BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G08870.1 Length=1284 Score E Sequences producing significant alignments: (Bits) Value Ahg489781 jgi|Araly1|489781|fgenesh2_kg.6__2915__AT4G08870.1 1820 0.0 Ahg489723 jgi|Araly1|489723|fgenesh2_kg.6__2857__AT4G08900.1 1181 0.0 > Ahg489781 jgi|Araly1|489781|fgenesh2_kg.6__2915__AT4G08870.1 Length=1234 Score = 1820 bits (985), Expect = 0.0 Identities = 1113/1173 (95%), Gaps = 16/1173 (1%) Strand=Plus/Plus Query 2 ACTTATACCTCACTGACTTACTACAAATCAGATATGTGGAAGATTGGGCAGAGAGGAGTT 61 |||||||||||||||| |||| | | ||||||||||||||||||||||||||||||||| Sbjct 1 ACTTATACCTCACTGAGTTAC-A-ATTTCAGATATGTGGAAGATTGGGCAGAGAGGAGTT 58 Query 62 CCCTATTTCCAGAGACTCATTGCTGCGCCGTTCACGACCTTGCGGTCCTTGCCAACTTCT 121 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 59 CCCTATTTCAAGAGACTCATTTCTGCGCCGTTCACGACCTTGCGGTCCTTGCCAACTTCT 118 Query 122 TTGGTCGAGACAGGGCAGAACCGTGTCATTGATGCTTCGTTAACTCTCATCCGTGAAAGG 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 TTGGTCGAGACAGGGCAGAACCGTGTCATTGATGCTTCGTTAACTCTCATCCGTGAAAGG 178 Query 182 GCAAAACTCAAAGGAGAGTTAGTGCGACTCATAGGAGGAGCAAAAGCTACAACAGCTCTT 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 GCAAAACTCAAAGGAGAGTTAGTGCGACTCATAGGAGGAGCAAAAGCTACAACAGCTCTT 238 Query 242 CTTGGAGTACCACTTGGTCACAACTCTTCTTTTCTTGAAGGCCCAGCCTTGGCTCCTCCT 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 CTTGGAGTACCACTTGGTCACAACTCTTCTTTTCTTGAAGGCCCAGCCTTGGCTCCTCCT 298 Query 302 CATGTAAGGGAAGCTATTTGGTGTGGTAGTACAAACTCCACCACTGAAGAAGGGAAGGAG 361 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 299 CATGTAAGGGAAGCTATTTGGTGTGGTAGCACAAATTCCACCACTGAAGAAGGGAAGGAG 358 Query 362 CTAAAAGATCCACGTGTTCTAAGTGATGTTGGTGATATTCCGGTACAAGAGATTAGAGAA 421 |||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 359 CTAAAAGATCCACGGGTTTTAAGTGATGTTGGTGATATTCCGGTACAAGAAATTAGAGAA 418 Query 422 ATGGGGGTTGATGATGATAGACTTATGAAAGTAGTAAGTGAATCTGTGAAGCTGGTGATG 481 ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| Sbjct 419 ATGGGGGTTGATGATGATAGACTCATGAATGTAGTAAGTGATTCTGTGAAGCTGGTGATG 478 Query 482 GAAGAGGAACCATTGCGCCCGCTGGTCATAGGTGGAGACCATTCCATATCTTATCCTGTT 541 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 479 GAAGAGGAACCATTGCGCCCGCTGGTCATTGGTGGAGACCATTCCATATCTTATCCTGTT 538 Query 542 GTGAGAGCTGTTTCGGAGAAACTTGGAGGACCCGTGGATATTCTTCATCTTGATGCACAT 601 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 539 GTGAGAGCGGTTTCGGAGAAACTGGGAGGACCCGTGGATATTCTTCATCTTGATGCACAT 598 Query 602 CCCGATATATATGACCGTTTTGAAGGCAATTATTACTCTCATGCATCTTCTTTTGCTCGT 661 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 599 CCAGATATATATGACCGTTTCGAAGGCAATTATTACTCTCATGCATCTTCTTTTGCTCGT 658 Query 662 ATCATGGAAGGTGGCTATGCGCGGCGGCTTTTACAGGTTGGGATCAGATCCATAAACAAA 721 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 659 ATCATGGAAGGTGGCTATGCGCGGCGGCTTTTACAGGTTGGGATCAGATCGATAAACAAG 718 Query 722 GAAGGACGGGAACAAGGCAAGAGGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCA 781 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 719 GAAGGACGGGAACAAGGCACGAAGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCA 778 Query 782 AAAGATCGCCAAATGTTGGAAAACTTGAAACTAGGGGAAGGAGTGAAGGGCGTGTATATC 841 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 AAAGATCGCCAAATGTTGGAAAACTTGAAACTAGGGGAAGGAGTGAAGGGCGTGTATATC 838 Query 842 TCGATCGATGTTGACTGTCTCGATCCGGGATTCGCGCACGGAGTGTCCCACTTCGAACCA 901 |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| Sbjct 839 TCGATCGATGTTGACTGTCTCGATCCAGGATTTGCACACGGAGTGTCCCACTTCGAACCA 898 Query 902 GGAGGTCTTTCTTTCCGAGACGTCCTTAACATATTACACAACCTTCAGGGAGATTTGGTG 961 |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| Sbjct 899 GGAGGTCTTTCTTTCCGAGACGTCCTTAACATCTTACATAACCTTCAAGGAGATTTAGTG 958 Query 962 GGGGCTGATGTTGTTGAGTACAATCCACAGCGTGATACCGCTGATGACATGACGGCAATG 1021 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 959 GGGGCTGATGTTGTTGAGTACAACCCGCAGCGTGATACCGCTGATGACATGACGGCAATG 1018 Query 1022 GTCGCGGCTAAGTTTGTTAGAGAGCTAGCCGCAAAAATGTCAAAATGAATTTAAATGGTA 1081 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| Sbjct 1019 GTCGCGGCTAAGTTTGTTAGAGAGCTAGCCGCAAAAATGTCAAAATAAATTTGAATCGTA 1078 Query 1082 -----CT-TT--GGAGTTTAATCGT-TGAAGCTTGTAATAT-GCAATAAGTGTGGTCTCA 1131 || || ||||||| ||||| | |||| |||| ||| | ||||||||||| | | Sbjct 1079 TTTTACTATTTTGGAGTTTCATCGTGT-AAGCCTGTATTATTG-AATAAGTGTGGCCCCT 1136 Query 1132 TAGACATG-GTATCGAATAAGCTTAATATCAAT 1163 | ||| | | |||||||| ||||||||||||| Sbjct 1137 TGGACG-GAGCATCGAATATGCTTAATATCAAT 1168 > Ahg489723 jgi|Araly1|489723|fgenesh2_kg.6__2857__AT4G08900.1 Length=1200 Score = 1181 bits (639), Expect = 0.0 Identities = 848/950 (89%), Gaps = 10/950 (1%) Strand=Plus/Plus Query 126 TCGAGACAGGGCAGAACCGTGTCATTGATGCTTCGTTAACTCTCATCCGTGAAAGGGCAA 185 |||||| |||||| || ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 115 TCGAGAAAGGGCAAAATCGTGTCATTGATGCTTCGTTAACTCTCATTCGTGAAAGGGCAA 174 Query 186 AACTCAAAGGAGAGTTAGTGCGACTCATAGGAGGAGCAAAAGCTACAACAGCTCTTCTTG 245 |||| ||||||||||||||||| || |||| ||||| |||||| ||||| ||||||||| Sbjct 175 AACTAAAAGGAGAGTTAGTGCGTCTTTTAGGTGGAGCTAAAGCTTCAACATCTCTTCTTG 234 Query 246 GAGTACCACTTGGTCACAACTCTTCTTTTCTTGAAGGCCCAGCCTTGGCTCCTCCTCATG 305 |||||||||||||||||||||||||||||||| |||| || || || |||||||||| | Sbjct 235 GAGTACCACTTGGTCACAACTCTTCTTTTCTTCAAGGTCCTGCTTTTGCTCCTCCTCGTA 294 Query 306 TAAGGGAAGCTATTTGGTGTGGTAGTACAAACTCCACCACTGAAGAAGGGAAGGAGCTAA 365 | || ||||||||||||||||||||||||||||| | |||||||||||||||||| | | Sbjct 295 TTAGAGAAGCTATTTGGTGTGGTAGTACAAACTCTGCAACTGAAGAAGGGAAGGAGTTGA 354 Query 366 AAGATCCACGTGTTCTAAGTGATGTTGGTGATATTCCGGTACAAGAGATTAGAGAAATG- 424 | |||||||| ||||||| ||||||||| ||| |||| |||||||||||||||| | || Sbjct 355 AGGATCCACGGGTTCTAACTGATGTTGGGGATGTTCCAGTACAAGAGATTAGAG-ATTGT 413 Query 425 GGGGTTGATGATGATAGACTTATGAAAGTAGTAAGTGAATCTGTGAAGCTGGTGATGGAA 484 |||||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||||| Sbjct 414 GGGGTTGATGATGATAGACTGATGAATGTAATAAGTGAATCTGTGAAGTTGGTGATGGAT 473 Query 485 GAGGAACCATTGCGCCCGCTGGTCATAGGTGGAGACCATTCCATATCTTATCCTGTTGTG 544 |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 474 GAGGAACCATTGCGCCCGCTGGTCCTAGGTGGAGACCATTCTATATCTTATCCTGTTGTG 533 Query 545 AGAGCTGTTTCGGAGAAACTTGGAGGACCCGTGGATATTCTT-CATCTTGATGCACATCC 603 ||||| ||||| ||||| ||||||||||| ||||| ||| || ||||||||||||||||| Sbjct 534 AGAGCGGTTTCTGAGAAGCTTGGAGGACCTGTGGACATT-TTGCATCTTGATGCACATCC 592 Query 604 CGATATATATGACCGTTTTGAAGGCAATTATTACTCTCATGCATCTTCTTTTGCTCGTAT 663 ||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||| Sbjct 593 GGATATATATGATTGTTTTGAAGGAAATAAGTACTCTCATGCATCTTCTTTTGCTCGTAT 652 Query 664 CATGGAAGGTGGCTATGCGCGGCGGCTTTTACAGGTTGGGATCAGATCCATAAACAAAGA 723 ||||||||||||||||||||| ||||||||||||||||||||||||| |||||| | || Sbjct 653 CATGGAAGGTGGCTATGCGCGTAGGCTTTTACAGGTTGGGATCAGATCGATAAACCAGGA 712 Query 724 AGGACGGGAACAAGGCAAGAGGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCAAA 783 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 713 AGGACGGGAACAAGGCAAGAGGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCAAA 772 Query 784 AGATCG-CCAAATGTTGGAAAA-CTTGAAACTAGGGGAAGGAGTGAAGGGCGTGTATATC 841 |||||| |||| |||||||||| || |||||||||||||||||||||||| || || ||| Sbjct 773 AGATCGTCCAA-TGTTGGAAAATCT-GAAACTAGGGGAAGGAGTGAAGGGGGTATACATC 830 Query 842 TCGATCGATGTTGACTGTCTCGATCCGGGATTCGCGCACGGAGTGTCCCACTTCGAACCA 901 ||||| || ||||||||||||||||||| ||| || | ||||||||||||| |||||||| Sbjct 831 TCGATAGACGTTGACTGTCTCGATCCGGCATTTGCACCCGGAGTGTCCCACATCGAACCA 890 Query 902 GGAGGTCTTTCTTTCCGAGACGTCCTTAACATATTACACAACCTTCAGGGAGAT-TTGGT 960 |||||||| |||||||| || ||||||||||| ||||| || ||||||| |||| ||| | Sbjct 891 GGAGGTCTCTCTTTCCGTGATGTCCTTAACATCTTACATAATCTTCAGGCAGATGTTGTT 950 Query 961 GGGGGCTGATGTTGTTGAGTACAATCCACAGCGTGATACCGCTGATGACATGACGGCAAT 1020 |||| |||||||||| |||| ||| || || |||||||| | ||| | |||||| ||||| Sbjct 951 GGGG-CTGATGTTGTCGAGTTCAACCCGCAACGTGATACTGTTGACGGCATGACAGCAAT 1009 Query 1021 GGTCGCGGCTAAGTTTGTTAGAGAGCTAGCCGCAAAAATGTCAAAATGAA 1070 ||| || |||||| |||||||||| ||||||| ||||| || ||||||| Sbjct 1010 GGTTGCTGCTAAGCTTGTTAGAGAATTAGCCGCGAAAATCTCGAAATGAA 1059 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47996752503 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5