BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09750.1
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942756 jgi|Araly1|942756|scaffold_603300.1 1611 0.0
> Ahg942756 jgi|Araly1|942756|scaffold_603300.1
Length=1013
Score = 1611 bits (872), Expect = 0.0
Identities = 968/1015 (95%), Gaps = 4/1015 (0%)
Strand=Plus/Plus
Query 60 TATCTTCCACAACTCACGAAAATGTTTCTCTTAAAGACATGGAGATCAACCGCTTTTGGG 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATCTTCCACAACTCACGAAAATGTTTCTCTTAAAGACATGGAGATCAACCGCTTTTGGG 60
Query 120 GTTTATGGCTACATGAATTTCACCAAGAGTGGTTTCTTAGATCATTCAAAGAAGTTTAAA 179
||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 61 GTTTATGGCTATATGAATTTCACCAAGAATGGTTTCTTAGACCATTCAAAGAAGTTTAAA 120
Query 180 CCTGAAGATATGCAGTTACAAATTGAAGGAAAGAATTGTGTAGTTACTGGAGCTAATTCA 239
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 121 CCTGAAGATATGCAGTTACAAATAGAAGGAAAGAATTGTGTGGTTACTGGAGCTAATTCT 180
Query 240 GGTATTGGTTTTGCTGCTGCAGAGGGTCTTGCTTCACGTGGAGCAACTGTTTACATGGTG 299
|||||||||| |||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 181 GGTATTGGTTATGCTGCTGCAGAGGGTCTAGCTTCACGTGGGGCGACTGTTTACATGGTG 240
Query 300 TGCCGGAACAAGGAAAGAGGACAAGAGGCTCTTTCTAAGATTCAAACCTCAACAGGAAAC 359
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 241 TGCCGGAACAAGGAAAGAGGACAAGTGGCTCTTTCTAAGATTCAAACATCAACAGGAAAC 300
Query 360 CAAAATGTGTACTTGGAAGTATGTGATTTGTCTTCCGTTAATGAAATCAAA-TCATTTGC 418
|||||||||||| | ||||| |||||||||||||||||||||||||| ||| || |||||
Sbjct 301 CAAAATGTGTACCTAGAAGTTTGTGATTTGTCTTCCGTTAATGAAAT-AAAGTCCTTTGC 359
Query 419 TTCGAGTTTCGCTTCCAAGGATGTTCCGGTTCATGTGCTGGTTAATAATGCTGGTTTGCT 478
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTCAAGTTTCGCTTCCAAGGATGTTCCGGTTCATGTGCTGGTTAATAATGCTGGTTTGCT 419
Query 479 TGAGAACAAACGTACTACTACACCTGAAGGATTCGAGTTAAGTTTTGCGGTGAATGTACT 538
||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 420 TGAGAACAAACGTACTATTACACCTGAAGGATTCGAGTTAAATTTCGCGGTGAATGTACT 479
Query 539 TGGGACATACACAATGACAGAGTTGATGCTTCCATTGTTGGAGAAAGCAACACCAGACGC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGGGACATACACAATGACAGAGTTGATGCTTCCATTGTTGGAGAAAGCAACACCAGACGC 539
Query 599 CAAAGTCATTACAGTTGCCTCTGGTGGAATGTACACTTCGCCGCTTACTACAGATCTTCA 658
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 540 CAAAGTCATTACAGTTGCCTCTGGTGGAATGTACACATCGCCGCTTACAACAGATCTTCA 599
Query 659 GTTTAGTGGTGAAAAATTTGATGGAGTGGAACAATACGCACGGAACAAAAGAATCCAGGT 718
||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 GTTTAGTGGTGAAAAGTTCGATGGAGTGGAACAATACGCACGGAACAAAAGAATTCAGGT 659
Query 719 GGCTCTGACAGAAAAATGGGCTGATAAGTACAAA-AATAAAGGCATAGGGTTCTACTCAA 777
||||| |||||||| |||||||||||||||||| || ||||||||||||||||||||||
Sbjct 660 TGCTCTAACAGAAAAGTGGGCTGATAAGTACAAAGAA-AAAGGCATAGGGTTCTACTCAA 718
Query 778 TGCACCCTGGCTGGGCTGAGACACCAGGTGTTGCCAAGAGTTTACCGAGTTTCAGTGAAT 837
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 TGCATCCTGGCTGGGCTGAGACACCTGGTGTTGCCAAGAGTTTACCGAGTTTCAGTGAAT 778
Query 838 CGTTCGCGGGTAAGCTTAGAACAAGCGAACAAGGAGCCGATACAATCGTTTGGTTAGCAC 897
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 779 CGTTTGCGGGTAAGCTTAGAACAAGCGAACAAGGAGCAGATACAATCGTTTGGTTAGCAC 838
Query 898 TGCAGCCAAAAGAGAAGCTTGTCTCTGGTGCATTCTATTTCGATAGAGCTGAAGCACCAA 957
||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 839 TGCAGCCTAAAGAGAAGCTGGTCTCTGGTTCATTCTATTTCGATAGAGCTGAAGCACCAA 898
Query 958 AACATCTAAAGCTTGCAGGTACAAGCAAGTCTCATGACCTTATTGACTCAGTCATTGATT 1017
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 899 AACATCTAAAGCTTGCAGGTACAAGCAAGTCCCATGACCTTATAGACTCAGTCATTGATA 958
Query 1018 CTGTGCATTCCATGGCAGCTCTTAATCCTTAAATGTCCATCTTCGACATAGtttt 1072
||||||||||||||||||||||| |||||||| |||||||||||| | || ||||
Sbjct 959 CTGTGCATTCCATGGCAGCTCTTGATCCTTAAGTGTCCATCTTCGTCGTAATTTT 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43460125380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5