BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G08980.1 Length=1537 Score E Sequences producing significant alignments: (Bits) Value Ahg942565 jgi|Araly1|942565|scaffold_603109.1 1727 0.0 > Ahg942565 jgi|Araly1|942565|scaffold_603109.1 Length=1108 Score = 1727 bits (935), Expect = 0.0 Identities = 1045/1099 (95%), Gaps = 4/1099 (0%) Strand=Plus/Plus Query 126 TTTGTTAGATGGAAGAAGATTGCGAGTTTCGACATTGGGATGAGTTGATTCCAGATGCTC 185 |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 14 TTTG-TAGATGGAAGAAGATTGCGAGTTTCGACATTGGGATGAGTTAATTCCAGACGCTC 72 Query 186 TTGGTTTAATCTTTAGCCACTTACCTCTTCAAGAAGTACTAACAGTGGTGCCTAGAGTTT 245 |||||||||||||||| || ||| |||||||||| ||||||||||||||||||||||||| Sbjct 73 TTGGTTTAATCTTTAGTCATTTAGCTCTTCAAGAGGTACTAACAGTGGTGCCTAGAGTTT 132 Query 246 GCAAAGCATGGAACAGAGCTGTTACTGGACCTTATTGTTGGCAAGAGATTGACATTGAGC 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 133 GCAAAGCATGGAACAGAGCTGTTACTGGACCTTATTGTTGGCAAGAGATTGACATTGAGC 192 Query 306 TGTGGAGTAACCGTTTTCACCAGTCTGATCATCTTGACCGGATGCTTGAGATGTTGATCC 365 ||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 193 TGTGGAGTAACCGTTGTCATCAGTCTGATCATCTTGACCGGATGCTTGAAATGTTGATCC 252 Query 366 CTAGAAGCGCTGGCTCTTTGCGAAAACTCTCCGTTACTGGCCTTCGAAATGACTCTATCT 425 |||| ||| |||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 253 CTAGGAGCTCTGGTTCGTTGCGAAAACTCTCCGTTACTGGCCTTCGAAATGACTCTATCT 312 Query 426 TCTCCTTCATTGCACAACATGCTGGTTCACTTAAGACCTTGAAGGTGCCAAGAAGTGGTC 485 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 313 TCTCCTTCATTGCACAACATGCTGGTTCACTTAAAACCTTGAAGGTGCCAAGAAGTGGTC 372 Query 486 TGACTAATTCGGGTGTGGTAAACGTAGCTGAAAAGCTCTCGTCTCTCACTTTCTTGGATT 545 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 373 TGACTAATTCGGGTGTGGTAAACGTAGCTGAAAAGCTTTCGTCTCTCACTTTCTTGGACT 432 Query 546 TGAGCTACTGCTGCAAAATAGGCCCAGAGGCGATACAAGCCATAGGAAAACACTGTAAAT 605 ||||||||||||||||| |||| |||||||||||||||||||||||||| || ||||||| Sbjct 433 TGAGCTACTGCTGCAAAGTAGGTCCAGAGGCGATACAAGCCATAGGAAACCATTGTAAAT 492 Query 606 CACTGAGAGAGTTTTGCAGAAACATGCATCCATTGGATGTAGCAAGTGTTGTCTCTCACG 665 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 493 CCCTGAGAGAGTTTTGCAGAAACATGCATCCATTGGATGTAGCAAGTGTTGTCTCTCACG 552 Query 666 ACGATGAAGCTTATGCTATCGCCAATACAATGCCGAAGCTGAAGCGGTTAGAGATAGCTT 725 |||||||||||||||| || ||||| |||||||| ||||||||||||||||| || || | Sbjct 553 ACGATGAAGCTTATGCAATTGCCAACACAATGCCAAAGCTGAAGCGGTTAGAAATTGCAT 612 Query 726 ACCACCGAGTCAGCACAGAAGGAGTACTCAAGATCTTATCGTGCTGTGTTTTTCTTGAGT 785 | ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 613 ATCACCGAGTCAGCACAGAAGGAGTACTCAAAATCTTATCGTGCTGCGTTTTTCTTGAGT 672 Query 786 TCTTGGAACTTAGAGGCTGTTGGGACGTGCAACTTGATAACAAGTTTTTCAAAGAGAAGT 845 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| Sbjct 673 TCTTGGAACTTAGAGGCTGTTGGGACGTGCAACTCGATAACAAGTTCTTCAAAGAAAAGT 732 Query 846 TTCCGGATATGAAAGTGTTAGGTCCACGCGTGATCGGATTCTATGATATGATAAATGATT 905 |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 733 TTCCTGATATGAAAGTGTTAGGTCCACGCGTGATCGGATTCTATGATATGATAAACGATT 792 Query 906 GGGAGGATTGCTGCTCAGATTACTTCTCAGATGGGTCTGATTACTTGGCTTGGGAGTTTT 965 |||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| Sbjct 793 GGGAGGATTGCTGCTCAGATTATTTCTCAGATGGGTCTGATTACCTGGCCTGGGAGTTTT 852 Query 966 TTGAAGATGGTGTAATGGGAGAGTTCTATGAGGATGAGTTTGAGCATGGTTGGGACGATA 1025 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 853 TTGAAGATGGTGTAATGGGAGAGTTCTATGAAGATGAGTTTGAGCATGGTTGGGATGATA 912 Query 1026 ATTTTTATGCGGAAAACGCAGTTTTAGACATGGAACCGCATATTTGGCCACCATCTCCAT 1085 ||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||| Sbjct 913 ATTTTTATGCGGACAACGCAATTTTAGACATGGAACCGCATGTTTGGCCGCCATCTCCAT 972 Query 1086 GAACCAGGCCTTGTTATGTTCGAAGTCTCTACCTAAAAGTTGCAACTAGGAATGGTTTTA 1145 |||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 973 GAACCAGGTCTTGTTATGTTCGAAGTCTCTACCTAAA-GTTGCTACTAGGAATGGTTTTA 1031 Query 1146 GCCTCTCTTAAGTGTCTTAATCTATGTATGGTGCTTGAACTTGTGTGGCTTCTTTGTGTT 1205 |||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1032 GCCTCT-T-ATGTGTCTTGATCTATGTATGGTGCTTGAACTTGTGTGGCTTCTTTGTGTT 1089 Query 1206 ATTCTAATCTAAAAGGCTT 1224 |||||||| |||||||||| Sbjct 1090 ATTCTAATATAAAAGGCTT 1108 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57554360195 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5