BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09760.2
Length=1333
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942757 jgi|Araly1|942757|scaffold_603301.1 1644 0.0
> Ahg942757 jgi|Araly1|942757|scaffold_603301.1
Length=1073
Score = 1644 bits (890), Expect = 0.0
Identities = 1024/1087 (94%), Gaps = 16/1087 (1%)
Strand=Plus/Plus
Query 72 TTTGATTGtttttttttCTTATAGATGGCGGTAGGAATCTTTGGATTGATCCCAAGCTCA 131
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1 TTTGATTGTTTTTTCTTCTTATAGATGGCAATAGGAATCTTTGGATTGATCCCAAGTTCA 60
Query 132 TCACCAGACGAGCTAAGGAAGATTCTTCAAGCGCTTTCGACGAAATGGGGAGACGTAGTT 191
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TCACCAGACGAGCTAAGGAAGATTCTTCAAGCACTTTCGACGAAATGGGGAGACGTAGTT 120
Query 192 GAGGATTTTGAGAGTCTTGAAGTGAAGCCAATGAAAGGAGCGATGACTAACGAAGTGTTC 251
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 GAGGATTTTGAGAGTCTTGAAGTGAAACCAATGAAAGGAGCGATGACTAACGAAGTGTTC 180
Query 252 ATGGTTAGTTGGCCTAGAAAAGAAACGAATCTTCGATGTAGGAAGCTTCTTGTTCGTGTT 311
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 ATGGTTAGTTGGCCAAGAAAAGAAACGAATCTTCGATGTAGGAAACTTCTTGTTCGTGTT 240
Query 312 TATGGTGAAGGTGTTGAGCTTTTCTTCAATAGAGACGATGAGATTCGTACTTTTGAGTAT 371
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 TATGGAGAAGGCGTTGAGCTTTTCTTCAACAGAGACGATGAGATTCGTACTTTTGAGTAT 300
Query 372 GTTGCTCGTCATGGTCACGGTCCTACACTTCTTGGTCGCTTCGCCGGCGGTAGAGTCGAA 431
|| ||||||||||| || || ||||| || ||||| ||||||||||||||||||||||||
Sbjct 301 GTAGCTCGTCATGGCCATGGACCTACTCTCCTTGGACGCTTCGCCGGCGGTAGAGTCGAA 360
Query 432 GAGTTTATCCATGCCCGGACACTATCGGCAACCGATCTTCGTGATCCGAACATATCAGCT 491
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 GAGTTTATCCATGCTAGGACACTATCGGCAACCGATCTTCGTGATCCGAACGTATCAGCT 420
Query 492 CTTGTTGCATCTAAGCTAAGAAGATTTCACAGCATACACATTCCTGGAGATAGAATTATG 551
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 421 CTGGTTGCATCTAAGCTAAGAAGATTTCACAGCATACACATTCCTGGAGATAGAAATCTG 480
Query 552 CTCATCTGGGACAGGATGAGGACTTGGGTAGGACAAGCCAAGAATCTATGTTCAAATGAA 611
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 481 CTCATATGGGACAGGATGAGGACTTGGGTAGGACAAGCCAAGAATCTGTGTTCAAGTGAA 540
Query 612 CATTCAACAGAGTTTGGTCTAGACGACATTGAAGATGAAATCAACCTGCTGGAACAAGAA 671
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 541 CACTCAACAGAGTTTGGTCTAGACGACATTGAAGATGAAATCAACATGCTGGAACAAGAA 600
Query 672 GTGAACAATGAACAAGAGATTGGCTTCTGTCACAATGACTTGCAGTATGGTAACATCATG 731
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 GTGAACAATGAACAAGAGATTGGCTTCTGTCACAATGATTTGCAGTATGGTAACATCATG 660
Query 732 ATTGATGAAGAAACCAATGCAATTACTATCATTGATTATGAGTATGCAAGTTATAATCCG 791
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATTGATGAAGACACCAATGCCATTACTATCATTGATTATGAGTATGCAAGTTATAATCCA 720
Query 792 ATCGCTTACGACATAGCAAATCATTTCTGTGAAATGGCGGCAGATTATCATTCAAACACT 851
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 721 ATCGCTTACGACATAGCAAATCATTTCTGTGAAATGGCGGCAGATTATCATTCTGACACT 780
Query 852 CCTCATATCTTGGACTACACTCTATATCCAGGGGAAGAAGAAAGGAGGAGATTCATATGT 911
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 781 CCTCATATCTTGGACTACACTCTATATCCAGGAGAAGAAGAAAGGAGGAGATTCATCTAT 840
Query 912 AACTACTTAACCTCTTCAGGTGAAGAAGCAAGAGAAGAAGACATAGAACAACTT-TTGGA 970
|||||| | ||||||||||||||||||| | ||||||||| || |||||
Sbjct 841 AACTACCTCACCTCTTCAGGTGAAGAAG-A-----------CATAGAACAG-TTCTTGGA 887
Query 971 TGATATTGAGAAGTATACATTGGCAAGCCATCTCTTCTGGGGTTTATGGGGAATCATATC 1030
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 888 TGATATTGACAAGTATACATTGGCAAGCCATCTCTTCTGGGGTTTATGGGGAATCATCTC 947
Query 1031 TGGTTATGTGAACAAGATTGAGTTTGATTATATCGAGTATTCGAGGCAGAGATTCAAACA 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 TGGTTATGTGAACAAGATTGAGTTTGATTATATCGAGTATTCGAGGCAGAGATTCAAACA 1007
Query 1091 GTATTGGCTTCGCAAGCCA-AAGCTTTTATCTTTCTTCCCATCCTAATAAGTAAATTCTC 1149
||||||| |||| |||||| ||| |||||||||||| |||||||||||||||||||||||
Sbjct 1008 GTATTGGATTCGAAAGCCACAAG-TTTTATCTTTCTACCCATCCTAATAAGTAAATTCTC 1066
Query 1150 TGTTTAC 1156
| |||||
Sbjct 1067 TATTTAC 1073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49864775436
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5