BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G08700.1 Length=1403 Score E Sequences producing significant alignments: (Bits) Value Ahg489770 jgi|Araly1|489770|fgenesh2_kg.6__2904__AT4G08700.1 1533 0.0 Ahg351979 jgi|Araly1|351979|fgenesh1_pg.C_scaffold_6002572 658 0.0 Ahg942659 jgi|Araly1|942659|scaffold_603203.1 654 0.0 > Ahg489770 jgi|Araly1|489770|fgenesh2_kg.6__2904__AT4G08700.1 Length=1114 Score = 1533 bits (830), Expect = 0.0 Identities = 994/1071 (93%), Gaps = 20/1071 (2%) Strand=Plus/Plus Query 271 TTGGTGGATTCTTGTCTTTATAAGTATCTTCTTCCTCATCTCTGCACAAGCCATTGCTGT 330 |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| Sbjct 60 TTGGTGGATTCTTGTCTTCATAAGCATCTTCTTCCTCATCTCTGCTCAAGCCATTGCTGT 119 Query 331 TCTTCTTGGTCGGTTTTATTACAACGAAGGTGGAAACAGTAAATGGATCTCTACTCTTGT 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TCTTCTTGGTCGGTTTTATTACAACGAAGGTGGAAACAGTAAATGGATCTCTACTCTTGT 179 Query 391 CCAAACTTGTGGTTTTCCGAttctctatctccctctttgtttccttcctgcttcacactc 450 |||||| |||| ||||||||||| ||||| ||||||||| |||||||||||||||| || Sbjct 180 CCAAACGGGTGGCTTTCCGATTCTTTATCTTCCTCTTTGTCTCCTTCCTGCTTCACAATC 239 Query 451 ttcttcatcttcttgttctttcAAGACTCTGGTTTGGATTTATCTTTCTCTTGGTTTTGC 510 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 240 TTCTTCATCTTCTTGTTCTTTCAAGACTCTGGTTTGGATTTATCTTTCGCTTGGTTTTGC 299 Query 511 TATTGGTTTAGACAATCTTTTATACTCTTTTGGTCTTTTGTATCTCTCTGCTTCAACTTA 570 |||||||||||||||||||||||||||| |||| |||||||||| ||||||||| ||||| Sbjct 300 TATTGGTTTAGACAATCTTTTATACTCTATTGGGCTTTTGTATCACTCTGCTTCGACTTA 359 Query 571 TTCGATTCTTTGTTCTTCACAGTTAGCTTTCAATGGTGTCTTCTCTTATTACATCAATTC 630 ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TTCGATTCTATGTGCTTCACAGTTAGCTTTCAATGGTGTCTTCTCTTATTACATCAATTC 419 Query 631 TCAGAAAATCACttgtttgattctcttctctgtgttgtttctctctgtctctgctgtgtt 690 |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 420 TCAGAAAATCACTTGTTTGATTCTCTTCTCAGTGTTGTTTCTCTCTATCTCTGCTGTGTT 479 Query 691 ggtttctctTGACGATGATTCCAATAGCCCATCAGGAGATTCTAAGTGGAGTTACTTGAT 750 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GGTTTCTCTTGACGATGATTCCAATAGCCCATCAGGAGATTCTAAGTGGAGTTACTTGAT 539 Query 751 TGGTTGTTTATGTACTGTTTTTGCTTCTCTTATCTATTCTCTTCAGCTCTCTCTTATGCA 810 ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 540 TGGTTGTTTCTGTACAGTTTTGGCTTCTCTTATCTATTCTCTTCAGCTCTCTCTTATGCA 599 Query 811 GTTTTCTTTCGAGAATGTTCTCAAGAGTGAGACGTTCTCTATGGTTCTCGAGATGCAAAT 870 |||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| || Sbjct 600 GTTTTCGTTCGAGAATGTTCTCAAGAGTGAGACTTTCGCTATGGTTCTCGAGATGCAGAT 659 Query 871 CTATACGTCGCTTGTGGCTTCTTGTGTTGCGGTTATCGGGTTGTTTGCGAGCGGGGAATG 930 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 CTATACGTCACTTGTGGCTTCTTGTGTTGCGGTTATCGGGTTGTTTGCGAGCGGGGAATG 719 Query 931 GATGTTGTTGAGTGTGGAGATGGAAGAGTTTCACGA-GGGTCAAGTCATTTATGTTTTGA 989 || |||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 720 GAAGTTGTTGAGTGTGGAGATGGAAGAGTTTCA-GAAGGGTCAAGTCATTTATGTTTTGA 778 Query 990 CTTTGGTTGGGACCGCGGTTTCGTGGCAATTGGGTTCTGTAGGAGCCGTGGCGCTTATAT 1049 ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 779 CTTTGGTTGGGACAGCGGTTTCGTGGCAATTGGGTTCTTTAGGAGCCGTGGCGCTTATAT 838 Query 1050 TTCTGGTTTCTTCGCTGTTTTCGAACCTTATTGGTACACTCTCACTCATTGTTACGCCTC 1109 ||||||| || |||||||| ||||||||||||||||| |||||||||||||| ||||||| Sbjct 839 TTCTGGTGTCGTCGCTGTTCTCGAACCTTATTGGTACGCTCTCACTCATTGTAACGCCTC 898 Query 1110 TTGCAGCCATTGCGGTGTTCCACGACAAGCTGACTGAGGTTAAGATGGTCGCGATGCTCA 1169 |||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 899 TTGCTGCCATTGCCGTGTTCCACGACAAGCTGACTGAAGTTAAGATGGTCGCAATGCTCA 958 Query 1170 TTGCCTTCATGGGGTTCGGGTTTTATATCTACCAGAATTATCTTGATGACCTGAAAGTAC 1229 | || |||| ||| |||| ||||||||||||||||||||||||||||||| |||| |||| Sbjct 959 TCGCGTTCACGGGATTCGCGTTTTATATCTACCAGAATTATCTTGATGACTTGAACGTAC 1018 Query 1230 AAAGAGCACGAGAAGCTCAGGCTGAA-TAGTTCTGCTGTGTTTTATTAGTTAATTTTGTT 1288 ||||||||||| || | ||||| ||| || || | | ||| | ||| |||| | Sbjct 1019 AAAGAGCACGAAAAACCCAGGCCGAACTA-TT-T--TA-GTT--A---GTTG-TTTTAT- 1066 Query 1289 AGTAACCT-TTCTTAGAACAAGCTAGCTACAAGTGTTGTATTGTATATAGT 1338 | ||| | || | |||||||| ||||||||| ||||||||| |||||||| Sbjct 1067 A--AAC-TATTGT-AGAACAAGGTAGCTACAAATGTTGTATTCTATATAGT 1113 > Ahg351979 jgi|Araly1|351979|fgenesh1_pg.C_scaffold_6002572 Length=753 Score = 658 bits (356), Expect = 0.0 Identities = 417/447 (93%), Gaps = 2/447 (0%) Strand=Plus/Plus Query 811 GTTTTCTTTCGAGAATG-TTCTCAAGAGTGAGACGTTCTCTATGGTTCTCGAGATGCAAA 869 |||||| |||||||| | ||||||||||||||| ||| |||| |||||||||||||| | Sbjct 306 GTTTTCATTCGAGAA-GATTCTCAAGAGTGAGATTTTCGCTATAGTTCTCGAGATGCAGA 364 Query 870 TCTATACGTCGCTTGTGGCTTCTTGTGTTGCGGTTATCGGGTTGTTTGCGAGCGGGGAAT 929 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 365 TCTATACGTCGCTTGTGGCTTCTTGTGTTGCGGTTATCGGGTTGTTTGCAAGCGGGGAAT 424 Query 930 GGATGTTGTTGAGTGTGGAGATGGAAGAGTTTCACGAGGGTCAAGTCATTTATGTTTTGA 989 || |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 425 GGCTGTTGTTGAGTGAGGAGATGGAAGAGTTTCAGGAGGGTCAAGTCATTTATGTTTTGA 484 Query 990 CTTTGGTTGGGACCGCGGTTTCGTGGCAATTGGGTTCTGTAGGAGCCGTGGCGCTTATAT 1049 ||||||||||||| ||||| ||||| |||||||||||||||||| ||||||||||||||| Sbjct 485 CTTTGGTTGGGACAGCGGTGTCGTGTCAATTGGGTTCTGTAGGATCCGTGGCGCTTATAT 544 Query 1050 TTCTGGTTTCTTCGCTGTTTTCGAACCTTATTGGTACACTCTCACTCATTGTTACGCCTC 1109 ||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 545 TTCTGGTGTCGTCGCTGTTCTCGAACCTTATTGGTACACTCTCACTCATTGTAACGCCTC 604 Query 1110 TTGCAGCCATTGCGGTGTTCCACGACAAGCTGACTGAGGTTAAGATGGTCGCGATGCTCA 1169 |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 605 TTGCTGCCATTGCCGTGTTCCACGACAAGCTGACTGAGGTTAAGATTGTCGCGATGCTCA 664 Query 1170 TTGCCTTCATGGGGTTCGGGTTTTATATCTACCAGAATTATCTTGATGACCTGAAAGTAC 1229 ||||||||| || |||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 665 TTGCCTTCACAGGATTCGCGTTTTATATCTACCAGAATTATCTTGATGACTTGAAAGTAC 724 Query 1230 AAAGAGCACGAGAAGCTCAGGCTGAAT 1256 ||||||||||||||||||| || |||| Sbjct 725 AAAGAGCACGAGAAGCTCAAGCCGAAT 751 Score = 409 bits (221), Expect = 3e-113 Identities = 263/283 (93%), Gaps = 3/283 (1%) Strand=Plus/Plus Query 191 ATGTTACTGCTAAAGGAAGAAGATGAAGGAACAAGAAGAACTAGTGTTCCTACACAACTC 250 ||||| |||||||||||||||||||| |||| | |||||||||||||||||||||||||| Sbjct 1 ATGTTGCTGCTAAAGGAAGAAGATGAGGGAAGAGGAAGAACTAGTGTTCCTACACAACTC 60 Query 251 ATGAAACTAAAACGAACCCATTGGTGGATTCTTGTCTTTATAAGTATCTTCTTCCTCATC 310 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 ATGAAACTAAAACGAACCCATTGGTGGATTCTTGTCTTCATAAGTATCTTCTTCCTCATC 120 Query 311 TCTGCACAAGCCATTGCTGTTCTTCTTGGTCGGTTTTATTACAACGAAGGTGGAAACAGT 370 ||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 121 TCTGCTCAAGCCATTGGTGTTCTGCTTGGTCGGTTTTATTACAACGAAGGTGGAAACAGT 180 Query 371 AAATGGATCTCTACTCTTGTCCAAACTTGTGGTTTTCCGAttctctatctccctctttgt 430 ||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct 181 AAATGGATCTCCACTCTTGTCCAAACCTGTGGCTTTCCGATTCTTTATCTCCCTCTTTGT 240 Query 431 ttccttcctgcttcaca--ct-cttcttcatcttcttgttctt 470 |||||||| ||||| | || ||||||||| ||||| ||||| Sbjct 241 ATCCTTCCTTCTTCAAAATCTTCTTCTTCATTTTCTTCTTCTT 283 > Ahg942659 jgi|Araly1|942659|scaffold_603203.1 Length=616 Score = 654 bits (354), Expect = 0.0 Identities = 424/458 (93%), Gaps = 4/458 (1%) Strand=Plus/Plus Query 801 CTCTTATGCAGTTTTCTTTCGAGAATG-TTCTCAAGAGTGAGACGTTCTCTATGGTTCTC 859 |||||||||||||||| |||||||| | ||||||||||||||| ||| |||| |||||| Sbjct 148 CTCTTATGCAGTTTTCATTCGAGAA-GATTCTCAAGAGTGAGATTTTCGCTATAGTTCTC 206 Query 860 GAGATGCAAATCTATACGTCGCTTGTGGCTTCTTGTGTTGCGGTTATCGGGTTGTTTGCG 919 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 207 GAGATGCAAATCTATACGTCGCTTGTGGCTACTTGTGTTGCGGTTATCGGGTTGTTTGCG 266 Query 920 AGCGGGGAATGGATGTTGTTGAGTGTGGAGATGGAAGAGTTTCACGAGGGTC-AAGTCAT 978 |||||||| ||| ||||||||||| |||||||||||||||||| ||||||| ||| ||| Sbjct 267 AGCGGGGATTGGCTGTTGTTGAGTAAGGAGATGGAAGAGTTTCAGGAGGGTCAAAG-CAT 325 Query 979 TTATGTTTTGACTTTGGTTGGGACCGCGGTTTCGTGGCAATTGGGTTCTGTAGGAGCCGT 1038 ||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| || | Sbjct 326 TTATGTTTTGAATTTGGTTGGGACAGCGGTTTCGTGGCAACTGGGTTCTGTAGGATCCAT 385 Query 1039 GGCGCTTATATTTCTGGTTTCTTCGCTGTTTTCGAACCTTATTGGTACACTCTCACTCAT 1098 |||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| Sbjct 386 GGCGCTTATATTTCTGGTGTCTTCGCTGTTTTCAAACTTTATTGGTACACTCTCACTCAT 445 Query 1099 TGTTACGCCTCTTGCAGCCATTGCGGTGTTCCACGACAAGCTGACTGAGGTTAAGATGGT 1158 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 446 TGTTACGCCTCTTGCAGCCATTGCCGTGTTGCACGACAAGCTGACTGAGGTTAAGATGGT 505 Query 1159 CGCGATGCTCATTGCCTTCATGGGGTTCGGGTTTTATATCTACCAGAATTATCTTGATGA 1218 ||| |||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| Sbjct 506 CGCAATGCTCATTGCCTTCATGGGATTCTCGTTTTATATCTACCAGACCTATCTTGATGA 565 Query 1219 CCTGAAAGTACAAAGAGCACGAGAAGCTCAGGCTGAAT 1256 | |||||||||||||||||||||||||| |||| |||| Sbjct 566 CTTGAAAGTACAAAGAGCACGAGAAGCTTAGGCCGAAT 603 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52450267365 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5