BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09620.1
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489815 jgi|Araly1|489815|fgenesh2_kg.6__2949__AT4G09620.1 1136 0.0
> Ahg489815 jgi|Araly1|489815|fgenesh2_kg.6__2949__AT4G09620.1
Length=918
Score = 1136 bits (615), Expect = 0.0
Identities = 774/845 (92%), Gaps = 34/845 (4%)
Strand=Plus/Plus
Query 9 TTGCCTCTCTATCTCTCAACGAGACAATGGTTGGTTCCTAAATCTCTCACCTCA-ACAAA 67
|||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 1 TTGCCTCTCTATCTCTCAACGAAACAATGGTTGGTTCCTAAATCTCTCACCT-ACACAAA 59
Query 68 TCTTCTGATCAGGGTTTCTCAGAATCTTTCTACTTTGTTGACTCGGTTGCTTATCTGACT 127
||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 60 TCTTCTGATCACGGTTTCTCAG---------ACTTTGTTGACTCGGTTGCTTATCTGACT 110
Query 128 CAGTGATTTGAGTTCATCGGTGAACGAGTTAAGAGTATCCTCGCACACTCTAGGCATCTT 187
|| | | | ||||| || |||||||||||||||||||||||||||||| || |
Sbjct 111 CA--G---T--G---ATCGGCGACCGAGTTAAGAGTATCCTCGCACACTCTAGGTAT-AT 159
Query 188 TTCTCCACTTGCGTCAATGGAGATGGTGGGAAACTCGTTGGCTTCACCTTTGGCAACATT 247
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 160 TTCTCCACTTGCATCAATGGAGATGGTGGGAAACTCGTTAGCTTCACCTTTGGCAACATT 219
Query 248 GGGTTCAGCCAAATGCTTCCGCCACTCTGCAGTTGATCTTGTAACATACACTAATGTTTT 307
|||||| ||||||| ||| |||||| || ||| |||||||||||||||||||||||||||
Sbjct 220 GGGTTCTGCCAAATACTTTCGCCACCCTACAGGTGATCTTGTAACATACACTAATGTTTT 279
Query 308 ACCATT-A---AG-A-TTGAACTCGTCGTATCATGGTGTTAATGGAGGCGTAAGGACATC 361
|||||| | | | | |||||| |||||||||||||| | |||||| |||||||||||
Sbjct 280 ACCATTGAGCCTGAACTCGAACTCATCGTATCATGGTGTGATTGGAGGAGTAAGGACATC 339
Query 362 -TTCATATTCGCG-AAGCAAGTGGATAGTGTTTTGTTCAACAACACAAGTGGAAACCTCT 419
|| | |||||| ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 340 TTTTGT-TTCGCGAAAG-AAATGGATAGTGTTTTGTTCAACAACACAAGTGGAAACCTCT 397
Query 420 AATGAAGATCCAAATATATGGGAAGAATGCAAAGAAGCTTTGTCTTGTTTTGATTTCAGT 479
| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 398 AGTGAAGATCCAAAGATATGGGAAGAATGCAAAGAAGCTCTGTCTTGTTTTGATTTCAGT 457
Query 480 GTTGAGGAGAAAGACAAGATACTAGGGAAAGCGTTTGGTCATATCCACTCTCCGTACTGG 539
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 458 GTAGAGGAGAAAGACAAGATACTAGGAAAAGCGTTTGGTCATATCCACTCTCCGTACTGG 517
Query 540 ACCGAAGAACGAGTGAAAGAGAATCC-AAAGGTGGAAACTTTGAATCAAATACTAGAGTT 598
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 518 ACCGAAGAACGAGTGAAAGAGAATCCGAAA-GTGGAAACTTTGAATCAAATACTAGAGTT 576
Query 599 CCTTAGAAGTCTTGGTTTATCAGACGAAGATCTTCATAAGGTGATGAAGAAATTCCCGGA 658
|||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 577 CCTTAGAAGTCTCGGTTTATCGGACGAAGATCTGCATAAGGTGATGAAGAAATTCCCGGA 636
Query 659 AGTACTTGGTTGCAGTCTTGAAGAGGAGATGAAACCAAACATTGGGATTTTGGAAAACCA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 AGTACTTGGTTGCAGTCTTGAAGAGGAGATGAAACCAAACATTGGGATTTTGGAAAACCA 696
Query 719 ATGGGGGATTACGGGTAAGCAACTACGAAATCTGTTGCTTCGGAATCCGAAAGTGTTGGG 778
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 697 ATGGGGAATTACGGGTAAGCAACTACGAAATCTGTTGCTTCGGAACCCGAAAGTGTTGGG 756
Query 779 ATATAATGTGGATTGTAAAGGAGATTGTGTTGCTCAATGCACTCGGTGTTGGGTTCGGTT 838
||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 757 ATACAATGTGGATTGTAAAGGAGATTGTGTTGCGCAATGCACTCGTTGTTGGGTTCGGTT 816
Query 839 TTAGT 843
||||
Sbjct 817 CTAGT 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36102402399
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5