BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09180.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489790 jgi|Araly1|489790|fgenesh2_kg.6__2924__AT4G09180.1 1738 0.0
> Ahg489790 jgi|Araly1|489790|fgenesh2_kg.6__2924__AT4G09180.1
Length=1119
Score = 1738 bits (941), Expect = 0.0
Identities = 1065/1122 (95%), Gaps = 19/1122 (2%)
Strand=Plus/Plus
Query 15 aaaaaaataaaacagagcaagaaacaaaaaaaaaaatgtaaagaaagagaaaaaaaGCTT 74
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1 AAAAAAATAAAACAGAGCAAGAAAC-AAAAAAAAAATGTAAAGAAAGAGAAAAAAAACTT 59
Query 75 TCGTAG---TGTCTATTGAAACCAGAGAAAAGCCAAA--GGGGATGCAACCAACATCCGT 129
| |||| |||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 60 TTGTAGTCTTGTCTATTGAAACCAGAGAAAAGCCAAAGGGGGGATGCAATCAACATCCGT 119
Query 130 CGGTAGTAGCGGCGGTGGTGACGACggagga---gg--ca-gaggaggaggaggaggGCT 183
||||||||||||||||||||| ||||||||| || | |||||||||||||||||||
Sbjct 120 CGGTAGTAGCGGCGGTGGTGATGACGGAGGAGCTGGTAGAGGAGGAGGAGGAGGAGGGCT 179
Query 184 AAGTAGAAGTGGACTATCTCGGATCCGTTCAGCTCCAGCGACTTGGCTTGAAGCTTTACT 243
||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 180 GAGTCGAAGTGGACTATCTCGGATCCGTTCAGCTCCAGCAACTTGGCTTGAGGCTTTACT 239
Query 244 TGAGGAAGATGAAGAAGAGTCTTTGAAACCTAATCTTGGTCTCACCGATTTGCTTACCGG 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGAGGAAGATGAAGAAGAGTCTTTGAAACCTAATCTTGGTCTCACCGATTTGCTTACCGG 299
Query 304 GAACTCGAACGATTTACCGACAAGTCGCGGCTCGTTCGAGTTCCCGATTCCTGTTGAGCA 363
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 GAACTCGAACGATTTACCGACAAGTCGTGGCTCGTTCGAGTTCCCGATTCCTGTTGAGCA 359
Query 364 AGGGTTGTATCAACAAGGTGGGTTTCACCGACAGAATAGTACTCCGGCGGATTTTCTTAG 423
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGGTTTGTATCAACAAGGTGGGTTTCACCGACAGAATAGTACTCCGGCGGATTTTCTTAG 419
Query 424 TGGTTCTGATGGATTTATCCAAAGCTTTGGGATTCAGGCGAATTACGATTACTTATCGGG 483
|||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 420 TGGTTCTGATGGATTTATACAAAGCTTTGGGATTCCGGCGAATTGCGATTACTTATCGGG 479
Query 484 GAATATCGATGTTTCTCCGGGAAGTAAGCGGTCTAGAGAAATGGAAGCACTCTTCTCTTC 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GAATATCGATGTTTCTCCGGGAAGTAAGCGGTCTAGAGAAATGGAAGCACTCTTCTCTTC 539
Query 544 TCCTGAGTTTACTTCTCAAATGAAAGGAGAGCAAAGCAGCGGTCAAGTTCCTACCGGAGT 603
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 540 TCCTGAGTTTACTTCTCAAATGAAAGGAGAGCAAAGTAGCGGTCAAGTTCCTGCCGGGGT 599
Query 604 ATCAAGCATGTCGGATATGAACATGGAGAACCTTATGGAGGACTCTGTTGCTTTTAGGGT 663
|||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 ATCAGGCATGACGGATATGAACATGGAGAACCTTATGGAGGACTCTGTTGCCTTTAGGGT 659
Query 664 TCGGGCTAAACGTGGTTGCGCAACTCATCCCCGCAGCATTGCCGAGAGGGTACGAAGGAC 723
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCGGGCTAAACGTGGTTGTGCAACTCATCCCCGCAGCATTGCCGAGAGGGTACGAAGGAC 719
Query 724 GCGGATTAGTGATCGGATAAGGAAGCTACAAGAGCTTGTACCTAACATGGACAAGCAAAC 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GCGGATTAGTGATCGGATAAGGAAGCTACAAGAGCTTGTACCTAACATGGACAAGCAAAC 779
Query 784 CAACACTGCAGACATGTTAGAAGAAGCAGTAGAATACGTGAAAGTTCTTCAAAGGCAGAT 843
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 780 CAACACTGCAGACATGTTAGAGGAAGCTGTAGAATACGTGAAAGTTCTTCAAAGGCAGAT 839
Query 844 CCAGGAGTTAACAGAAGAACAGAAGAGGTGCACATGCATACCTAAGGAAGAACAATAAGG 903
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCAGGAGTTAACAGAAGAACAGAAGAGGTGCACATGCATACCTAAGGAAGAACAATAAGG 899
Query 904 TTTGCTCCTGATTTGTTTTATATTTGCTTAACGGCAATGATCTGATCGAAAAAT-TCGAA 962
|||||||||||||||||||||| |||| || |||||||||||||||||||| |||||
Sbjct 900 TTTGCTCCTGATTTGTTTTATACCTGCTAAATAGCAATGATCTGATCGAAAAAAATCGAA 959
Query 963 AGATGATCTTA--GCTTGAATTTAGATGGATGTCATGTTGAAAAGTATATTATTTGATAA 1020
|||||||||| ||||||||| |||||| ||| | ||||||||||||||||||||||||
Sbjct 960 AGATGATCTTTTTGCTTGAATT-AGATGGGTGTAAGGTTGAAAAGTATATTATTTGATAA 1018
Query 1021 A-TGGATGTAGGTGTAATATAAAATTTTTGTACAATAATGAAGAAAGTT-AAAAAGAATT 1078
| ||||||||||||||| |||||| |||||||||||||||||||||||| ||||| ||||
Sbjct 1019 AATGGATGTAGGTGTAAAATAAAAATTTTGTACAATAATGAAGAAAGTTCAAAAA-AATT 1077
Query 1079 AATGAAAACATATATTCTTTATGATATTAGTGAAATGACTTT 1120
|||||||||||||||||||||| | |||||||||||||||||
Sbjct 1078 AATGAAAACATATATTCTTTATAACATTAGTGAAATGACTTT 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5