BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09130.1
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942696 jgi|Araly1|942696|scaffold_603240.1 1358 0.0
Ahg942692 jgi|Araly1|942692|scaffold_603236.1 675 0.0
Ahg942695 jgi|Araly1|942695|scaffold_603239.1 597 5e-170
Ahg489785 jgi|Araly1|489785|fgenesh2_kg.6__2919__AT4G09110.1 351 4e-96
Ahg942693 jgi|Araly1|942693|scaffold_603237.1 278 8e-74
> Ahg942696 jgi|Araly1|942696|scaffold_603240.1
Length=1108
Score = 1358 bits (735), Expect = 0.0
Identities = 965/1077 (90%), Gaps = 12/1077 (1%)
Strand=Plus/Plus
Query 1 ATGACTATCTTCACAAGAGATTTCAGCCATCGGATCCTAGCATGTGTTTTATTGCCACTC 60
|||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 21 ATGACTATCTTCACTAGAGATTTCAGCCATCGGATCGTAGTATGTGTTTTATTGCCACTC 80
Query 61 TTCCTTTTCCAATGTTTGCCTTACGTAACTTGCCAGCAAGGGTCGGAATCAGCAGGTCGC 120
|||||||||||||||||||||||||||| ||||||||||| ||| | ||| | ||||
Sbjct 81 TTCCTTTTCCAATGTTTGCCTTACGTAATTTGCCAGCAAGAGTCCG---CAG-A--TCGC 134
Query 121 AATGGAA-AAAGTAAAGAGTCATCGATAATTGGGATCGTTTTGCTTTCGTTGTTCCTCTT 179
||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 135 AATGGAAGAAAC-AAAGTCTCATCGATAATTGGGATCGTTTTGCTTTCATTGTTCCTCTT 193
Query 180 ACTTTTGGTCGTTTATTGCTTAAACTATGGATGTTGTATTGAAGAGAATGAGACAGGAGG 239
|||||||| |||| ||||| ||||||||||||||| |||||||| |||| |||||||
Sbjct 194 TCTTTTGGTTTTTTACTGCTTGCACTATGGATGTTGTAGTGAAGAGATTGAGGCAGGAGG 253
Query 240 TCATGAAGTGTTACACAGTAGAGTGAGGCGTGGGATTGACAAGGACGTCATCGAGTCCTT 299
|||| ||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 254 TCATCAAGTGTTGCACAGTAGAGTGAGGTGTGGGATTGACAAGGATGTCATCGAGTCCTT 313
Query 300 TCCGGCTTTCCTATATTCAGAGGTTAAAGCGTTCAAGATAGGCAACGGCGGAGTTGAATG 359
|||||||||||| |||||||||||||||| | ||||||||||||| |||||||| |||||
Sbjct 314 TCCGGCTTTCCTCTATTCAGAGGTTAAAGGGCTCAAGATAGGCAAAGGCGGAGTAGAATG 373
Query 360 TGCAATTTGTCT-ATGCGAGTTTGAAGACGAAGAGCCGCTACGTTGGATGCCTCCTTGTA 418
||||||||| || | |||||||||| || |||||| ||||||||||||||||||||||||
Sbjct 374 TGCAATTTG-CTTAAGCGAGTTTGAGGATGAAGAGTCGCTACGTTGGATGCCTCCTTGTA 432
Query 419 GCCATACTTTCCATGCTAATTGCATTGACGAATGGCTCTCTTCTCGGTCCACATGTCCCG 478
|||| || |||||||||||||||||||||| |||||||||||||||||| |||||||| |
Sbjct 433 GCCACACCTTCCATGCTAATTGCATTGACGTATGGCTCTCTTCTCGGTCTACATGTCCAG 492
Query 479 TCTGCCGTGCAAATTTGTCTCTGAAGTCCGGTGACAGCTTTCCACATCCGAGTATGGATG 538
|||| |||||| ||||||||||||| ||||||| ||||||||| |||| || ||||||
Sbjct 493 TCTGTCGTGCAGATTTGTCTCTGAAACCCGGTGAGAGCTTTCCATATCCAAGCATGGATA 552
Query 539 TTGAAACGGGAAATGCACAG-AGAGGTGTTCAAGAATCCCCCGATGAGAGAAGCTTGACA 597
||||||| ||||||||| || |||| ||||| ||||||||| | |||| ||||||||||
Sbjct 553 TTGAAACAGGAAATGCA-AGGAGAGTTGTTCTTGAATCCCCCAACGAGATAAGCTTGACA 611
Query 598 GGTAGTAGTGTTACATGTAATAATAATGCAAATTATACAACACCTCGATCAAGATCTACA 657
|||| ||||| ||||| || ||||||||||||||| |||||||||||| |||||||||
Sbjct 612 GGTAACAGTGTGACATGGAACGATAATGCAAATTATAGAACACCTCGATCGAGATCTACA 671
Query 658 GGGTTATTGTCGAGCTGGCATGTGCCTGAGCTATTCCTCCCTCGATCTCATTCGACTGGA 717
||||||||||| ||||||| |||| ||||| ||||| ||||||||||||||||||| |||
Sbjct 672 GGGTTATTGTCAAGCTGGCCTGTGGCTGAGATATTCTTCCCTCGATCTCATTCGACCGGA 731
Query 718 CATTCATTGGTTCAACCATGTCAGAATATAGACCGATTCACACTGCAATTACCGGAGGAG 777
|||||| ||||||||| | || |||||||||| ||||||||| |||| ||||||||||||
Sbjct 732 CATTCACTGGTTCAACTAGGTGAGAATATAGATCGATTCACATTGCAGTTACCGGAGGAG 791
Query 778 GTGCAAAGACAATTGGTAAGCCTGAACCTGATAAAGAGAAGCCATATAGCCTTACCTCGA 837
|| |||||| ||||||| |||||||| ||| |||||||| |||| |||||||||||||||
Sbjct 792 GTACAAAGAGAATTGGTTAGCCTGAATCTGTTAAAGAGAGGCCACATAGCCTTACCTCGA 851
Query 838 GCCAGGAGTTCTAGACAGGGCTACAGGAGCGGAAGCGTTGGGAACGAGAGAACCGGTTTC 897
||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||
Sbjct 852 GCCAGGAGTTCTAGACAAGGCTACAGGAGCGGAAGCGTTGGGAACGACAGAAGCGGTTTC 911
Query 898 TCTCAAGGACGGCAAACACTCAGGCGAGCCATATCTACGTCGCTATCTTTCTCTTTTCAA 957
||||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||
Sbjct 912 TCTCAGGGACGGCAAACGCTCAGGCGAGCCATATCTATGTCGCTCTCTTTCTCTTTTCAA 971
Query 958 CCTGCTCCTGTTCGGTCCACACTTGACAGGGACAATCTAATGCGAGAGACTTCCCAAGCT 1017
||||||||| ||||||| ||||||| ||||||||| ||||| ||||||||||| ||||||
Sbjct 972 CCTGCTCCTATTCGGTCTACACTTGGCAGGGACAACCTAATACGAGAGACTTCACAAGCT 1031
Query 1018 AATGACAAAGATTTTGGTGAACGGTCATTCCAACGCCTCATGCCAGAGAAAAACTAA 1074
|||||| | ||||||||||||||||| ||||| |||||||||||||||| || ||||
Sbjct 1032 AATGACGACGATTTTGGTGAACGGTCGTTCCAGCGCCTCATGCCAGAGATAATCTAA 1088
> Ahg942692 jgi|Araly1|942692|scaffold_603236.1
Length=1093
Score = 675 bits (365), Expect = 0.0
Identities = 862/1092 (79%), Gaps = 73/1092 (7%)
Strand=Plus/Plus
Query 1 ATGACTATCTTCACAAGAGATTTCAG-C--CATCGGATCCTAGCATGTGTTTTATTGCCA 57
|||| ||||||||| ||||| || | | |||||| || || || ||||| |||||||
Sbjct 21 ATGAATATCTTCAC--GAGATATC-GCCTTCATCGGGTCGTATCAAGTGTTATATTGCCG 77
Query 58 CTCTTCCTTTTCCAAT-GTTTGCCTTACGTAACTTGCCAGCAAGGGTCGGAATCAGC-AG 115
||||||||||||| || |||||||||||| || |||||||||| ||||| ||| || |
Sbjct 78 CTCTTCCTTTTCC-ATCTTTTGCCTTACGTTACATGCCAGCAAGAGTCGGGATCCGCAAA 136
Query 116 GTCGC-AATGGA-AAA---A---GTAAAGAGTCATCGATAATTGGGATCGTTTTGCTTTC 167
| | | |||| | ||| | | | || |||||| || | |||||| ||||| |
Sbjct 137 G-C-CTAATGTACAAACCGATTTCTCGACAG-AATCGATTATCGCAATCGTTATGCTTGC 193
Query 168 -GT-TGTTCCT-C-TTACTTTTGGTCGT-TTATTGCTTAAACTATGGATGTTGTAT--TG 220
| | || | | ||| ||||| | || |||||| || || | || ||| |
Sbjct 194 AATAT-TTATTACATTAAGCATGGTC-TCTTGTTGCTTGCAC--TGCACATTCTATAGGG 249
Query 221 AAGAGAATGAGACAGG-AGGTCATGAAGTGTTACACAGTAGAGTGAGGCGTGGGATTGAC 279
||||| ||| | || ||| || |||||||| |||| ||| | ||||| ||| | ||
Sbjct 250 CAGAGACCGAGGC-GGCAGGCCAAGAAGTGTTGCACAATAGGGCAAGGCGCGGGCTCGAG 308
Query 280 AAGGACGTCATCGAGTCCTTTCCGGCTTTCCTATATTCAGAGGTTAAAGCGTTCAAGATA 339
||||| ||||||||||| ||||||| |||||| |||||||| ||||||| | ||||||||
Sbjct 309 AAGGAAGTCATCGAGTCATTTCCGGTTTTCCTGTATTCAGAAGTTAAAGGGCTCAAGATA 368
Query 340 GGCAACGGCGGAGTTGAATGTGCAATTTGTCTATGCGAGTTTGAAGA-CGAAGAGCCGCT 398
||||| |||||||| |||||||||||||||||| | |||||||| || | |||| ||||
Sbjct 369 GGCAAAGGCGGAGTAGAATGTGCAATTTGTCTAAGTGAGTTTGAGGATC-AAGAAACGCT 427
Query 399 ACGTTGGATGCCTCCTTGTAGCCATACTTTCCATGCTAATTGCATTGACGAATGGCTCTC 458
|||||||||||||||||||||||| |||||||||||||||||||| || | ||||||||
Sbjct 428 ACGTTGGATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTC 487
Query 459 TTCTCGGTCCACATGTCCCG-TCTGCCGTGCAAATTTGTCTCTGAAGTCCGGTGACAGCT 517
||| || ||||| || |||| |||| ||||||||| ||||| |||| || || || |
Sbjct 488 TTCCCGATCCACCTG-CCCGGTCTGTCGTGCAAATCTGTCTTTGAAACCCAACGAGAGTT 546
Query 518 TTCCACATCCGAGTATGGATGTTGAAACGGGAAATGCACAGAGAGGTGTTCAAGAATCCC 577
||||| |||| | |||||||||||||||||| | | |||||||||| |||
Sbjct 547 TTCCATATCCAAACATGGATGTTGAAACGGGA---G----G-----TGTTCAAGAACCCC 594
Query 578 CCGATGAGAGAAGCTTGACAGGTAGTAGTGTTACATGTAATAATAATGCAAATTATACAA 637
|| ||||||||||||||| ||| || | || | | | |||||||||||||
Sbjct 595 CCAATGAGAGAAGCTTGA----TAG--GT---A-AT--A-T--T---GCAAATTATACAA 636
Query 638 CACCTCGATCAAGATCTACAGGGT-TATTGTCGAGCTGGCATGTGCCTGAGCTATTCCTC 696
|||||||||| || |||||||| | ||||| | | |||| | || ||||| ||||| ||
Sbjct 637 CACCTCGATCGAGGTCTACAGG-TCTATTGGCAAACTGGAAAATGGCTGAGATATTCGTC 695
Query 697 CCTCGATCTCATTCGACTGGACATTCATTGGTTCAACCATGTCAGAATATAGACCGATTC 756
||| ||||||||||||| ||||||||||||||||||| | || | ||| |||||||||||
Sbjct 696 CCTAGATCTCATTCGACCGGACATTCATTGGTTCAACTAGGTGAAAATCTAGACCGATTC 755
Query 757 ACACTGCAATTACCGGAGGAGGTGCAAAGACAATTGGTAAGCCTGAACCTGATAAAGAGA 816
|| ||||||||||||||||||||||| ||||||||||| ||| |||| || || | ||||
Sbjct 756 ACTCTGCAATTACCGGAGGAGGTGCAGAGACAATTGGTTAGCTTGAATCTAATCAGGAGA 815
Query 817 AGCCATATAGCCTTACCTCGAGCCAGGAGTTCTAGACAGGGCTACAGGAGCGGAAGCGTT 876
||||| || |||||||||| ||||| |||||| |||||||||||||| ||||| ||||||
Sbjct 816 AGCCACATGGCCTTACCTCAAGCCATGAGTTCGAGACAGGGCTACAGAAGCGGGAGCGTT 875
Query 877 GGGAACGAGAGAACCGGTTTCTCTCAAGGACGGCAAACAC-TCAGGCGAGCCATATCTAC 935
|||| ||||||| ||||||||| | ||||||||||| | || | || ||| ||||||
Sbjct 876 GGGAGCGAGAGAGGTGGTTTCTCTGAGGGACGGCAAACGCATCTG-CGGGCCTTATCTAT 934
Query 936 GTCGCTATCTTTCTCTTTTCAACCTGCTCCTGTTCGGTCCACACTTGACAGGGACAATCT 995
||| || ||||||||||||||| || || ||||| |||| |||| ||||||| | |||
Sbjct 935 GTCTCTCTCTTTCTCTTTTCAAACTACTTCTGTTAGGTCAACACGTGACAGGAATGATC- 993
Query 996 AA-TGCGAGAGACTTCCCAAGCTAATGACAAAGATTTTGGTGAACGGTCATTCCAACGCC 1054
|| | | ||||||||||||||| || |||||| ||||||||||||||||||| ||||||
Sbjct 994 AAGTCCAAGAGACTTCCCAAGCCAAGGACAAATATTTTGGTGAACGGTCATTTGAACGCC 1053
Query 1055 TCATGCCAGAGA 1066
||||||||||||
Sbjct 1054 TCATGCCAGAGA 1065
> Ahg942695 jgi|Araly1|942695|scaffold_603239.1
Length=1003
Score = 597 bits (323), Expect = 5e-170
Identities = 705/886 (80%), Gaps = 39/886 (4%)
Strand=Plus/Plus
Query 1 ATGACTATCTTCACAAGAGATTTCAGCCATCGGATC-CTAGCATGTGTTTTATTGCCACT 59
||||||||||| | |||||| ||| | ||| ||| || || | |||| ||||| ||
Sbjct 21 ATGACTATCTTTGCGAGAGATCTCATCTATCAAATCGTTA-CAAGAATTTTGTTGCCGCT 79
Query 60 CTTCCTTTTCCAATGTTTGCCTTACGTAACTTGCCAGCAAGGGTCGGAATCAGCAGGTCG 119
|||||||| ||| | ||||||||||||||| ||||| |||| ||||||||| |||| ||
Sbjct 80 CTTCCTTTCCCATTATTTGCCTTACGTAACCTGCCAACAAGTGTCGGAATCCGCAGACCG 139
Query 120 CAATGGAAAAAGTAA------AGAGTCATCGATAATTGGGATCGT-TTTGCTTTCGTT-G 171
|||| ||||| || || | | || |||||| || || || ||| | ||
Sbjct 140 CAATAAAAAAACAAATCTCCCAGCGGAAACGGTAATTGCAATTGTGATT-CTTGCATTAT 198
Query 172 TT-CCTC-TTACTTTTGGTCGTTTATTGCTTAAACTATGGATGTTGTAT--TGAAGAGAA 227
|| ||| ||| | |||| || |||||| || | | |||||| | |||||
Sbjct 199 TTATCTCATTAAGCATCGTCGCTTGTTGCTTGCAC-A-ACACATTGTATAGCGCAGAGAT 256
Query 228 TGAGACAGG-AGGTCATGAAGTGTTACACAGTAGAGTGAGGCGTGGGATTGACAAGGACG 286
|||| | || | | || |||||||| |||| ||||| ||||| ||| |||| ||||| |
Sbjct 257 TGAGGC-GGCAAGCCAAGAAGTGTTGCACACTAGAGCGAGGCACGGGCTTGAGAAGGAAG 315
Query 287 TCATCGAGTCCTTTCCGGCTTTCCTATATTCAGAGGTTAAAGCG-TTCAAGATAGGCAAC 345
|||||||||| ||||| ||||||| |||||||| ||||||| | |||||| ||||||
Sbjct 316 TCATCGAGTCTTTTCCATCTTTCCTTTATTCAGAAGTTAAAG-GACTCAAGACAGGCAAA 374
Query 346 GGCGGAGTTGAATGTGCAATTTGTC-TATGCGAGTTTGAAGA-CGAAGAGCCGCTACGTT 403
|||||||| ||||||||| |||||| || | |||||||| || | |||| |||||||||
Sbjct 375 GGCGGAGTAGAATGTGCAGTTTGTCTTA-GTGAGTTTGAGGATC-AAGAAACGCTACGTT 432
Query 404 GGATGCCTCCTTGTAGCCATACTTTCCATGCTAATTGCATTGACGAATGGCTCTCTTCTC 463
||||||||||||||||||| |||||||||||||||||||| || | ||||||||||| |
Sbjct 433 GGATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTCCC 492
Query 464 GGTCCACATGTCCC-GTCTGCCGTGCAAATTTGTCTCTGAAGTCCGGTGACAGCTTTCCA 522
| ||||| || ||| ||||| ||||| ||| |||||| ||| || || || ||||||
Sbjct 493 GATCCACCTG-CCCGGTCTGTCGTGCGAATCTGTCTCAGAAACCCAACGAGAGTTTTCCA 551
Query 523 CATCCGAGTATGGATGTTGAAACGGGAAATGCACAGAGAGGTGTTCAAGAATCCCCCGAT 582
|||||| |||||||||||||| | | |||||||||||||| ||||| ||
Sbjct 552 TATCCGAACATGGATGTTGAAAC-------G----G-GAGGTGTTCAAGAACCCCCCAAT 599
Query 583 GAGAGAAGCTTGACAGGTAGTAGTGTTACATGTAATAATAATGCAAATTATACAACACCT 642
||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||||||||
Sbjct 600 GAGAGAAGCTTGACATGTAATAGTGTGACATGGAATAATAATGCAAATTATACAACACCT 659
Query 643 CGATCAAGATCTACAGGGTTATTGTCGAGCTGGCATGTGCCTGAGCTATTCCTCCCTCGA 702
|| || ||||||||||||||| ||||| ||||| | || ||||| ||||| ||||| ||
Sbjct 660 CGGTCGAGATCTACAGGGTTACCGTCGAACTGGCGTATGGCTGAGATATTCTTCCCTAGA 719
Query 703 TCTCATTCGACTGGACATTCATTGGTTCAACCATGTCAGAATATAGACCGATTCACACTG 762
|||||| |||| ||||||||||||||||||| | || | ||| ||||||| |||||| ||
Sbjct 720 TCTCATACGACCGGACATTCATTGGTTCAACTAGGTGAAAATCTAGACCGGTTCACATTG 779
Query 763 CAATTACCGGAGGAGGTGCAAAGACAATTGGTAAGCCTGAACCTGATAAAGAGAAGCCAT 822
|||||||||||||| |||||||| |||||||| ||| |||| ||||||| |||||||||
Sbjct 780 CAATTACCGGAGGATGTGCAAAGTCAATTGGTTAGCTTGAATCTGATAAGGAGAAGCCAA 839
Query 823 ATAGCCTTACCTCGAGCCAGGAGTTCTAGACAGGGCTACAGGAGCG 868
|| |||||||||| ||||| |||||| |||||||||||||| ||||
Sbjct 840 ATGGCCTTACCTCAAGCCATGAGTTCGAGACAGGGCTACAGAAGCG 885
> Ahg489785 jgi|Araly1|489785|fgenesh2_kg.6__2919__AT4G09110.1
Length=725
Score = 351 bits (190), Expect = 4e-96
Identities = 463/592 (78%), Gaps = 29/592 (5%)
Strand=Plus/Plus
Query 1 ATGACTATCTTCACAAGAGATTTCAGCCATCGGATCCTAGCATGTGTTTTATTGCCACTC 60
||| |||||||| | |||||| ||| | || ||||| |||| | ||||| ||||| |||
Sbjct 1 ATGGCTATCTTCGCGAGAGATCTCATCTATGGGATCGAAGCAAGGGTTTTGTTGCCGCTC 60
Query 61 TTCCTTTTCCAATGTTTGCCTTACGTAACTTGCCAGCAAGGGTCGGAATCAGCAGGTCGC 120
|||||| |||| | ||||||||||||||| ||||| |||| ||| |||| |||| |||
Sbjct 61 TTCCTTGTCCATTTTTTGCCTTACGTAACATGCCAACAAGAGTCAAAATCCGCAGACCGC 120
Query 121 AA-TGGAA-A--AA-GTAAAGA-GTCATCGATAATTGGGATCGTTTTGCTTTCGTTG-TT 173
|| | || | || | || | |||| |||||| ||| || |||| | || ||
Sbjct 121 AACAGAAATACCAATTTTCCGACGGAATCGGTAATTGCAATCATTGCGCTTGCAATGTTT 180
Query 174 -CCTC--TTACTTTTGGTCGTTTATTGCTTAAACTATGGATGTTGTATTGA--AGAGAAT 228
||| | || | ||| || || ||| || | | || ||| || |||| |
Sbjct 181 ATCTCAATAAC-CACGCTCGCTTGTTTCTTGCAC-A-ACACATTCTATAGAGCAGAGCTT 237
Query 229 GAGACAGGAGGTCATGAAGTGTTACACAGTAGAGTGAGGCGTGGGATTGACAAGG-ACGT 287
||| | | | | || |||||||| |||||||||| |||| ||||| | || |||| || |
Sbjct 238 GAGGCCGCAAGCCAAGAAGTGTTTCACAGTAGAGCGAGGAGTGGGCTCGAGAAGGAAC-T 296
Query 288 CATCGAGTCCTTTCCGGCT-TTCCTATATTCAGAGGTTAAAGCGTTCAAGATAGGCAACG 346
||||||||||||||| | ||||| |||||||||||||||| ||||||||||||||| |
Sbjct 297 CATCGAGTCCTTTCC-ATTATTCCTCTATTCAGAGGTTAAAGGGTTCAAGATAGGCAAAG 355
Query 347 GCGGAGTTGAATGTGCAATTTGTC-TATGCGAGTTTGAAGA-CGAAGAGCCGCTACGTTG 404
||||||| |||||||||||||||| || | |||||||| || | |||| ||||||||||
Sbjct 356 GCGGAGTCGAATGTGCAATTTGTCTTA-GTGAGTTTGAGGATC-AAGAAACGCTACGTTG 413
Query 405 GATGCCTCCTTGTAGCCATACTTTCCATGCTAATTGCATTGACGAATGGCTCTCTTCTCG 464
|||||||||||||||||| |||||||||||||||||||| || | ||||||||||||||
Sbjct 414 GATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTCTCG 473
Query 465 GTCCACATGTCCCGTCTGCCGTGCAAATTTGTCTCTGAAGTCCG-GTGACAGCTTTCCAC 523
|||||||||||| ||||| ||||||||| ||||||| || || |||| |||||||||
Sbjct 474 GTCCACATGTCCGGTCTGTCGTGCAAATCTGTCTCTCAAA-CCTTGTGAAAGCTTTCCAT 532
Query 524 ATCCGAGT-ATGGATGTTGAAACGGGAAATGCACAGA-GAGGTGTTCAAGAA 573
|||||| | |||||| ||||||| |||||||||| || ||| ||| | ||||
Sbjct 533 ATCCGA-TCATGGATCTTGAAACAGGAAATGCAC-GAAGAGATGTACTAGAA 582
> Ahg942693 jgi|Araly1|942693|scaffold_603237.1
Length=337
Score = 278 bits (150), Expect = 8e-74
Identities = 229/266 (86%), Gaps = 9/266 (3%)
Strand=Plus/Plus
Query 318 AGAGGTTAAAGCGTTCAAGATAGGCAACGGCGGAGTTGAATGTGCAATTTGTCT-ATGCG 376
||||||||||| | ||||| ||||||| |||||||| ||||||||||||||||| | | |
Sbjct 75 AGAGGTTAAAGGGCTCAAGCTAGGCAAAGGCGGAGTGGAATGTGCAATTTGTCTAAAG-G 133
Query 377 AGTTTGAAGA-CGAAGAGCCGCTACGTTGGATGCCTCCTTGTAGCCATACTTTCCATGCT 435
||||||| || | |||| |||||||||||||||||||||||||||||| ||| ||||||
Sbjct 134 AGTTTGAGGATC-AAGAAACGCTACGTTGGATGCCTCCTTGTAGCCATAATTTTCATGCT 192
Query 436 AATTGCATTGACGAATGGCTCTCTTCTCGGTCCACATGTCCCGTCTGCCGTGCAAATTTG 495
|||||||| |||| ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 193 AATTGCATCGACGTGTGGCTCTCTTCTCGGTCCACATGTCCCGTATGCCGTGCAAATCTG 252
Query 496 TCTCTGAAG-TCCGGTGACAGCTTTCCACATCCGAGTATGGATGTTGAAACGGGAAATGC 554
||||| || || || |||||||||||| ||||||| |||||| ||||||| ||||||||
Sbjct 253 TCTCTAAAACTC-GGCGACAGCTTTCCATATCCGAGCATGGATCTTGAAACAGGAAATGC 311
Query 555 ACAGA-GAGGTGTTCAAGAA-TCCCC 578
|| ||| ||| | |||| |||||
Sbjct 312 TT-GAAGAGATGTACTAGAACTCCCC 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39990939933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5