BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08850.1
Length=3482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489780 jgi|Araly1|489780|fgenesh2_kg.6__2914__AT4G08850.1 4975 0.0
> Ahg489780 jgi|Araly1|489780|fgenesh2_kg.6__2914__AT4G08850.1
Length=3277
Score = 4975 bits (2694), Expect = 0.0
Identities = 3118/3317 (94%), Gaps = 51/3317 (2%)
Strand=Plus/Plus
Query 1 AATAATTAAAGAGAGAATTCAAGATATTGACTTATTTGTCCTCTATTAACAAGTGACAAC 60
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 AATAATTAAAGAAAGAATTCAAGATATTGACTTATTTGTCATCTATTAACAAGTGACAAC 60
Query 61 CCATAGTCAACTATCACGGACTAGTCAACGAAATCAATTTT-CAGTTTATAAAAGACCGT 119
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 61 CCATAGTCAACTATCACGGACTAGTCAACGAAATCAATTTTCCAGTTTATAAAAGACGGT 120
Query 120 AGAGAGATAATCTGCAACTGTATGAACAAAACAAACCCAG-AAA-GAAAAA-TA-TCACT 175
|||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||
Sbjct 121 --AGAGATAATCTGCAACTGTATGAACAAAACAAACCCAGCAAACAAAAAACAATTCACT 178
Query 176 AACCTCATTCAAAGAGAGAATGGCTTGTAAAGAAAAGCCTCGTGATCTTCAAGTTCTTTT 235
|| | | || ||| | || || | | |||||||||||||||||||||
Sbjct 179 AA-C-C--TC--AGA-A-AA-----TG----G---A---TCGTGATCTTCAAGTTCTTTT 215
Query 236 GATCATATCTATAGTTTTGAGTTGTTCTTTTGCTGTTTCTGCAACGGTGGAAGAAGCTAA 295
||||||||||||||||||||| |||||| |||||||||| ||||| || |||||||||||
Sbjct 216 GATCATATCTATAGTTTTGAGCTGTTCTCTTGCTGTTTCCGCAACCGTTGAAGAAGCTAA 275
Query 296 TGCTCTTTTGAAATGGAAGTCAACTTTCACAAACCAGACAAGTTCATCAAAGCTATCTTC 355
||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 276 TGCTCTTTTGAAATGGAAGTCGACTTTCACAAACCAGACAAGTTCTTCAAAGCTTTCTTC 335
Query 356 TTGGGTCAATCCAAACACAAGCAGCTTTTGTACCAGTTGGTATGGTGTTGCCTGCTCACT 415
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||
Sbjct 336 TTGGGTCAATCCAAACACAAGCAGCTTCTGTACCAGTTGGTATGGTGTTTCCTGCTTACG 395
Query 416 CGGGAGCATTATACGGTTGAATCTTACTAATACCGGTATCGAAGGTACTTTCGAAGATTT 475
|||||||||| |||||||||||||||| |||||||||||| ||||||||||||| |||||
Sbjct 396 CGGGAGCATTGTACGGTTGAATCTTACGAATACCGGTATCAAAGGTACTTTCGAGGATTT 455
Query 476 TCCATTCTCGTCTCTCCCCAATCTCACTTTTGTTGATCTCAGTATGAACCGTTTCTCTGG 535
||||||||||||||| ||||||||||||| ||||||||| || ||||||| |||||||||
Sbjct 456 TCCATTCTCGTCTCTACCCAATCTCACTTATGTTGATCTAAGCATGAACCTTTTCTCTGG 515
Query 536 AACCATCTCTCCTTTATGGGGACGGTTCTCGAAACTCGAATACTTCGATTTGTCGATTAA 595
||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 516 AACGATCTCTCCTCTATGGGGACGGTTCTCGAAACTCGTGTACTTCGATTTGTCGATTAA 575
Query 596 CCAGTTAGTTGGTGAAATCCCACCTGAACTTGGTGATTTGAGTAATTTAGATACTCTCCA 655
|||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct 576 TCAGTTAGTTGGTGAAATCCCACCTGAGCTTGGTGATTTGAGTAACTTAGGTACTCTCCA 635
Query 656 TCTAGTTGAAAACAAGTTAAACGGATCGATTCCTTCTGAGATCGGTCGGTTAACTAAGGT 715
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 636 TCTTGTTGAAAACAAGTTAAACGGATCGATTCCTTCTGAAATCGGTCGGTTAACTAAGGT 695
Query 716 TACGGAGATAGCTATATACGACAATCTTTTAACCGGACCAATACCTTCTTCTTTTGGAAA 775
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 TACGGAGATAGCTATGTACGACAATCTTTTAACCGGACCAATACCTTCTTCTTTTGGAAA 755
Query 776 CCTTACCAAACTAGTTAACCTCTACCTCTTTATCAATTCTCTTTCTGGTTCAATTCCTTC 835
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 756 CCTTACCAAACTTGTTAATCTCTACCTCTTTATCAATTCTCTTTCTGGTTCAATTCCTTC 815
Query 836 TGAAATAGGAAACTTACCCAACCTTAGAGAGCTATGTCTAGATAGGAACAACCTTACCGG 895
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 816 TGAAATAGGAAACCTACCCAACCTTAAAGAGCTATGTCTAGATAGGAACAACCTTACCGG 875
Query 896 TAAAATCCCTTCTAGTTTCGGGAATTTGAAGAATGTAACTCTTCTCAATATGTTTGAAAA 955
|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 876 TAAAATCCCTTCCAGTTTTGGAAATTTGAAGAATGTAACTCTTCTCAATATGTTTGAAAA 935
Query 956 TCAGCTCTCTGGTGAAATCCCTCCTGAGATTGGTAATATGACCGCTTTAGATACACTTAG 1015
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 936 TCAGCTCTCTGGTGAAATCCCTCCTGAGATTGGTAATATGACCGCTTTAGATACTCTTAG 995
Query 1016 TCTCCACACAAATAAGCTTACCGGTCCAATACCTTCTACCTTAGGAAACATCAAAACCCT 1075
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 996 CCTCCACACAAATAAGCTTACCGGTTCAATACCTTCTACCTTAGGAAACATCAAAACCCT 1055
Query 1076 AGCCGTTCTTCATCTTTACCTGAATCAACTCAATGGTTCGATTCCACCGGAACTAGGCGA 1135
|||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
Sbjct 1056 AGCCATTCTTCATCTTTACCTGAATCAGCTCAGTGGTTCGATTCCACCGGAACTAGGC-A 1114
Query 1136 A-ATGGAATCAATGATTGATTTGGAGATAAGTGAGAACAAACTCACCGGTCCTGTTCCCG 1194
| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1115 ACATGGAAGCAATGATTGATTTGGAGATAAGTGAGAACAAACTCACTGGTCCTGTTCCTG 1174
Query 1195 ATTCTTTTGGCAAGTTAACCGCGTTGGAATGGTTGTTCCTACGTGATAATCAGCTCTCTG 1254
||||||||||||||||||||| |||| ||||||| ||||| |||||||| ||||| ||||
Sbjct 1175 ATTCTTTTGGCAAGTTAACCGTGTTGCAATGGTTATTCCTCCGTGATAACCAGCTTTCTG 1234
Query 1255 GTCCCATCCCACCGGGAATTGCTAACTCTACAGAGCTCACCGTCCTGCAGCTCGACACCA 1314
|||||||||||||||| |||||||||||||||||||||| ||||||||| || |||||||
Sbjct 1235 GTCCCATCCCACCGGGCATTGCTAACTCTACAGAGCTCAGCGTCCTGCAACTAGACACCA 1294
Query 1315 ACAACTTCACCGGTTTCTTGCCTGATACCATCTGTAGAGGTGGAAAGCTTGAGAATCTTA 1374
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1295 ACAACTTCACTGGTTTCTTGCCTGATACTATCTGTAGAGGTGGCAAGCTTGAGAATCTTA 1354
Query 1375 CGCTAGATGATAATCACTTCGAAGGTCCTGTTCCTAAAAGCTTGAGAGATTGCAAGAGCT 1434
|||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||
Sbjct 1355 CGCTAGATGATAATCACTTCGAGGGTCCTATTCCTAAAAGCTTGAGAAATTGCAAGAGCT 1414
Query 1435 TGATCAGAGTAAGATTCAAAGGGAAT-AGTTTCTCCGGAGATATCTCTGAGGCTTTCGGA 1493
|| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1415 TGGTCAGAGTAAGATTCAAAGGGAACCA-TTTCTCCGGAGATATCTCTGAGGCTTTCGGA 1473
Query 1494 GTTTACCCGACTCTCAACTTCATCGATCTCAGCAACAACAACTTTCATGGACAACTTTCA 1553
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1474 GTTTACCCGACTCTCAACTTCATTGATCTCAGCAACAACAACTTTCATGGGCAACTTTCA 1533
Query 1554 GCCAACTGGGAACAAAGT-CAAAAGCTGGTTGCATTCATCCTCTCAAACAACAGCATCAC 1612
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1534 GCCAACTGGGAACAAAGTACAAA-GCTGGTTGCATTCATCCTCTCAAACAACAGCATCAG 1592
Query 1613 TGGAGCCATCCCACCTGAGATTTGGAACATGACACAGCTAAGTCAGCTCGATCTATCTTC 1672
||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 1593 TGGAGCCATCCCACCTGAGATTTGGAACATGGCACAGCTCAGTCAACTCGATCTATCTTT 1652
Query 1673 CAACCGCATCACCGGCGAGCTACCTGAATCAATCAGCAATATCAACCGTATATCAAAACT 1732
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1653 CAACCGTATCACCGGCGAGCTACCTGAATCAATCAGCAATATCAACCGTACATCAAAACT 1712
Query 1733 CCAACTCAACGGGAATCGGCTATCAGGCAAAATCCCTTCAGGAATCAGACTCTTAACCAA 1792
||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1713 CCAACTCAACGGGAATCAGCTATCTGGCAAAATCCCTTCAGGAATCAGTCTCTTAACCAA 1772
Query 1793 TCTTGAGTATCTTGATCTATCCTCAAACCGATTCAG-TTCCGAAATACCCC-CAACGCTC 1850
|||||||||||||||||||||||||||||||||| | ||| || || ||| |||| |||
Sbjct 1773 TCTTGAGTATCTTGATCTATCCTCAAACCGATTCGGGTTC-GAGAT-CCCTGCAACTCTC 1830
Query 1851 AACAATTTGCCAAGGCTCTACTACATGAACCTGAGCAGAAACGACTTGGATCAAACCATC 1910
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1831 AACAATTTTCCAAGGCTCTATTACATGAACCTGAGCAGAAACGACTTGGATCAAACCATC 1890
Query 1911 CCGGAGGGGTTAACAAAGCTATCTCAGTTACAAATGCTTGATCTCAGCTACAATCAGCTC 1970
|| ||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1891 CCCGAGGGATTAACGAAGCTGTCTCAGTTACAAATGCTGGATCTCAGCTACAATCAGCTC 1950
Query 1971 GACGGAGAGATCTCATCACAATTCAGATCTTTACAAAACCTCGAAAGACTCGACCTCTCA 2030
|||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 1951 GACGGAGAGATCTCATCACAGTTCGGCTCTTTACAAAACCTCGAAAGACTCGACCTCTCA 2010
Query 2031 CACAACAATCTCTCAGGTCAAATCCCACCAAGTTTCAAAGATATGCTAGCACTAACACAC 2090
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 2011 CACAACAATCTCTCAGGTCAAATCCCACCAAGTTTGAAAGATATGCTAGCACTAACATAC 2070
Query 2091 GTCGATGTATCACACAACAACCTCCAAGGTCCAATTCCAGATAACGCAGCGTTTCGAAAC 2150
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2071 ATCGATGTATCACACAACAACCTCCAAGGTCCAATTCCAGATAACGCAGCGTTCCGAAAC 2130
Query 2151 GCACCTCCAGATGCTTTTGAAGGTAACAAAGACTTATGTGGTAGTGTTAACACCACACAA 2210
||| ||||| | || || ||||||||||| |||||||||||| | | |||| | |
Sbjct 2131 GCATCTCCAAACGCATTGGAAGGTAACAACGACTTATGTGGT-GA-T-AACA--A-A--- 2181
Query 2211 GGCTTGAAGCCATGTTCAATCACATCCTCAAAGAAATCACACAAGGATCGAAACCTAATC 2270
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2182 GCCTTGAAGCCATGTTCAATCACATCCTCCAAGAAATCACACAAGGATCGAAACCTAATC 2241
Query 2271 ATCTACATACTAGTTCCGATCATCGGAGCAATCATAATCCTCTCCGTCTGCGCCGGAATC 2330
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2242 ATCTACATACTAGTTCCAATCATCGGAGCAATCATAATCCTCTCCGTCTGCGCCGGAATC 2301
Query 2331 TTCATCTGTTTCCGTAAACGAACAAAACAAATCGAGGAGCA-TACAGATTCAGAATCAGG 2389
|||||||||||||||||| |||| ||||||||||| || | | ||||||||||||| ||
Sbjct 2302 TTCATCTGTTTCCGTAAAAGAACCAAACAAATCGAAGAAAACT-CAGATTCAGAATCCGG 2360
Query 2390 AGGAGAAACATTATCAATCTTCAGCTTCGACGGCAAAGTCCGATACCAAGAGATCATCAA 2449
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 2361 AGGAGAAACATTATCAATCTTCAGCTTCGACGGAAAAGTCCGATACCAAGAAATCATCAA 2420
Query 2450 AGCAACAGGAGAATTCGATCCAAAATACCTAATCGGAACCGGAGGACACGGCAAAGTCTA 2509
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2421 AGCAACAGGAGAATTCGATTCAAAATACCTAATCGGAACCGGAGGACACGGCAAAGTCTA 2480
Query 2510 CAAAGCAAAGCTACCAAACGCAATCATGGCGGTGAAAAAGCTAAACGAAACAACAGACTC 2569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2481 CAAAGCAAAGCTACCAAACGCAATCATGGCGGTGAAAAAGCTAAACGAAACAACAGACTC 2540
Query 2570 ATCAATCTCAAATCCATCAACAAAACAAGAGTTTCTCAACGAAATCAGAGCACTAACCGA 2629
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2541 ATCAATCACAAATCCATCAACAAAACAAGAGTTTCTCAACGAAATCAGAGCACTAACCGA 2600
Query 2630 GATCCGTCACCGGAACGTCGTGAAACTCTTCGGATTCTGCTCGCATCGCCGCAACACGTT 2689
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2601 GATCCGTCACCGGAACGTCGTGAAACTCTTCGGATTCTGCTCGCACCGCCGCAACACGTT 2660
Query 2690 TCTGGTTTACGAGTACATGGAGAGAGGAAGCTTGAGGAAAGTTTTGGAGAATGATGATGA 2749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2661 TCTGGTTTACGAGTACATGGAGAGAGGAAGCTTGAGGAAAGTTTTGGAGAATGATGAAGA 2720
Query 2750 AGCGAAGAAGTTAGATTGGGGAAAGAGGATCAACGTTGTGAAAGGTGTGGCTCATGCTTT 2809
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2721 AGCGAAGAAGTTAGATTGGGGAAAGAGGATCAATGTTGTGAAAGGTGTGGCTCATGCGTT 2780
Query 2810 GTCTTATATGCATCATGATCGGTCTCCGGCGATTGTTCACCGTGATATTAGTAGTGGGAA 2869
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2781 GTCGTATATGCATCATGATCGGTCTCCGGCGATTGTTCACCGTGATATTAGTAGCGGGAA 2840
Query 2870 TATTCTTCTCGGCGAGGATTATGAAGCGAAGATCTCTGATTTTGGTACTGCGAAGCTTCT 2929
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2841 TATTCTTCTCGGTGAGGATTATGAAGCGAAGATCTCTGATTTTGGTACTGCGAAGCTTCT 2900
Query 2930 TAAACCGGATTCTTCAAATTGGTCCGCCGTTGCTGGTACTTACGGCTATGTTGCTCCAGA 2989
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2901 TAAACCGGATTCTTCGAATTGGTCCGCCGTTGCTGGTACTTACGGTTATGTTGCTCCAGA 2960
Query 2990 ACTAGCTTATGCGATGAAAGTGACTGAGAAATGCGATGTGTATAGCTTTGGAGTTCTAAC 3049
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 ACTAGCATACGCAATGAAAGTGACTGAGAAATGCGATGTGTATAGCTTTGGAGTTCTAAC 3020
Query 3050 ACTTGAAGTGATCAAAGGAGAGCATCCAGGAGATCTAGTTTCAACTCTTTCATCCTCACC 3109
||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 3021 ACTTGAAGTGATCAAAGGAGAGCATCCGGGAGATCTAGTTTCAACTCTTTCATCATCTCC 3080
Query 3110 TCCCGATGCAACTCTGTCACTGAAAAGCATTTCCGACCACCGGCTACCGGAACCGACACC 3169
||| || || |||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 3081 TCCGGACACATCTCTGTCATTGAAAAGCATTTCCGACCACCGGCTACCGGAACCGACGCC 3140
Query 3170 GGAGATTAAAGAGGAGGTCTTAGAGATTTTGAAAGTTGCACTTTTGTGTTTACATTCTGA 3229
||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 3141 GGAGACTAAAGAGGAGGTCTTAGAGATTTTGAAAGTTGCACTTATGTGCTTACATTCTGA 3200
Query 3230 TCCACAAGCTCGCCCAACAATGctctctatctccactgccttttcttaagaacttgtctc 3289
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 3201 TCCACAAGCTCGCCCAACAATGCTCTCAATCTCCACTGCCTTTTCTTAAGAACTTGTCCC 3260
Query 3290 ttctctgactctctcta 3306
|||||||| ||||||||
Sbjct 3261 TTCTCTGAGTCTCTCTA 3277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131488914715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5