BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G09650.1 Length=966 Score E Sequences producing significant alignments: (Bits) Value Ahg489817 jgi|Araly1|489817|fgenesh2_kg.6__2951__AT4G09650.1 1170 0.0 > Ahg489817 jgi|Araly1|489817|fgenesh2_kg.6__2951__AT4G09650.1 Length=828 Score = 1170 bits (633), Expect = 0.0 Identities = 799/871 (92%), Gaps = 44/871 (5%) Strand=Plus/Plus Query 49 caacaacaatggcgtctcttcaacaaactctattctctcttcaatccaaactcCCACCAT 108 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1 CAACAACAATGGCGTCTCTTCAACAAACTCTATTCTCTCTTCAATCAAAACTCCCACCAT 60 Query 109 CCTCCTTCCAAATCGCCAGATCTCTCCCACTCCGAAAAACCTTCCCAATCCGAATCAACA 168 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 61 CCTCCTTCCAAATCGCCAGATCTCTCCCTCTCCGAAAAACCTTCCCAATCCGAATCAACA 120 Query 169 ACGGTGGAAACGCCGCCGGAGCAAGAATGTCAGCCACCGCAGCATCAAGCTACGCGATGG 228 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AC---GGAAACGCCGCCGGAGCAAGAATGTCAGCCACCGCAGCATCAAGCTACGCGATGG 177 Query 229 CATTAGCAGACGTCGCGAAAAGAAACGACACAATGGAATTAACAGTCACAGACATCGAGA 288 | |||||||||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct 178 CTTTAGCAGACGTCGCTAAAAGAAACGACACAATGGAATTAACAGTCGCCGACATCGAAA 237 Query 289 AGCTCGAACAAGTCTTCTCAGATCCACAAGTACTAAACTTCTTCGCGAATCCAACAATCA 348 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 AACTCGATCAAGTCTTCTCAGATCCACAAGTACTAAACTTCTTCGCGAATCCAACAATCA 297 Query 349 CCGTCGAGAAGAAACGTCAAGTCATCGACGACATAGTGAAATCGTCGTCTCTTCAATCTC 408 |||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||| Sbjct 298 CCGTCGAGAAGAAACGTCAAGTCATCGACGACATCGTGAAATCATCATCTCTTCAATCTC 357 Query 409 ACACATCTAACTTCCTCAACGTCCTCGTCGACGCGAATCGGATCAATATCGTGACGGAGA 468 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 ATACCTCTAACTTCCTCAACGTCCTCGTCGACGCGAATCGGATCAATATCGTGACGGAGA 417 Query 469 TCGTTAAGGAGTTTGAGTTGGTTTACAATAAGCTAACGGATACACAATTGGCGGAGGTTA 528 | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 TTGTTAAAGAGTTTGAATTGGTTTACAATAAGCTAACGGATACACAATTGGCGGAGGTTA 477 Query 529 GGTCGGTGGTGAAATTGGAAGCGCCGCAATTAGCTCAGATTGCGAAACAGGTTCAGAAGT 588 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 478 GGTCGGTGGTGAAATTGGAACCGCCGCAATTAGCTCAGATTGCGAAACAGGTTCAGAAGT 537 Query 589 TAACCGGAGCTAAGAATGTTCGGGTTAAGACGGTTATTGATGCGAGTCTTGTGGCTGGTT 648 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 538 TAACCGGAGCTAAGAATGTTCGGGTTAAGACGGTTATTGATCCGAGTCTTGTGGCTGGTT 597 Query 649 TTACGATTCGGTATGGTGAATCCGGTTCGAAGCTTATTGATATGAGTGTGAAGAAACAGC 708 ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| Sbjct 598 TTACGATTCGGTATGGTGATTCCGGTTCGAAGCTTATTGATATGAGTGTTAAGAAGCAGC 657 Query 709 TTGAAGATATTGCTTCT-CAGCTTGAACTTGGTGAGATTCAATTAGCTACTTGAGATTTG 767 |||||||||||||| | || ||||||||||||||||||||||||||||||||| | | Sbjct 658 TTGAAGATATTGCT-CAACAACTTGAACTTGGTGAGATTCAATTAGCTACTTGA-A---G 712 Query 768 GGAAAAATTGTATAAGAGAAAAATTTGAGAATCttttttttttgtgcaagtttaattttt 827 |||| || | ||||| | | | | |||||||||| | ||| | || Sbjct 713 AGAAA--TT-T----GAGAA---T--G-G--T-TTTTTTTTTT-T-----TTT--TCTTC 748 Query 828 tttCTCCTCATCTTCTTTCTCTATTAATCAATCATATAATATACAGTACTGATGATATAA 887 || || || | | |||||||||||||||||||||||||||||| | |||||||||| Sbjct 749 TT-CT--TC-T-T-CTTTCTCTATTAATCAATCATATAATATAC--T---GATGATATAA 797 Query 888 TAATGATTCTGAGTTTATTATCTTTGTAATT 918 |||| |||||||||||||||||||||||||| Sbjct 798 TAATAATTCTGAGTTTATTATCTTTGTAATT 828 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35873664897 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5