGGGAGCTAGTGCCTTCTCCATGATA 1293 Query 1955 GCTGGA-AAAGCCG-CTGAAAAGAAA-CTTTC-CTTGGCTCAAACTCAGAGCAGGCA-TG 2009 |||| ||| | | | ||||||||| ||| | || | ||||||||||||||||| | || Sbjct 1294 TCTGGCCAAA-CTGTC-GAAAAGAAATCTTCCACT-G-CTCAAACTCAGAGCAGG-AGTG 1348 Query 2010 CATTTTACAGTGCTTTGAAGCA-AAAAACA-TGTA-CGA-A--CATCTCAACTGATCCA- 2062 |||||||||||||| ||||||| ||||| | || | | | | |||||| || ||||| Sbjct 1349 CATTTTACAGTGCTCTGAAGCAGAAAAAAACTGCATCAACAAGCATCTCCACCGATCCCG 1408 Query 2063 TCAAA-----AACCAGCTCTTGCATCTTGTCTTCAGTGGAGG-AACAGGCAAACAGTTCT 2116 | || |||||| | | | |||| |||| || |||| || || ||| ||| ||| Sbjct 1409 TTAACTCTTCAACCAG-TGT--C-TCTT--CTTCTGTTGAGGGAAAAGTCAA-CAGCTCT 1461 Query 2117 AAGGAGCTTGTAGCTAGTGACCCTTCAAGTCCACA 2151 ||||| ||| ||||||||||||||||||||||||| Sbjct 1462 AAGGATCTTATAGCTAGTGACCCTTCAAGTCCACA 1496 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 106424144530 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5