BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G08570.1

Length=1091
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg894990 jgi|Araly1|894990|Al_scaffold_0006_2986                    715    0.0  


> Ahg894990 jgi|Araly1|894990|Al_scaffold_0006_2986
Length=453

 Score =  715 bits (387),  Expect = 0.0
 Identities = 431/453 (95%), Gaps = 0/453 (0%)
 Strand=Plus/Plus

Query  96   ATGGGAGTGGAAGGAACGATGGAGTATATATCAGACCTTTTAaagaagaggaagaggaag  155
            ||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||
Sbjct  1    ATGGGAGTGGAAGGAACTATGGAGTATATATCGGACTTTTTGAAGAAGAGGAAGAGGAAG  60

Query  156  aagaagaagCAAATGCAAACAGTAGCTCTCCGTGTTGCTCGTATCGACTGCGAAGGCTGT  215
            |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct  61   AAGAAGAAGCAACTGCAAACAGTAGCTCTCCGAGTTGCTCGTATCGACTGCGAAGGTTGT  120

Query  216  GAACGTAAGATCAAACATGTCCTCTCCGGTGTCAAAGGGGTGAAGTCAGTGGACGTGGAC  275
            |||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||
Sbjct  121  GAACGTAAGATCAAACATATCCTCTCCGGTGTCAAAGAGGTGAAGTCAGTGGACGTAGAC  180

Query  276  GTAAAGCTGCAGAAGGTAACGGTAACGGGATATATAGACCCAAAGAAGGTTTTGGAGGCT  335
            || |||||||| |||||||||||||||||||||||||| || ||||||||||||||||| 
Sbjct  181  GTGAAGCTGCAAAAGGTAACGGTAACGGGATATATAGAGCCGAAGAAGGTTTTGGAGGCG  240

Query  336  GCCAAGTCAACGAAGAAGAAAGTGGAGTTATGGCCGTACGTTCCTTACACAATGGTGGCG  395
            |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct  241  GCCAAGTCAACGAAGAAGAAAGTGGAGTTATGGCCGTATGTTCCTTACACGATGGTGGCG  300

Query  396  AATCCGTACATATCTCAGGCGTATGACAAGAAGGCACCACCAAACATGGTTCGGAAAGTC  455
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  AATCCGTACATATCTCAGGCGTATGACAAGAAGGCACCACCAAACATGGTTCGGAAAGTC  360

Query  456  CCCGACACGGCCTCTGTCAACGAGACCACCGTCGATGACTCTTACACTATTATGTTTAGC  515
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  361  CCCGACACGGCCTCTGTCAACGAGACCACCGTCGATGACTCTTACACCATTATGTTTAGC  420

Query  516  GACGAGAACCCTAATTCTTGCGCTATCATGTAG  548
            || ||||| ||||||||||||  ||||||||||
Sbjct  421  GATGAGAATCCTAATTCTTGCATTATCATGTAG  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40639029522


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5